Abcc1-ps1 (ATP binding cassette subfamily C member 1, pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Abcc1-ps1 (ATP binding cassette subfamily C member 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Abcc1-ps1
Name: ATP binding cassette subfamily C member 1, pseudogene 1
RGD ID: 1585299
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC100362702; LOC102550577; LOC688708; multidrug resistance-associated protein 1-like; similar to ATP-binding cassette, sub-family C (CFTR/MRP), member 1
Related Functional Gene: Abcc1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8102,148,842 - 2,256,821 (+)NCBIGRCr8
mRatBN7.2101,641,710 - 1,750,234 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0101,740,383 - 1,809,530 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1021 - 5,228 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.010629,728 - 719,937 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4101,438,432 - 1,445,907 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Abcc1-ps1
306 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000081812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1021 - 5,228 (-)Ensembl
RefSeq Acc Id: XR_005490606
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8102,148,842 - 2,256,821 (+)NCBI
mRatBN7.2101,641,710 - 1,750,234 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-26219 BioCyc
Ensembl Genes ENSRNOG00000061539 Ensembl
NCBI Gene 688708 ENTREZGENE
PhenoGen Abcc1-ps1 PhenoGen
RatGTEx ENSRNOG00000061539 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Abcc1-ps1  ATP binding cassette subfamily C member 1, pseudogene 1  LOC688708  similar to ATP-binding cassette, sub-family C (CFTR/MRP), member 1  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC688708  similar to ATP-binding cassette, sub-family C (CFTR/MRP), member 1  LOC102550577  multidrug resistance-associated protein 1-like  Data merged from RGD:7531642 737654 PROVISIONAL
2015-07-29 LOC688708  similar to ATP-binding cassette, sub-family C (CFTR/MRP), member 1  LOC100362702  multidrug resistance-associated protein 1-like  Data merged from RGD:2324156 737654 PROVISIONAL
2013-12-17 LOC102550577  multidrug resistance-associated protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100362702  multidrug resistance-associated protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688708  similar to ATP-binding cassette, sub-family C (CFTR/MRP), member 1      Symbol and Name status set to provisional 70820 PROVISIONAL