Slc25a40 (solute carrier family 25, member 40) - Rat Genome Database

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Gene: Slc25a40 (solute carrier family 25, member 40) Rattus norvegicus
Analyze
Symbol: Slc25a40
Name: solute carrier family 25, member 40
RGD ID: 1308774
Description: Predicted to be involved in erythrocyte development. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Orthologous to human SLC25A40 (solute carrier family 25 member 40); INTERACTS WITH (+)-schisandrin B; aflatoxin B1; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC296813; MGC112631; probable mitochondrial glutathione transporter SLC25A40; RGD1308774; similar to mitochondrial carrier family protein; solute carrier family 25 member 40
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8426,544,288 - 26,631,439 (-)NCBIGRCr8
mRatBN7.2425,631,447 - 25,676,454 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl425,589,360 - 25,676,472 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx430,621,186 - 30,666,165 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0426,547,418 - 26,592,397 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0424,921,313 - 24,966,307 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0422,619,700 - 22,661,685 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl422,576,576 - 22,661,722 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0422,551,248 - 22,593,670 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4421,497,685 - 21,524,080 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1421,472,004 - 21,511,352 (+)NCBI
Celera421,105,789 - 21,162,433 (-)NCBICelera
Cytogenetic Map4q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18614015  


Genomics

Comparative Map Data
Slc25a40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8426,544,288 - 26,631,439 (-)NCBIGRCr8
mRatBN7.2425,631,447 - 25,676,454 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl425,589,360 - 25,676,472 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx430,621,186 - 30,666,165 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0426,547,418 - 26,592,397 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0424,921,313 - 24,966,307 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0422,619,700 - 22,661,685 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl422,576,576 - 22,661,722 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0422,551,248 - 22,593,670 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4421,497,685 - 21,524,080 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1421,472,004 - 21,511,352 (+)NCBI
Celera421,105,789 - 21,162,433 (-)NCBICelera
Cytogenetic Map4q12NCBI
SLC25A40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38787,833,568 - 87,876,360 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl787,833,568 - 87,876,360 (-)EnsemblGRCh38hg38GRCh38
GRCh37787,462,883 - 87,505,675 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36787,303,353 - 87,343,604 (-)NCBINCBI36Build 36hg18NCBI36
Celera782,168,374 - 82,210,252 (-)NCBICelera
Cytogenetic Map7q21.12NCBI
HuRef782,073,743 - 82,115,567 (-)NCBIHuRef
CHM1_1787,393,992 - 87,435,858 (-)NCBICHM1_1
T2T-CHM13v2.0789,083,493 - 89,126,273 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2786,795,132 - 86,837,010 (-)NCBI
Slc25a40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3958,472,730 - 8,504,840 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl58,472,850 - 8,504,797 (+)EnsemblGRCm39 Ensembl
GRCm3858,422,730 - 8,454,839 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl58,422,850 - 8,454,797 (+)EnsemblGRCm38mm10GRCm38
MGSCv3758,422,850 - 8,454,793 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3658,428,844 - 8,465,984 (+)NCBIMGSCv36mm8
Celera58,343,144 - 8,375,151 (+)NCBICelera
Cytogenetic Map5A1NCBI
cM Map53.43NCBI
Slc25a40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554325,190,676 - 5,244,587 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554325,191,197 - 5,244,587 (-)NCBIChiLan1.0ChiLan1.0
SLC25A40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26105,715,223 - 105,758,033 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17153,979,861 - 154,022,671 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0779,830,280 - 79,873,088 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1793,478,728 - 93,521,459 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl793,478,733 - 93,521,459 (-)Ensemblpanpan1.1panPan2
SLC25A40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11413,933,137 - 13,983,722 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1413,933,369 - 13,983,676 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1413,504,520 - 13,555,112 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01413,697,708 - 13,748,528 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1413,697,740 - 13,748,520 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11413,901,368 - 13,952,175 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01413,626,981 - 13,677,944 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01413,911,046 - 13,963,517 (-)NCBIUU_Cfam_GSD_1.0
Slc25a40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511826,965,878 - 27,013,836 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936763986,843 - 1,036,859 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936763987,464 - 1,036,091 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl992,481,564 - 92,528,186 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1992,481,524 - 92,526,729 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29101,932,475 - 101,963,059 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12161,062,656 - 61,117,659 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2161,063,472 - 61,115,217 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604242,957,628 - 43,012,833 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248095,494,304 - 5,555,309 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248095,494,470 - 5,554,948 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc25a40
184 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:216
Count of miRNA genes:147
Interacting mature miRNAs:163
Transcripts:ENSRNOT00000030352, ENSRNOT00000061342
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat

Markers in Region
RH139066  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2425,631,612 - 25,631,808 (+)MAPPERmRatBN7.2
Rnor_6.0422,617,843 - 22,618,038NCBIRnor6.0
Rnor_5.0422,549,391 - 22,549,586UniSTSRnor5.0
RGSC_v3.4421,512,279 - 21,512,474UniSTSRGSC3.4
Celera421,117,395 - 21,117,590UniSTS
RH 3.4 Map4151.9UniSTS
Cytogenetic Map4q12UniSTS
BF393841  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2425,672,222 - 25,672,364 (+)MAPPERmRatBN7.2
Rnor_6.0422,657,499 - 22,657,640NCBIRnor6.0
Rnor_5.0422,589,484 - 22,589,625UniSTSRnor5.0
RGSC_v3.4422,551,473 - 22,551,614UniSTSRGSC3.4
Celera421,158,234 - 21,158,375UniSTS
RH 3.4 Map4169.0UniSTS
Cytogenetic Map4q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 8 6 10 18 13 29 8
Low 35 51 41 9 41 8 11 56 22 12 3 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000030352   ⟹   ENSRNOP00000029371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl425,606,242 - 25,676,472 (-)Ensembl
Rnor_6.0 Ensembl422,619,065 - 22,661,722 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000061342   ⟹   ENSRNOP00000058058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl425,589,360 - 25,676,422 (-)Ensembl
Rnor_6.0 Ensembl422,576,576 - 22,661,685 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098158   ⟹   ENSRNOP00000077662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl425,631,447 - 25,676,472 (-)Ensembl
RefSeq Acc Id: NM_001393710   ⟹   NP_001380639
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8426,586,377 - 26,631,383 (-)NCBI
mRatBN7.2425,631,447 - 25,676,454 (-)NCBI
RefSeq Acc Id: XM_063285716   ⟹   XP_063141786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8426,544,288 - 26,631,439 (-)NCBI
RefSeq Acc Id: XM_063285717   ⟹   XP_063141787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8426,544,288 - 26,631,432 (-)NCBI
RefSeq Acc Id: XM_063285718   ⟹   XP_063141788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8426,586,375 - 26,631,430 (-)NCBI
RefSeq Acc Id: XM_063285719   ⟹   XP_063141789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8426,561,165 - 26,631,433 (-)NCBI
RefSeq Acc Id: XM_063285720   ⟹   XP_063141790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8426,544,288 - 26,601,257 (-)NCBI
RefSeq Acc Id: XM_063285721   ⟹   XP_063141791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8426,544,288 - 26,623,751 (-)NCBI
RefSeq Acc Id: XR_010065616
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8426,588,054 - 26,631,433 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000058058   ⟸   ENSRNOT00000061342
RefSeq Acc Id: ENSRNOP00000029371   ⟸   ENSRNOT00000030352
RefSeq Acc Id: ENSRNOP00000077662   ⟸   ENSRNOT00000098158
RefSeq Acc Id: NP_001380639   ⟸   NM_001393710
- UniProtKB: Q498U3 (UniProtKB/Swiss-Prot),   A0A8L2QG81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141786   ⟸   XM_063285716
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063141787   ⟸   XM_063285717
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063141791   ⟸   XM_063285721
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063141790   ⟸   XM_063285720
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063141789   ⟸   XM_063285719
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063141788   ⟸   XM_063285718
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q498U3-F1-model_v2 AlphaFold Q498U3 1-337 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692831
Promoter ID:EPDNEW_R3355
Type:initiation region
Name:Slc25a40_1
Description:solute carrier family 25, member 40
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0422,661,719 - 22,661,779EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308774 AgrOrtholog
BioCyc Gene G2FUF-45823 BioCyc
Ensembl Genes ENSRNOG00000022837 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055019644 UniProtKB/Swiss-Prot
  ENSRNOG00060012488 UniProtKB/Swiss-Prot
  ENSRNOG00065017896 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000030352.7 UniProtKB/TrEMBL
  ENSRNOT00000061342.6 UniProtKB/Swiss-Prot
  ENSRNOT00000098158 ENTREZGENE
  ENSRNOT00000098158.1 UniProtKB/TrEMBL
  ENSRNOT00055033528 UniProtKB/Swiss-Prot
  ENSRNOT00060021168 UniProtKB/Swiss-Prot
  ENSRNOT00065029969 UniProtKB/Swiss-Prot
Gene3D-CATH 1.50.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7322585 IMAGE-MGC_LOAD
InterPro Mit_carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mtm1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:296813 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112631 IMAGE-MGC_LOAD
NCBI Gene 296813 ENTREZGENE
PANTHER PTHR45760 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc25a40 PhenoGen
PRINTS MITOCARRIER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022837 RatGTEx
  ENSRNOG00055019644 RatGTEx
  ENSRNOG00060012488 RatGTEx
  ENSRNOG00065017896 RatGTEx
Superfamily-SCOP SSF103506 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZJJ7_RAT UniProtKB/TrEMBL
  A0A8L2QG81 ENTREZGENE, UniProtKB/TrEMBL
  Q498U3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-26 Slc25a40  solute carrier family 25, member 40  RGD1308774  similar to mitochondrial carrier family protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1308774  similar to mitochondrial carrier family protein  RGD1308774_predicted  similar to mitochondrial carrier family protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308774_predicted  similar to mitochondrial carrier family protein (predicted)  LOC296813_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC296813_predicted  similar to mitochondrial carrier family protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL