Ube3d (ubiquitin protein ligase E3D)

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Gene: Ube3d (ubiquitin protein ligase E3D) Rattus norvegicus

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Symbol:

Ube3d

Name:

ubiquitin protein ligase E3D

RGD ID:

1306773

Description:

Predicted to enable cyclin binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be located in membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human UBE3D (ubiquitin protein ligase E3D); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

E3 ubiquitin-protein ligase E3D; HECT-type E3 ubiquitin transferase E3D; hypothetical LOC315863; LOC315863; MGC124836; RGD1306773; UbcH10 binding protein with a hect-like domain; ubcH10-binding protein with a HECT-like domain; Ube2cbp; ubiquitin-conjugating enzyme E2C binding protein; ubiquitin-conjugating enzyme E2C-binding protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UBE3D (ubiquitin protein ligase E3D)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ube3d (ubiquitin protein ligase E3D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ube3d (ubiquitin protein ligase E3D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UBE3D (ubiquitin protein ligase E3D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UBE3D (ubiquitin protein ligase E3D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ube3d (ubiquitin protein ligase E3D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UBE3D (ubiquitin protein ligase E3D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UBE3D (ubiquitin protein ligase E3D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ube3d (ubiquitin protein ligase E3D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	URI1 (URI1 prefoldin like chaperone)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	UBE3D (ubiquitin protein ligase E3D)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ube3d (ubiquitin protein ligase E3D)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ube3d (ubiquitin protein ligase E3D)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	IPA1	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	Y71H2AM.3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG7326	Alliance	DIOPT (Hieranoid\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	ube3d	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	96,125,609 - 96,293,122 (-)	NCBI		GRCr8
mRatBN7.2	8	87,245,503 - 87,413,104 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	87,245,589 - 87,413,057 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	92,927,512 - 93,094,414 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	91,126,712 - 91,293,614 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	88,960,141 - 89,134,732 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	93,948,689 - 94,120,477 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	93,948,767 - 94,120,458 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	93,463,000 - 93,633,611 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	91,537,389 - 91,704,052 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	91,675,636 - 91,726,778 (-)	NCBI
Celera	8	86,850,461 - 87,016,589 (-)	NCBI		Celera
Cytogenetic Map	8	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

immunodeficiency 23 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

chromium(6+) (ISO)

Cuprizon (EXP)

dexamethasone (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

fenvalerate (EXP)

fipronil (EXP)

formaldehyde (ISO)

furan (EXP)

indometacin (ISO)

lead diacetate (ISO)

mercury dibromide (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

methylphenidate (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

quercetin (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

thioacetamide (EXP)

trichostatin A (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

proteasome-mediated ubiquitin-dependent protein catabolic process (IBA)

protein autoubiquitination (IBA,IEA,ISO)

protein monoubiquitination (IBA,IEA,ISO)

protein polyubiquitination (IBA,IEA,ISO)

Cellular Component

cytosol (IBA,ISO)

membrane (IEA)

nucleus (IBA)

ubiquitin ligase complex (IBA,IEA,ISO)

Molecular Function

cyclin binding (IBA,IEA,ISO)

protein binding (ISO)

ubiquitin conjugating enzyme binding (IBA)

ubiquitin protein ligase activity (IBA,IEA,ISO)

ubiquitin-like protein conjugating enzyme binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15749827

Genomics

Comparative Map Data

Ube3d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	96,125,609 - 96,293,122 (-)	NCBI		GRCr8
mRatBN7.2	8	87,245,503 - 87,413,104 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	87,245,589 - 87,413,057 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	92,927,512 - 93,094,414 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	91,126,712 - 91,293,614 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	88,960,141 - 89,134,732 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	93,948,689 - 94,120,477 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	93,948,767 - 94,120,458 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	93,463,000 - 93,633,611 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	91,537,389 - 91,704,052 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	91,675,636 - 91,726,778 (-)	NCBI
Celera	8	86,850,461 - 87,016,589 (-)	NCBI		Celera
Cytogenetic Map	8	q31	NCBI

UBE3D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	82,880,802 - 83,065,841 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	82,892,390 - 83,065,841 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	83,602,109 - 83,775,560 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	83,658,905 - 83,832,264 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	84,035,429 - 84,208,843 (-)	NCBI		Celera
Cytogenetic Map	6	q14.1	NCBI
HuRef	6	80,830,086 - 81,003,588 (-)	NCBI		HuRef
CHM1_1	6	83,699,816 - 83,873,224 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	84,098,732 - 84,288,846 (-)	NCBI		T2T-CHM13v2.0

Ube3d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	86,189,364 - 86,347,003 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	86,189,359 - 86,347,003 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	86,307,234 - 86,464,976 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	86,307,306 - 86,464,950 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	86,200,841 - 86,358,523 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	86,103,952 - 86,261,668 (-)	NCBI		MGSCv36	mm8
Celera	9	83,374,429 - 83,536,852 (-)	NCBI		Celera
Cytogenetic Map	9	E3.1	NCBI
cM Map	9	46.58	NCBI

Ube3d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	10,642,047 - 10,797,612 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	10,642,102 - 10,797,612 (-)	NCBI	ChiLan1.0	ChiLan1.0

UBE3D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	102,692,439 - 103,166,887 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	100,886,340 - 101,061,115 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	80,729,751 - 80,962,322 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	84,062,079 - 84,236,826 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	84,062,079 - 84,236,860 (-)	Ensembl	panpan1.1		panPan2

UBE3D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	43,264,956 - 43,475,583 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	43,282,372 - 43,476,086 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	43,078,353 - 43,288,980 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	44,032,015 - 44,241,623 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	43,994,228 - 44,241,887 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	43,372,224 - 43,581,804 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	43,320,940 - 43,530,526 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	43,481,894 - 43,691,291 (-)	NCBI		UU_Cfam_GSD_1.0

Ube3d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	78,607,940 - 78,752,364 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936510	7,718,535 - 7,862,998 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936510	7,718,552 - 7,862,946 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBE3D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	83,140,635 - 83,295,785 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	83,140,479 - 83,295,865 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	93,417,743 - 93,474,534 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBE3D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	7,558,463 - 7,737,630 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	7,558,321 - 7,737,485 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	183,768,030 - 183,941,569 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ube3d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624799	11,523,473 - 11,703,079 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624799	11,523,477 - 11,702,781 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ube3d
1100 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	182
Count of miRNA genes:	131
Interacting mature miRNAs:	146
Transcripts:	ENSRNOT00000014600
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	54259986	100382532	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	73473045	118473045	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	71888757	116888757	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	54043744	98968765	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	46531722	99083736	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	71888757	116888757	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
2303570	Gluco48	Glucose level QTL 48	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	49805831	94805831	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	76468691	121468691	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	54237644	99103503	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	71888757	116888757	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	71888757	116888757	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	82460758	122812818	Rat

Markers in Region

RH94569

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	87,337,051 - 87,337,208 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	146,686,949 - 146,687,106 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	94,041,606 - 94,041,762	NCBI	Rnor6.0
Rnor_6.0	5	152,686,605 - 152,686,761	NCBI	Rnor6.0
Rnor_5.0	8	93,555,446 - 93,555,602	UniSTS	Rnor5.0
Rnor_5.0	5	156,472,203 - 156,472,359	UniSTS	Rnor5.0
Cytogenetic Map	8	q31	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001839187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC101916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014600 ⟹ ENSRNOP00000014600

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	87,245,589 - 87,413,057 (-)	Ensembl
Rnor_6.0 Ensembl	8	93,948,767 - 94,120,458 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080195 ⟹ ENSRNOP00000071165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	87,293,545 - 87,412,990 (-)	Ensembl
Rnor_6.0 Ensembl	8	93,949,125 - 94,120,433 (-)	Ensembl

RefSeq Acc Id:

NM_001039610 ⟹ NP_001034699

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	96,125,609 - 96,293,078 (-)	NCBI
mRatBN7.2	8	87,245,582 - 87,413,057 (-)	NCBI
Rnor_6.0	8	93,948,760 - 94,120,458 (-)	NCBI
Rnor_5.0	8	93,463,000 - 93,633,611 (-)	NCBI
RGSC_v3.4	8	91,537,389 - 91,704,052 (-)	RGD
Celera	8	86,850,461 - 87,016,589 (-)	RGD

Sequence:

show sequence

CGCCTGGCCGCCGCGCTGCCTCCGCCAGGAAGCCAGCGGCTTGCCACGGCCGCACGTGCTCCCA
CCCAGTCCCAGTTCTGGTAACTGCGGGCTCGGTCCCGCGTGGGCCCCTGAGTCGGCCATGGCGG
TGGTTGAGGCGGAAACACGCGTGTTCCTGGAAGTGCGGAGACGGCTCCAGAGCGCGCTGCTAAT
CCTGGGGGAGCCAGATGAAGGAGGGATGAACCTGGACATATCCGTAACGCCTACCTCTCTTTTG
ATGAGAAGCCCTGACGGCTGCACCGAGATCCGGCTTCCAGCAGGGGTCAGACTTGCACCTTCCT
CGTGCGGCGGGCTGCAGTACATCAGTGGAGATGGTTTACACCTGCGCCTGCGGGCCCAGGCTGA
ATCCAGCCCACAGCCGATTTCAGGGTTTAATCAAAGCTTGCAAGCCCAAGAATGTTGCTCATTT
TATTGCCAGTCCTGTGGTGAAGTCACGATAAAGGACAGGAAGCTCCTCAGGGTGCTCCCCCTGC
CCAGTGAGAACTGGAGCGCTCTGGTTGGAGAGTGGTGCTGTCATCCCGACCCCTTCGCTAATAA
GCCTCTCCATCCACGGGAGAATGACTGTTTTGTTGGGGATTCTTTCTTTTTAGTGAATTCGAGA
AGTGATTTGGAGCAGGAACCAAAAGCAAATACCAAAGTCATTTGTAAGCGTTGCAAGGTAATGT
TGGGAGAGACCGTATCATCAGAAACAACCAAATTTTACATGACAGAGGTAATCGTCCAGCCATC
TGAGGGAAGTTTCCCTAACATACCAAGGTCTCAGTTTGTTCAGAGCGTTATTGCCCGGTGCCTG
GTGGAACTCTGCACTGCTAGAAGCACTTTCAGATTCACCATTCAAGGCCAGGACGGCAAGGTGT
ATATCTTGCTCTGGGTGTTGAACTCAGACAGTTTGGTGATGGAACCTCTGAGTAGTTCCGGTTG
TATCAGGAAGTTCCCACTGTTGGAAGACTCATTGGAAGCTGACTCTGGCTCTGCCTGGAACGCC
ATCAAAGTCCTCTACCAGCCCTGTATCAAAAGCAGGAATAAAGAGCTTGCCAGCTCCTGGGAAG
GTGACATCAGTGTCCACCCTTTAACCCTGCCCTCCACAACCTGTTTGGAGCTGCTGTTGATACT
ATCGAGGAACAATGCCTCCCTACCTCTGTCCCTTCGCCAAATGAATTCTTTTCAGCTTTGGTGC
TCTCATTGCAAAACCTGATGTAGGAGCTCAGCAGGAAGCTGATGTGGAAACTCAGCAGGTGGCC
TTTTTGAAGATGTAACTGTGGAAGCTGCAGCTTTCTGGTCTACCAGCAGACAGCTCTCCAGCAC
AGAATACAGCCAAGGCCAGCAGGTAGCTCTGTGAGCACAGCCTGCTGACATGAACAAGAACTAA
GCTGCAGAACAGGGCCTTGTGCTGAAATTTCCAGTTTTTCTTGTTTGCATTTATTCTCTAAGAG
TTGACTTTAGATCCCTGCAAACTCAAGGCTACAAGGAAAGTCGTAGTGTTGTAGTAGCAGGTTG
TCGGCAGGTTAAGTATAGAAGTTGCACCTCTACTCCCACAGAGAGGAATATTCAAATCGGCACT
GCGTCAGCACCACCTGGAAGCATATTAGCTAATGGAAACCCATCTGTCCTGTGTGAACACAGCG
AGGGAACTTCACTGGAGAGCTGAGTGTCAACTGCTCTAAATCCTGGGAAATAAACTTTTAAAGA
GTTCCAGGTTTGTTTAAAGCATGTCTTTAAAAACTAAAATATACAAGTTTTCATATCTTATTCA
AAGAAGATGCTTGCTGGTTGGTTGTTGAGTGATTATCCAATTAAAGTTTTCCTGAGGGAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006243479 ⟹ XP_006243541

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	96,125,609 - 96,293,117 (-)	NCBI
mRatBN7.2	8	87,245,503 - 87,413,099 (-)	NCBI
Rnor_6.0	8	93,948,689 - 94,120,477 (-)	NCBI
Rnor_5.0	8	93,463,000 - 93,633,611 (-)	NCBI

Sequence:

show sequence

GACCGCCACTGCCCGATCCCGCCTGGCCGCCGCGCTGCCTCCGCCAGGAAGCCAGCGGCTTGCC
ACGGCCGCACGTGCTCCCACCCAGTCCCAGTTCTGGTAACTGCGGGCTCGGTCCCGCGTGGGCC
CCTGAGTCGGCCATGGCGGTGGTTGAGGCGGAAACACGCGTGTTCCTGGAAGTGCGGAGACGGC
TCCAGAGCGCGCTGCTAATCCTGGGGGAGCCAGATGAAGGAGGGATGAACCTGGACATATCCGT
AACGCCTACCTCTCTTTTGATGAGAAGCCCTGACGGCTGCACCGAGATCCGGCTTCCAGCAGGG
GTCAGACTTGCACCTTCCTCGTGCGGCGGGCTGCAGTACATCAGTGGAGATGGTTTACACCTGC
GCCTGCGGGCCCAGGCTGAATCCAGCCCACAGCCGATTTCAGGGTTTAATCAAAGCTTGCAAGC
CCAAGAATGTTGCTCATTTTATTGCCAGTCCTGTGGTGAAGTCACGATAAAGGACAGGAAGCTC
CTCAGGGTGCTCCCCCTGCCCAGTGAGAACTGGAGCGCTCTGGTTGGAGAGTGGTGCTGTCATC
CCGACCCCTTCGCTAATAAGCCTCTCCATCCACGGGAGAATGACTGTTTTGTTGGGGATTCTTT
CTTTTTAGTGAATTCGAGAAGTGATTTGGAGCAGGAACCAAAAGCAAATACCAAAGTCATTTGT
AAGCGTTGCAAGGTAATGTTGGGAGAGACCGTATCATCAGAAACAACCAAATTTTACATGACAG
AGGTAATCGTCCAGCCATCTGAGGGAAGTTTCCCTAACATACCAAGGTCTCAGTTTGTTCAGAG
CGTTATTGCCCGGTGCCTGGTGGAACTCTGCACTGCTAGAAGCACTTTCAGATTCACCATTCAA
GGCCAGGACGGCAAGGTGTATATCTTGCTCTGGGTGTTGAACTCAGACAGTTTGGTGATGGAAC
CTCTGAGTAGTTCCGGTTGTATCAGGAAGTTCCCACTGTTGGAAGACTCATTGGAAGCTGACTC
TGGCTCTGCCTGGAACGCCATCAAAGTCCTCTACCAGCCCTGTATCAAAAGCAGGAATAAAGAG
CTTGCCAGCTCCTGGGAAGGTGACATCAGTGTCCACCCTTTAACCCTGCCCTCCACAACCTGTT
TGGAGCTGCTGTTGATACTATCGAGGAACAATGCCTCCCTACCTCTGTCCCTTCGCCAAATGAA
TTCTTTTCAGGTGGCCTTTTTGAAGATGTAACTGTGGAAGCTGCAGCTTTCTGGTCTACCAGCA
GACAGCTCTCCAGCACAGAATACAGCCAAGGCCAGCAGGTAGCTCTGTGAGCACAGCCTGCTGA
CATGAACAAGAACTAAGCTGCAGAACAGGGCCTTGTGCTGAAATTTCCAGTTTTTCTTGTTTGC
ATTTATTCTCTAAGAGTTGACTTTAGATCCCTGCAAACTCAAGGCTACAAGGAAAGTCGTAGTG
TTGTAGTAGCAGGTTGTCGGCAGGTTAAGTATAGAAGTTGCACCTCTACTCCCACAGAGAGGAA
TATTCAAATCGGCACTGCGTCAGCACCACCTGGAAGCATATTAGCTAATGGAAACCCATCTGTC
CTGTGTGAACACAGCGAGGGAACTTCACTGGAGAGCTGAGTGTCAACTGCTCTAAATCCTGGGA
AATAAACTTTTAAAGAGCTCCAGGTTTGTTTAAAGCATGTCTTTAAAAACTAAAATATACAAGT
TTTCATATCTTATTCAAAGAAGATGCTTGCTGGTTGGTTGTTGAGTGATTATCCAATTAAAGTT
TTCCTGAGGGCATAAAACTGCATGTGTTCCTTTTGTTCCTTATTTCCTTCACCACGTGCTATTG
CAAATTAATAAATGTACAACGCCA

hide sequence

RefSeq Acc Id:

XM_039081531 ⟹ XP_038937459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	96,245,529 - 96,293,121 (-)	NCBI
mRatBN7.2	8	87,365,500 - 87,413,103 (-)	NCBI

RefSeq Acc Id:

XM_039081532 ⟹ XP_038937460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	96,183,359 - 96,293,121 (-)	NCBI
mRatBN7.2	8	87,303,330 - 87,413,103 (-)	NCBI

RefSeq Acc Id:

XM_063265560 ⟹ XP_063121630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	96,125,609 - 96,293,120 (-)	NCBI

RefSeq Acc Id:

XR_001839187

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	96,125,609 - 96,293,117 (-)	NCBI
mRatBN7.2	8	87,245,503 - 87,413,099 (-)	NCBI
Rnor_6.0	8	93,948,689 - 94,120,477 (-)	NCBI

Sequence:

show sequence

GACCGCCACTGCCCGATCCCGCCTGGCCGCCGCGCTGCCTCCGCCAGGAAGCCAGCGGCTTGCC
ACGGCCGCACGTGCTCCCACCCAGTCCCAGTTCTGGTAACTGCGGGCTCGGTCCCGCGTGGGCC
CCTGAGTCGGCCATGGCGGTGGTTGAGGCGGAAACACGCGTGTTCCTGGAAGTGCGGAGACGGC
TCCAGAGCGCGCTGCTAATCCTGGGGGAGCCAGATGAAGGAGGGATGAACCTGGACATATCCGT
AACGCCTACCTCTCTTTTGATGAGAAGCCCTGACGGCTGCACCGAGATCCGGCTTCCAGCAGGG
GTCAGACTTGCACCTTCCTCGTGCGGCGGGCTGCAGTACATCAGTGGAGATGGTTTACACCTGC
GCCTGCGGGCCCAGGCTGAATCCAGCCCACAGCCGATTTCAGGGTTTAATCAAAGCTTGCAAGC
CCAAGAATGTTGCTCATTTTATTGCCAGTCCTGTGGTGAAGTCACGATAAAGGACAGGAAGCTC
CTCAGGGTGCTCCCCCTGCCCAGTGAGAACTGGAGCGCTCTGGTTGGAGAGTGGTGCTGTCATC
CCGACCCCTTCGCTAATAAGCCTCTCCATCCACGGGAGAATGACTGTTTTGTTGGGGATTCTTT
CTTTTTAGTGAATTCGAGAAGTGATTTGGAGCAGGAACCAAAAGCAAATACCAAAGTCATTTGT
AAGCGTTGCAAGGTAATGTTGGGAGAGACCGTATCATCAGAAACAACCAAATTTTACATGACAG
AGGTAATCGTCCAGCCATCTGAGGGAAGTTTCCCTAACATACCAAGGTCTCAGTTTGTTCAGAG
CGTTATTGCCCGGTGCCTGGTGGAACTCTGCACTGCTAGAAGCACTTTCAGATTCACCATTCAA
GGCCAGGACGGCAAGGTGTATATCTTGCTCTGGGTGTTGAACTCAGACAGTTTGGTGATGGAAC
CTCTGAGTAGTTCCGGTTGTATCAGGAAGTTCCCACTGTTGGAAGACTCATTGGAAGCTGACTC
TGGCTCTGCCTGGAACGCCATCAAAGTCCTCTACCAGCCCTGTATCAAAAGCAGGAATAAAGAG
CTTGCCAGCTCCTGGGAAGGTGACATCAGTGTCCACCCTTTAACCCTGCCCTCCACAACCTGTT
TGGAGCTGCTGTTGATACTATCGAGGAACAATGCCTCCCTACCTCTGTCCCTTCGCCAAATGAA
TTCTTTTCAGGTGGCCTTTTTGAAGATGTAACTGTGGAAGCTGCAGCTTTCTGGTCTACCAGCA
GACAGCTCTCCAGCACAGAATACAGCCAAGGCCAGCAGAGAGGAATATTCAAATCGGCACTGCG
TCAGCACCACCTGGAAGCATATTAGCTAATGGAAACCCATCTGTCCTGTGTGAACACAGCGAGG
GAACTTCACTGGAGAGCTGAGTGTCAACTGCTCTAAATCCTGGGAAATAAACTTTTAAAGAGCT
CCAGGTTTGTTTAAAGCATGTCTTTAAAAACTAAAATATACAAGTTTTCATATCTTATTCAAAG
AAGATGCTTGCTGGTTGGTTGTTGAGTGATTATCCAATTAAAGTTTTCCTGAGGGCATAAAACT
GCATGTGTTCCTTTTGTTCCTTATTTCCTTCACCACGTGCTATTGCAAATTAATAAATGTACAA
CGCCA

hide sequence

RefSeq Acc Id:

XR_005487831

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	96,125,609 - 96,293,118 (-)	NCBI
mRatBN7.2	8	87,245,503 - 87,413,101 (-)	NCBI

RefSeq Acc Id:

XR_005487832

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	96,125,609 - 96,293,118 (-)	NCBI
mRatBN7.2	8	87,245,503 - 87,413,101 (-)	NCBI

RefSeq Acc Id:

XR_005487834

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	96,125,609 - 96,293,122 (-)	NCBI
mRatBN7.2	8	87,245,503 - 87,413,104 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001034699	(Get FASTA)	NCBI Sequence Viewer
	NP_001420705	(Get FASTA)	NCBI Sequence Viewer
	NP_001420706	(Get FASTA)	NCBI Sequence Viewer
	NP_001420707	(Get FASTA)	NCBI Sequence Viewer
	XP_006243541	(Get FASTA)	NCBI Sequence Viewer
	XP_038937459	(Get FASTA)	NCBI Sequence Viewer
	XP_038937460	(Get FASTA)	NCBI Sequence Viewer
	XP_063121630	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI01917	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014600.4
	ENSRNOP00000071165.2
	ENSRNOP00055005389
	ENSRNOP00060015209
	ENSRNOP00065015584
GenBank Protein	Q3T1H6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001034699 ⟸ NM_001039610

- UniProtKB:

Q3T1H6 (UniProtKB/Swiss-Prot), A0A0G2JZS6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAVVEAETRVFLEVRRRLQSALLILGEPDEGGMNLDISVTPTSLLMRSPDGCTEIRLPAGVRLA
PSSCGGLQYISGDGLHLRLRAQAESSPQPISGFNQSLQAQECCSFYCQSCGEVTIKDRKLLRVL
PLPSENWSALVGEWCCHPDPFANKPLHPRENDCFVGDSFFLVNSRSDLEQEPKANTKVICKRCK
VMLGETVSSETTKFYMTEVIVQPSEGSFPNIPRSQFVQSVIARCLVELCTARSTFRFTIQGQDG
KVYILLWVLNSDSLVMEPLSSSGCIRKFPLLEDSLEADSGSAWNAIKVLYQPCIKSRNKELASS
WEGDISVHPLTLPSTTCLELLLILSRNNASLPLSLRQMNSFQLWCSHCKT

hide sequence

RefSeq Acc Id:	XP_006243541 ⟸ XM_006243479
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JZS6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVVEAETRVFLEVRRRLQSALLILGEPDEGGMNLDISVTPTSLLMRSPDGCTEIRLPAGVRLA PSSCGGLQYISGDGLHLRLRAQAESSPQPISGFNQSLQAQECCSFYCQSCGEVTIKDRKLLRVL PLPSENWSALVGEWCCHPDPFANKPLHPRENDCFVGDSFFLVNSRSDLEQEPKANTKVICKRCK VMLGETVSSETTKFYMTEVIVQPSEGSFPNIPRSQFVQSVIARCLVELCTARSTFRFTIQGQDG KVYILLWVLNSDSLVMEPLSSSGCIRKFPLLEDSLEADSGSAWNAIKVLYQPCIKSRNKELASS WEGDISVHPLTLPSTTCLELLLILSRNNASLPLSLRQMNSFQVAFLKM hide sequence

Ensembl Acc Id:

ENSRNOP00000071165 ⟸ ENSRNOT00000080195

Ensembl Acc Id:

ENSRNOP00000014600 ⟸ ENSRNOT00000014600

RefSeq Acc Id:	XP_038937460 ⟸ XM_039081532
- Peptide Label:	isoform X3
- UniProtKB:	A6I1U0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937459 ⟸ XM_039081531
- Peptide Label:	isoform X3
- UniProtKB:	A6I1U0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121630 ⟸ XM_063265560
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3T1H6-F1-model_v2	AlphaFold	Q3T1H6	1-370	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696157

Promoter ID:

EPDNEW_R6682

Type:

initiation region

Name:

Ube3d_1

Description:

ubiquitin protein ligase E3D

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	94,120,473 - 94,120,533	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306773	AgrOrtholog
BioCyc Gene	G2FUF-29644	BioCyc
Ensembl Genes	ENSRNOG00000010802	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055004562	UniProtKB/Swiss-Prot
	ENSRNOG00060011464	UniProtKB/Swiss-Prot
	ENSRNOG00065012464	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000014600.6	UniProtKB/Swiss-Prot
	ENSRNOT00000080195.2	UniProtKB/TrEMBL
	ENSRNOT00055007224	UniProtKB/Swiss-Prot
	ENSRNOT00060019391	UniProtKB/Swiss-Prot
	ENSRNOT00065020286	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7935691	IMAGE-MGC_LOAD
InterPro	UBQ-conj_enz_E2-bd_prot	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:315863	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124836	IMAGE-MGC_LOAD
NCBI Gene	315863	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE E3D	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR31531	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	HECT_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ube3d	PhenoGen
RatGTEx	ENSRNOG00000010802	RatGTEx
	ENSRNOG00055004562	RatGTEx
	ENSRNOG00060011464	RatGTEx
	ENSRNOG00065012464	RatGTEx
UniProt	A0A0G2JZS6	ENTREZGENE, UniProtKB/TrEMBL
	A6I1U0	ENTREZGENE, UniProtKB/TrEMBL
	Q3T1H6	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-03-04	Ube3d	ubiquitin protein ligase E3D	Ube2cbp	ubiquitin-conjugating enzyme E2C binding protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Ube2cbp	ubiquitin-conjugating enzyme E2C binding protein	RGD1306773	hypothetical LOC315863	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1306773	hypothetical LOC315863	RGD1306773_predicted	hypothetical LOC315863 (predicted)	Symbol and Name status set to approved	1299863	APPROVED
2005-01-20	RGD1306773_predicted	hypothetical LOC315863 (predicted)	LOC315863_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC315863_predicted	hypothetical LOC315863 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar