Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Familial Prostate Cancer | | ISO | ATAT1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29892016 | |
|
Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Familial Prostate Cancer | | ISO | ATAT1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29892016 | |
|
|
|
|
|
|
|
|
|
|
|
|
# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:12477932 | PMID:16751776 | PMID:20829795 | PMID:22972992 | PMID:23071314 | PMID:23126280 | PMID:23502856 | PMID:23720746 | PMID:23748901 | PMID:24906155 | PMID:26700226 | PMID:27314403 |
PMID:28505206 | PMID:33626373 |
Atat1 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATAT1 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Atat1 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Atat1 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATAT1 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATAT1 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Atat1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATAT1 (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ATAT1 (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Atat1 (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Atat1
52 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
BE117058 |
|
||||||||||||||||||||||||||||||||||||||||
RH128043 |
|
||||||||||||||||||||||||||||||||||||||||
AI548047 |
|
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 20 | 4 | 4 | 2 | 4 | 66 | 20 | 33 | 1 | ||||
Low | 3 | 23 | 53 | 37 | 17 | 37 | 6 | 9 | 8 | 15 | 8 | 10 | 6 |
Below cutoff | 2 | 2 | 2 |
RefSeq Acc Id: | ENSRNOT00000001065 ⟹ ENSRNOP00000001065 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000001077 ⟹ ENSRNOP00000001077 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000078758 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000079253 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000079654 ⟹ ENSRNOP00000073934 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000079738 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000080158 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000080419 ⟹ ENSRNOP00000074047 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000082342 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000082345 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000086216 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000086503 ⟹ ENSRNOP00000075030 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000087295 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000089667 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000090225 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000091735 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | NM_212498 ⟹ NP_997663 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_006255950 ⟹ XP_006256012 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
|
||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_006255951 ⟹ XP_006256013 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
|
||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_039098796 ⟹ XP_038954724 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039098797 ⟹ XP_038954725 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_063279200 ⟹ XP_063135270 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063279201 ⟹ XP_063135271 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063279202 ⟹ XP_063135272 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063279203 ⟹ XP_063135273 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063279204 ⟹ XP_063135274 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063279205 ⟹ XP_063135275 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063279206 ⟹ XP_063135276 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063279207 ⟹ XP_063135277 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | NP_997663 ⟸ NM_212498 |
- UniProtKB: | Q6MG11 (UniProtKB/Swiss-Prot), A6KT73 (UniProtKB/TrEMBL), A0A8L2R8C1 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006256012 ⟸ XM_006255950 |
- Peptide Label: | isoform X9 |
- UniProtKB: | A0A8I6A4A0 (UniProtKB/TrEMBL), A6KT75 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006256013 ⟸ XM_006255951 |
- Peptide Label: | isoform X10 |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000074047 ⟸ ENSRNOT00000080419 |
RefSeq Acc Id: | ENSRNOP00000073934 ⟸ ENSRNOT00000079654 |
RefSeq Acc Id: | ENSRNOP00000075030 ⟸ ENSRNOT00000086503 |
RefSeq Acc Id: | ENSRNOP00000001065 ⟸ ENSRNOT00000001065 |
RefSeq Acc Id: | XP_038954724 ⟸ XM_039098796 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A6KT74 (UniProtKB/TrEMBL), A0A0G2K9K5 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038954725 ⟸ XM_039098797 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A0G2K6T3 (UniProtKB/TrEMBL), A0A0G2K9K5 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSRNOP00000001077 ⟸ ENSRNOT00000001077 |
RefSeq Acc Id: | XP_063135276 ⟸ XM_063279206 |
- Peptide Label: | isoform X11 |
RefSeq Acc Id: | XP_063135272 ⟸ XM_063279202 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063135273 ⟸ XM_063279203 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_063135275 ⟸ XM_063279205 |
- Peptide Label: | isoform X8 |
RefSeq Acc Id: | XP_063135270 ⟸ XM_063279200 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_063135274 ⟸ XM_063279204 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_063135271 ⟸ XM_063279201 |
- Peptide Label: | isoform X3 |
- UniProtKB: | G3V628 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063135277 ⟸ XM_063279207 |
- Peptide Label: | isoform X12 |
- UniProtKB: | A6KT77 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q6MG11-F1-model_v2 | AlphaFold | Q6MG11 | 1-421 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13701299 | ||||||||
Promoter ID: | EPDNEW_R11819 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Atat1_1 | ||||||||
Description: | alpha tubulin acetyltransferase 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | RGD:1303066 | AgrOrtholog |
BioCyc Gene | G2FUF-4785 | BioCyc |
Ensembl Genes | ENSRNOG00000000809 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000001065.6 | UniProtKB/TrEMBL |
ENSRNOT00000001077.7 | UniProtKB/TrEMBL | |
ENSRNOT00000079654.2 | UniProtKB/TrEMBL | |
ENSRNOT00000080158.2 | UniProtKB/TrEMBL | |
ENSRNOT00000080419 | ENTREZGENE | |
ENSRNOT00000080419.2 | UniProtKB/TrEMBL | |
ENSRNOT00000086503.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.40.630.30 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
6.20.370.120 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | Acyl_CoA_acyltransferase | UniProtKB/TrEMBL |
Atat | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GNAT_ATAT | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:361789 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
NCBI Gene | 361789 | ENTREZGENE |
PANTHER | ALPHA-TUBULIN N-ACETYLTRANSFERASE 1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR12327 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Acetyltransf_16 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Atat1 | PhenoGen |
PROSITE | GNAT_ATAT | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000000809 | RatGTEx |
Superfamily-SCOP | SSF55729 | UniProtKB/TrEMBL |
UniProt | A0A0G2K6T3 | ENTREZGENE, UniProtKB/TrEMBL |
A0A0G2K9K5 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6A4A0 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8L2PZR1_RAT | UniProtKB/TrEMBL | |
A0A8L2R8C1 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KT73 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KT74 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KT75 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KT77 | ENTREZGENE, UniProtKB/TrEMBL | |
ATAT_RAT | UniProtKB/Swiss-Prot | |
G3V628 | ENTREZGENE, UniProtKB/TrEMBL | |
Q6MG11 | ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2011-05-26 | Atat1 | alpha tubulin acetyltransferase 1 | RGD1303066 | similar to RIKEN cDNA 2610110G12 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-11-17 | RGD1303066 | similar to RIKEN cDNA 2610110G12 | FLJ13158 | hypothetical protein FLJ13158 | Symbol and Name updated | 1299863 | APPROVED |
2005-09-30 | FLJ13158 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |