Gpcpd1 (glycerophosphocholine phosphodiesterase 1) - Rat Genome Database

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Gene: Gpcpd1 (glycerophosphocholine phosphodiesterase 1) Rattus norvegicus
Analyze
Symbol: Gpcpd1
Name: glycerophosphocholine phosphodiesterase 1
RGD ID: 735140
Description: Predicted to enable glycerophosphocholine phosphodiesterase activity. Predicted to be involved in glycerophospholipid catabolic process. Predicted to act upstream of or within skeletal muscle tissue development. Predicted to be located in cytoplasm. Orthologous to human GPCPD1 (glycerophosphocholine phosphodiesterase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5-triiodo-L-thyronine; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Gde5; glycerophosphocholine phosphodiesterase GDE1 homolog; glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae); glycerophosphocholine phosphodiesterase GPCPD1; glycerophosphodiester phosphodiesterase 5; hypothetical protein LK44; LOC362219; Prei4; preimplantation protein 4; putative glycerophosphocholine phosphodiesterase GPCPD1; putative glycerophosphodiester phosphodiesterase 5; RGD735140
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83140,240,574 - 140,285,469 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3140,240,575 - 140,285,372 (-)EnsemblGRCr8
mRatBN7.23119,787,681 - 119,832,550 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3119,787,682 - 119,832,517 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3123,684,043 - 123,728,434 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03132,285,068 - 132,329,435 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03129,940,164 - 129,984,559 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03125,169,131 - 125,213,598 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3125,169,135 - 125,213,607 (-)Ensemblrn6Rnor6.0
Rnor_5.03131,661,587 - 131,706,004 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43120,301,433 - 120,347,942 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3118,577,563 - 118,640,064 (-)NCBICelera
RGSC_v3.13120,207,009 - 120,253,515 (-)NCBI
Cytogenetic Map3q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
Acetyl tributyl citrate  (ISO)
acrylamide  (EXP,ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cantharidin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clothianidin  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyanocob(III)alamin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (ISO)
genistein  (ISO)
glycine betaine  (EXP,ISO)
GSK-J4  (ISO)
indometacin  (ISO)
isoprenaline  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
parathion  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
prothioconazole  (ISO)
rac-lactic acid  (ISO)
resorcinol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Blood-brain barrier genomics. Li JY, etal., J Cereb Blood Flow Metab. 2001 Jan;21(1):61-8.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20576599  


Genomics

Comparative Map Data
Gpcpd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83140,240,574 - 140,285,469 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3140,240,575 - 140,285,372 (-)EnsemblGRCr8
mRatBN7.23119,787,681 - 119,832,550 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3119,787,682 - 119,832,517 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3123,684,043 - 123,728,434 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03132,285,068 - 132,329,435 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03129,940,164 - 129,984,559 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03125,169,131 - 125,213,598 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3125,169,135 - 125,213,607 (-)Ensemblrn6Rnor6.0
Rnor_5.03131,661,587 - 131,706,004 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43120,301,433 - 120,347,942 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3118,577,563 - 118,640,064 (-)NCBICelera
RGSC_v3.13120,207,009 - 120,253,515 (-)NCBI
Cytogenetic Map3q36NCBI
GPCPD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38205,544,439 - 5,611,006 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl205,544,404 - 5,611,045 (-)Ensemblhg38GRCh38
GRCh37205,525,085 - 5,591,652 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36205,473,080 - 5,539,672 (-)NCBIBuild 36Build 36hg18NCBI36
Celera205,595,915 - 5,663,197 (-)NCBICelera
Cytogenetic Map20p12.3NCBI
HuRef205,480,738 - 5,547,293 (-)NCBIHuRef
CHM1_1205,525,789 - 5,592,376 (-)NCBICHM1_1
T2T-CHM13v2.0205,585,120 - 5,651,341 (-)NCBIT2T-CHM13v2.0
Gpcpd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,371,002 - 132,420,173 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,371,002 - 132,429,649 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382132,529,082 - 132,578,248 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,529,082 - 132,587,729 (-)Ensemblmm10GRCm38
MGSCv372132,354,819 - 132,403,984 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362132,220,839 - 132,269,619 (-)NCBIMGSCv36mm8
Celera2133,755,816 - 133,804,873 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.57NCBI
Gpcpd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541516,060,931 - 16,118,059 (-)Ensembl
ChiLan1.0NW_00495541516,062,068 - 16,118,029 (-)NCBIChiLan1.0ChiLan1.0
GPCPD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2216,474,795 - 6,541,510 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1206,473,823 - 6,538,335 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0205,547,190 - 5,613,849 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1205,336,003 - 5,397,458 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl205,336,003 - 5,397,448 (-)EnsemblpanPan2panpan1.1
GPCPD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12416,153,622 - 16,203,155 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2416,148,035 - 16,220,757 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2415,970,494 - 16,025,121 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02416,551,569 - 16,606,256 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2416,539,682 - 16,606,242 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12416,157,889 - 16,212,499 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02416,266,343 - 16,320,996 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02416,597,821 - 16,652,719 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gpcpd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640164,970,221 - 165,026,770 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648513,400,995 - 13,458,146 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648513,401,598 - 13,458,125 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPCPD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1714,420,658 - 14,476,212 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11714,420,656 - 14,476,223 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21715,458,697 - 15,510,302 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPCPD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,522,953 - 32,585,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl232,523,236 - 32,584,184 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607111,949,561 - 12,013,632 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpcpd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247416,472,558 - 6,528,865 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247416,472,558 - 6,529,698 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gpcpd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15112,238,572 - 112,283,213 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gpcpd1
156 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:125
Interacting mature miRNAs:144
Transcripts:ENSRNOT00000028890
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3136091420155634702Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat

Markers in Region
BE106405  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23119,788,240 - 119,788,409 (+)MAPPERmRatBN7.2
Rnor_6.03125,169,374 - 125,169,542NCBIRnor6.0
Rnor_5.03131,661,830 - 131,661,998UniSTSRnor5.0
RGSC_v3.43120,301,676 - 120,301,844UniSTSRGSC3.4
Celera3118,577,806 - 118,577,974UniSTS
RH 3.4 Map31027.0UniSTS
Cytogenetic Map3q36UniSTS
RH129338  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23119,791,327 - 119,791,508 (+)MAPPERmRatBN7.2
Rnor_6.03125,172,461 - 125,172,641NCBIRnor6.0
Rnor_5.03131,664,917 - 131,665,097UniSTSRnor5.0
RGSC_v3.43120,304,764 - 120,304,944UniSTSRGSC3.4
Celera3118,580,893 - 118,581,073UniSTS
RH 3.4 Map31029.71UniSTS
Cytogenetic Map3q36UniSTS
MARC_12069-12070:1004549810:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83140,245,596 - 140,246,264 (+)Marker Load Pipeline
mRatBN7.23119,792,703 - 119,793,371 (+)MAPPERmRatBN7.2
Rnor_6.03125,173,837 - 125,174,504NCBIRnor6.0
Rnor_5.03131,666,293 - 131,666,960UniSTSRnor5.0
RGSC_v3.43120,306,140 - 120,306,807UniSTSRGSC3.4
Celera3118,582,269 - 118,582,936UniSTS
Cytogenetic Map3q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000078070   ⟹   ENSRNOP00000074931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3140,240,575 - 140,285,372 (-)Ensembl
mRatBN7.2 Ensembl3119,787,682 - 119,832,480 (-)Ensembl
Rnor_6.0 Ensembl3125,169,135 - 125,213,607 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109724   ⟹   ENSRNOP00000086333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3140,240,891 - 140,275,906 (-)Ensembl
mRatBN7.2 Ensembl3119,787,688 - 119,832,517 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167844   ⟹   ENSRNOP00000107576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3140,240,891 - 140,275,906 (-)Ensembl
RefSeq Acc Id: NM_198779   ⟹   NP_942074
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83140,240,891 - 140,285,345 (-)NCBI
mRatBN7.23119,787,998 - 119,832,453 (-)NCBI
Rnor_6.03125,169,131 - 125,213,598 (-)NCBI
Rnor_5.03131,661,587 - 131,706,004 (-)NCBI
RGSC_v3.43120,301,433 - 120,347,942 (-)RGD
Celera3118,577,563 - 118,640,064 (-)RGD
Sequence:
RefSeq Acc Id: XM_039105465   ⟹   XP_038961393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83140,240,574 - 140,285,456 (-)NCBI
mRatBN7.23119,787,681 - 119,832,544 (-)NCBI
RefSeq Acc Id: XM_039105466   ⟹   XP_038961394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83140,240,574 - 140,285,428 (-)NCBI
mRatBN7.23119,787,681 - 119,832,545 (-)NCBI
RefSeq Acc Id: XM_063284166   ⟹   XP_063140236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83140,240,574 - 140,285,469 (-)NCBI
RefSeq Acc Id: XM_063284167   ⟹   XP_063140237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83140,251,602 - 140,285,456 (-)NCBI
RefSeq Acc Id: NP_942074   ⟸   NM_198779
- UniProtKB: Q80VJ4 (UniProtKB/Swiss-Prot),   A6HQG6 (UniProtKB/TrEMBL),   A0A8I6GDY1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074931   ⟸   ENSRNOT00000078070
RefSeq Acc Id: XP_038961394   ⟸   XM_039105466
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9B2 (UniProtKB/TrEMBL),   A0A8I6GDY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961393   ⟸   XM_039105465
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9B2 (UniProtKB/TrEMBL),   A0A8I6GDY1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000086333   ⟸   ENSRNOT00000109724
RefSeq Acc Id: XP_063140236   ⟸   XM_063284166
- Peptide Label: isoform X2
- UniProtKB: Q80VJ4 (UniProtKB/Swiss-Prot),   A6HQG6 (UniProtKB/TrEMBL),   A0A8I6GDY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140237   ⟸   XM_063284167
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000107576   ⟸   ENSRNOT00000167844
Protein Domains
CBM20   GP-PDE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80VJ4-F1-model_v2 AlphaFold Q80VJ4 1-672 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692457
Promoter ID:EPDNEW_R2980
Type:initiation region
Name:Gpcpd1_1
Description:glycerophosphocholine phosphodiesterase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03125,213,625 - 125,213,685EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735140 AgrOrtholog
BioCyc Gene G2FUF-47775 BioCyc
Ensembl Genes ENSRNOG00000053201 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000078070 ENTREZGENE
  ENSRNOT00000167844 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
  3.20.20.190 UniProtKB/Swiss-Prot
InterPro Carb-bd-like_fold UniProtKB/Swiss-Prot
  CBM20_GPCPD1 UniProtKB/Swiss-Prot
  CBM_fam20 UniProtKB/Swiss-Prot
  GDPD UniProtKB/Swiss-Prot
  GP_PDE_dom UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  PLC-like_Pdiesterase_TIM-brl UniProtKB/Swiss-Prot
KEGG Report rno:362219 UniProtKB/Swiss-Prot
NCBI Gene 362219 ENTREZGENE
PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE UniProtKB/Swiss-Prot
  PTHR22958:SF1 UniProtKB/Swiss-Prot
Pfam C2_GDE1 UniProtKB/Swiss-Prot
  CBM_20 UniProtKB/Swiss-Prot
  GDPD UniProtKB/Swiss-Prot
PhenoGen Gpcpd1 PhenoGen
PROSITE CBM20 UniProtKB/Swiss-Prot
  GP_PDE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000053201 RatGTEx
SMART CBM_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49452 UniProtKB/Swiss-Prot
  SSF51695 UniProtKB/Swiss-Prot
UniProt A0A0G2K9B2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GDY1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LYX8_RAT UniProtKB/TrEMBL
  A6HQG6 ENTREZGENE, UniProtKB/TrEMBL
  GPCP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-01 Gpcpd1  glycerophosphocholine phosphodiesterase 1  Gpcpd1  glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-25 Gpcpd1  glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)  RGD735140  hypothetical protein LK44  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 RGD735140  hypothetical protein LK44  LOC362219    Symbol updated 1299863 APPROVED
2005-10-12 LOC362219        Symbol and Name status set to provisional 70820 PROVISIONAL