Srpx (sushi-repeat-containing protein, X-linked) - Rat Genome Database

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Gene: Srpx (sushi-repeat-containing protein, X-linked) Rattus norvegicus
Analyze
Symbol: Srpx
Name: sushi-repeat-containing protein, X-linked (Ensembl:sushi repeat containing protein X-linked)
RGD ID: 70950
Description: Predicted to be involved in phagolysosome assembly. Predicted to act upstream of or within several processes, including negative regulation of cell proliferation involved in contact inhibition; positive regulation of extrinsic apoptotic signaling pathway in absence of ligand; and response to endoplasmic reticulum stress. Predicted to be located in autophagosome and endoplasmic reticulum. Orthologous to human SRPX (sushi repeat containing protein X-linked); INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: down-regulated by v-src; down-regulated by v-src gene; Drs; MGC105430; sushi repeat-containing protein SRPX; sushi-repeat-containing protein; sushi-repeat-containing protein X chromosome; sushi-repeat-containing protein, X chromosome
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X15,349,498 - 15,420,389 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX15,349,440 - 15,420,392 (+)EnsemblGRCr8
mRatBN7.2X12,676,984 - 12,751,296 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX12,566,645 - 12,747,882 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX12,868,680 - 12,938,959 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X16,365,624 - 16,435,903 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X12,622,193 - 12,692,466 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X14,146,618 - 14,220,756 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX14,150,038 - 14,220,662 (-)Ensemblrn6Rnor6.0
Rnor_5.0X14,932,352 - 15,003,129 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X24,833,279 - 24,904,349 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX13,286,935 - 13,357,502 (+)NCBICelera
RGSC_v3.1X24,886,676 - 24,957,818 (+)NCBI
Cytogenetic MapXq12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetylsalicylic acid  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
alachlor  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
cannabidiol  (EXP)
carbamazepine  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
choline  (ISO)
cisplatin  (ISO)
clotrimazole  (EXP)
cobalt dichloride  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
dimethylarsinic acid  (EXP)
diquat  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
indometacin  (ISO)
irinotecan  (EXP)
L-methionine  (ISO)
medroxyprogesterone acetate  (ISO)
methamphetamine  (EXP)
methimazole  (EXP)
mifepristone  (ISO)
Nutlin-3  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP)
pentanal  (ISO)
pioglitazone  (ISO)
pirinixic acid  (ISO)
progesterone  (EXP,ISO)
propanal  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
XL147  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
autophagosome  (IEA,ISO)
endoplasmic reticulum  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Gene Data Set MGD Curation, June 12, 2002
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Isolation of a novel gene down-regulated by v-src. Pan J, etal., FEBS Lett 1996 Mar 25;383(1-2):21-5.
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12049817   PMID:12152160   PMID:12477932   PMID:15489334   PMID:17088259   PMID:19368996  


Genomics

Comparative Map Data
Srpx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X15,349,498 - 15,420,389 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX15,349,440 - 15,420,392 (+)EnsemblGRCr8
mRatBN7.2X12,676,984 - 12,751,296 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX12,566,645 - 12,747,882 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX12,868,680 - 12,938,959 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X16,365,624 - 16,435,903 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X12,622,193 - 12,692,466 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X14,146,618 - 14,220,756 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX14,150,038 - 14,220,662 (-)Ensemblrn6Rnor6.0
Rnor_5.0X14,932,352 - 15,003,129 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X24,833,279 - 24,904,349 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX13,286,935 - 13,357,502 (+)NCBICelera
RGSC_v3.1X24,886,676 - 24,957,818 (+)NCBI
Cytogenetic MapXq12NCBI
SRPX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X38,149,339 - 38,220,871 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX38,149,336 - 38,220,941 (-)Ensemblhg38GRCh38
GRCh37X38,008,592 - 38,080,124 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X37,893,536 - 37,965,075 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X37,764,808 - 37,836,348NCBI
CeleraX42,146,231 - 42,217,816 (-)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX35,753,942 - 35,824,499 (-)NCBIHuRef
CHM1_1X38,039,638 - 38,111,226 (-)NCBICHM1_1
T2T-CHM13v2.0X37,552,940 - 37,624,469 (-)NCBIT2T-CHM13v2.0
Srpx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X9,904,216 - 9,983,879 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX9,904,216 - 9,983,948 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X10,037,977 - 10,117,640 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX10,037,977 - 10,117,709 (-)Ensemblmm10GRCm38
MGSCv37X9,615,103 - 9,694,787 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X9,194,936 - 9,274,620 (-)NCBIMGSCv36mm8
MGSCv36X7,112,076 - 7,194,962 (-)NCBIMGSCv36mm8
CeleraX7,749,827 - 7,822,706 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX4.62NCBI
Srpx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955601286,069 - 364,235 (-)Ensembl
ChiLan1.0NW_004955601286,092 - 364,235 (-)NCBIChiLan1.0ChiLan1.0
SRPX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X39,797,096 - 39,869,476 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X39,800,472 - 39,872,343 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X30,598,574 - 30,670,464 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X38,306,862 - 38,378,770 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX38,303,313 - 38,378,770 (-)EnsemblpanPan2panpan1.1
SRPX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X32,905,380 - 33,017,642 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX32,745,020 - 33,330,841 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX20,254,098 - 20,366,305 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X32,954,258 - 33,066,884 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX32,954,294 - 33,380,900 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X33,033,807 - 33,146,001 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X33,005,675 - 33,117,858 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X33,047,347 - 33,159,926 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Srpx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X25,169,985 - 25,266,489 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365025,010,682 - 5,107,254 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365025,010,692 - 5,107,221 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRPX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX34,075,579 - 34,198,467 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X34,075,577 - 34,198,462 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X37,892,766 - 38,008,122 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRPX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666133282,452 - 307,339 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srpx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476217,240,816 - 17,347,523 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476217,240,899 - 17,347,430 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Srpx
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X11,179,126 - 11,253,794 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Srpx
386 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:56
Interacting mature miRNAs:65
Transcripts:ENSRNOT00000045753
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X400149324470521Rat

Markers in Region
RH138665  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X15,420,168 - 15,420,313 (+)Marker Load Pipeline
mRatBN7.2X12,747,658 - 12,747,803 (-)MAPPERmRatBN7.2
Rnor_6.0X14,150,111 - 14,150,255NCBIRnor6.0
Rnor_5.0X14,932,432 - 14,932,576UniSTSRnor5.0
RGSC_v3.4X24,904,132 - 24,904,276UniSTSRGSC3.4
CeleraX13,357,285 - 13,357,429UniSTS
RH 3.4 MapX115.0UniSTS
Cytogenetic MapXq13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 151 91 90 59 28 59 6 290 128 11 130 79 92 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000045753   ⟹   ENSRNOP00000048924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX15,349,458 - 15,420,386 (+)Ensembl
mRatBN7.2 EnsemblX12,676,973 - 12,747,881 (+)Ensembl
Rnor_6.0 EnsemblX14,150,038 - 14,220,662 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000067603   ⟹   ENSRNOP00000060034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX15,239,159 - 15,298,999 (+)Ensembl
mRatBN7.2 EnsemblX12,566,645 - 12,626,485 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104202   ⟹   ENSRNOP00000095069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX15,239,480 - 15,298,564 (+)Ensembl
mRatBN7.2 EnsemblX12,566,645 - 12,630,404 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107551   ⟹   ENSRNOP00000093511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX12,717,909 - 12,747,881 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107782   ⟹   ENSRNOP00000094523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX15,349,668 - 15,420,392 (+)Ensembl
mRatBN7.2 EnsemblX12,677,155 - 12,747,882 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108154   ⟹   ENSRNOP00000086725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX15,239,202 - 15,298,999 (+)Ensembl
mRatBN7.2 EnsemblX12,566,645 - 12,719,794 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108262   ⟹   ENSRNOP00000092956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX15,239,159 - 15,298,999 (+)Ensembl
mRatBN7.2 EnsemblX12,566,645 - 12,626,485 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114608   ⟹   ENSRNOP00000083955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX15,349,440 - 15,420,392 (+)Ensembl
mRatBN7.2 EnsemblX12,677,031 - 12,747,882 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118721   ⟹   ENSRNOP00000088888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX15,391,131 - 15,420,386 (+)Ensembl
mRatBN7.2 EnsemblX12,718,621 - 12,747,881 (+)Ensembl
RefSeq Acc Id: NM_022524   ⟹   NP_071969
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X15,349,604 - 15,420,386 (+)NCBI
mRatBN7.2X12,677,091 - 12,747,876 (+)NCBI
Rnor_6.0X14,150,038 - 14,220,662 (-)NCBI
Rnor_5.0X14,932,352 - 15,003,129 (-)NCBI
RGSC_v3.4X24,833,279 - 24,904,349 (+)RGD
CeleraX13,286,935 - 13,357,502 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256683   ⟹   XP_006256745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X15,349,498 - 15,420,389 (+)NCBI
mRatBN7.2X12,676,984 - 12,751,296 (+)NCBI
Rnor_6.0X14,146,618 - 14,220,756 (-)NCBI
Rnor_5.0X14,932,352 - 15,003,129 (-)NCBI
Sequence:
RefSeq Acc Id: NP_071969   ⟸   NM_022524
- Peptide Label: precursor
- UniProtKB: Q5PPK5 (UniProtKB/Swiss-Prot),   Q63769 (UniProtKB/Swiss-Prot),   A6K020 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256745   ⟸   XM_006256683
- Peptide Label: isoform X1
- UniProtKB: A6K020 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048924   ⟸   ENSRNOT00000045753
Ensembl Acc Id: ENSRNOP00000093511   ⟸   ENSRNOT00000107551
Ensembl Acc Id: ENSRNOP00000092956   ⟸   ENSRNOT00000108262
Ensembl Acc Id: ENSRNOP00000083955   ⟸   ENSRNOT00000114608
Ensembl Acc Id: ENSRNOP00000095069   ⟸   ENSRNOT00000104202
Ensembl Acc Id: ENSRNOP00000086725   ⟸   ENSRNOT00000108154
Ensembl Acc Id: ENSRNOP00000060034   ⟸   ENSRNOT00000067603
Ensembl Acc Id: ENSRNOP00000094523   ⟸   ENSRNOT00000107782
Ensembl Acc Id: ENSRNOP00000088888   ⟸   ENSRNOT00000118721
Protein Domains
HYR   Sushi

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63769-F1-model_v2 AlphaFold Q63769 1-464 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701720
Promoter ID:EPDNEW_R12244
Type:initiation region
Name:Srpx_1
Description:sushi-repeat-containing protein, X-linked
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X14,220,681 - 14,220,741EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:70950 AgrOrtholog
BioCyc Gene G2FUF-3026 BioCyc
Ensembl Genes ENSRNOG00000003013 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000039666 Ensembl
  ENSRNOG00000088892 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000045753 ENTREZGENE
  ENSRNOT00000045753.3 UniProtKB/Swiss-Prot
  ENSRNOT00000114608 ENTREZGENE
  ENSRNOT00000114608.1 UniProtKB/Swiss-Prot
Gene3D-CATH Complement Module, domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7309360 IMAGE-MGC_LOAD
InterPro DUF4174 UniProtKB/Swiss-Prot
  HYR_dom UniProtKB/Swiss-Prot
  SRPX-like UniProtKB/Swiss-Prot
  Sushi/SCR/CCP_sf UniProtKB/Swiss-Prot
  Sushi_SCR_CCP_dom UniProtKB/Swiss-Prot
KEGG Report rno:64316 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105430 IMAGE-MGC_LOAD
NCBI Gene 64316 ENTREZGENE
PANTHER PTHR46343 UniProtKB/Swiss-Prot
  PTHR46343:SF1 UniProtKB/Swiss-Prot
Pfam DUF4174 UniProtKB/Swiss-Prot
  HYR UniProtKB/Swiss-Prot
  Sushi UniProtKB/Swiss-Prot
PhenoGen Srpx PhenoGen
PROSITE HYR UniProtKB/Swiss-Prot
  SUSHI UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003013 RatGTEx
  ENSRNOG00000039666 RatGTEx
  ENSRNOG00000088892 RatGTEx
SMART CCP UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57535 UniProtKB/Swiss-Prot
UniProt A0A8I6A4C7_RAT UniProtKB/TrEMBL
  A0A8I6AAL5_RAT UniProtKB/TrEMBL
  A0A8I6AL59_RAT UniProtKB/TrEMBL
  A6K020 ENTREZGENE, UniProtKB/TrEMBL
  A6K021_RAT UniProtKB/TrEMBL
  Q5PPK5 ENTREZGENE
  Q63769 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5PPK5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-23 Srpx  sushi-repeat-containing protein, X-linked  Srpx  sushi-repeat-containing protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-07-09 Srpx  sushi-repeat-containing protein      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference