Stox2 (storkhead box 2) - Rat Genome Database

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Pathways
Gene: Stox2 (storkhead box 2) Rattus norvegicus
Analyze
Symbol: Stox2
Name: storkhead box 2
RGD ID: 708477
Description: Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in embryo development and maternal placenta development. Predicted to act upstream of or within response to bacterium. Predicted to be active in cytoplasm and nucleus. Orthologous to human STOX2 (storkhead box 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: knockout CG10573-PA related; LOC286760; spinelinin; storkhead-box protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81651,580,855 - 51,819,909 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1651,580,798 - 51,815,209 (+)EnsemblGRCr8
mRatBN7.21644,848,179 - 45,087,238 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1644,848,078 - 45,085,105 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1650,380,852 - 50,488,846 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01653,740,740 - 53,848,731 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01649,020,398 - 49,128,351 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01647,994,555 - 48,233,588 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1648,120,864 - 48,228,891 (+)Ensemblrn6Rnor6.0
Rnor_5.01647,711,628 - 47,942,908 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41648,197,064 - 48,305,632 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1642,980,930 - 43,088,967 (+)NCBICelera
RGSC_v3.11648,305,138 - 48,306,242 (+)NCBI
Cytogenetic Map16q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20643876   PMID:23012479  


Genomics

Comparative Map Data
Stox2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81651,580,855 - 51,819,909 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1651,580,798 - 51,815,209 (+)EnsemblGRCr8
mRatBN7.21644,848,179 - 45,087,238 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1644,848,078 - 45,085,105 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1650,380,852 - 50,488,846 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01653,740,740 - 53,848,731 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01649,020,398 - 49,128,351 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01647,994,555 - 48,233,588 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1648,120,864 - 48,228,891 (+)Ensemblrn6Rnor6.0
Rnor_5.01647,711,628 - 47,942,908 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41648,197,064 - 48,305,632 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1642,980,930 - 43,088,967 (+)NCBICelera
RGSC_v3.11648,305,138 - 48,306,242 (+)NCBI
Cytogenetic Map16q11NCBI
STOX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384183,798,022 - 184,023,530 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4183,797,692 - 184,023,526 (+)Ensemblhg38GRCh38
GRCh374184,719,175 - 184,944,683 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364185,063,503 - 185,175,869 (+)NCBIBuild 36Build 36hg18NCBI36
Celera4182,155,232 - 182,267,467 (+)NCBICelera
Cytogenetic Map4q35.1NCBI
HuRef4180,581,766 - 180,694,060 (+)NCBIHuRef
CHM1_14184,803,186 - 184,915,500 (+)NCBICHM1_1
T2T-CHM13v2.04187,141,451 - 187,367,423 (+)NCBIT2T-CHM13v2.0
Stox2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39847,633,083 - 47,866,943 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl847,633,083 - 47,899,397 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38847,180,048 - 47,413,847 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl847,180,048 - 47,446,362 (-)Ensemblmm10GRCm38
MGSCv37848,265,402 - 48,437,702 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36848,684,757 - 48,851,165 (-)NCBIMGSCv36mm8
Celera849,862,118 - 50,035,007 (-)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map826.61NCBI
Stox2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540324,878,118 - 24,980,659 (-)Ensembl
ChiLan1.0NW_00495540324,871,867 - 25,106,267 (-)NCBIChiLan1.0ChiLan1.0
STOX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23181,527,661 - 181,752,045 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14181,891,191 - 182,115,516 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04175,972,016 - 176,195,240 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14188,302,314 - 188,419,894 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4188,302,314 - 188,413,615 (+)EnsemblpanPan2panpan1.1
STOX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11646,422,717 - 46,679,516 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1646,428,213 - 46,637,959 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1646,915,811 - 47,022,753 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01648,639,591 - 48,746,602 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1648,645,464 - 48,855,885 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11646,603,983 - 46,710,865 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01647,218,381 - 47,325,614 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01647,352,483 - 47,459,432 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stox2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494332,739,339 - 32,962,936 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365545,154,706 - 5,370,884 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365545,148,453 - 5,256,514 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STOX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1545,084,139 - 45,298,762 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11545,083,803 - 45,301,161 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21551,804,940 - 51,915,186 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STOX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17129,874,225 - 129,991,804 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7129,875,664 - 129,985,547 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037110,126,560 - 110,244,491 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stox2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476914,518,344 - 14,779,307 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476914,517,544 - 14,785,700 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Stox2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11340,612,864 - 40,843,718 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stox2
969 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:103
Interacting mature miRNAs:107
Transcripts:ENSRNOT00000068562
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
631833Sach2Saccharin preference QTL 240.01consumption behavior trait (VT:0002069)calculated saccharin drink intake rate (CMO:0001613)164975766656898388Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)161590580260905802Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat

Markers in Region
D16Nkg25  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21644,983,501 - 44,983,663 (+)MAPPERmRatBN7.2
Rnor_6.01648,129,834 - 48,129,995NCBIRnor6.0
Rnor_5.01647,845,056 - 47,845,217UniSTSRnor5.0
RGSC_v3.41648,206,034 - 48,206,195UniSTSRGSC3.4
Celera1642,989,900 - 42,990,061UniSTS
Cytogenetic Map16q11UniSTS
RH143778  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21644,979,239 - 44,979,496 (+)MAPPERmRatBN7.2
Rnor_6.01648,125,572 - 48,125,828NCBIRnor6.0
Rnor_5.01647,840,794 - 47,841,050UniSTSRnor5.0
RGSC_v3.41648,201,772 - 48,202,028UniSTSRGSC3.4
Celera1642,985,638 - 42,985,894UniSTS
RH 3.4 Map16453.2UniSTS
Cytogenetic Map16q11UniSTS
BF406002  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21645,082,783 - 45,082,993 (+)MAPPERmRatBN7.2
Rnor_6.01648,229,138 - 48,229,347NCBIRnor6.0
Rnor_5.01647,942,626 - 47,942,835UniSTSRnor5.0
RGSC_v3.41648,305,879 - 48,306,088UniSTSRGSC3.4
Celera1643,089,214 - 43,089,423UniSTS
RH 3.4 Map16446.4UniSTS
Cytogenetic Map16q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 355 192 11 144 80 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF548355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000068562   ⟹   ENSRNOP00000063517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1651,707,212 - 51,815,209 (+)Ensembl
mRatBN7.2 Ensembl1644,974,531 - 45,082,537 (+)Ensembl
Rnor_6.0 Ensembl1648,120,864 - 48,228,891 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090839   ⟹   ENSRNOP00000071628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1651,708,632 - 51,815,209 (+)Ensembl
mRatBN7.2 Ensembl1645,049,572 - 45,082,537 (+)Ensembl
Rnor_6.0 Ensembl1648,121,430 - 48,222,285 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094426   ⟹   ENSRNOP00000078362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1651,707,212 - 51,813,627 (+)Ensembl
mRatBN7.2 Ensembl1644,974,531 - 45,085,105 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117134   ⟹   ENSRNOP00000082453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1651,580,798 - 51,815,209 (+)Ensembl
mRatBN7.2 Ensembl1644,848,078 - 45,085,105 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000128483   ⟹   ENSRNOP00000099583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1651,779,138 - 51,813,824 (+)Ensembl
RefSeq Acc Id: NM_001134863   ⟹   NP_001128335
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,707,212 - 51,815,209 (+)NCBI
mRatBN7.21644,974,531 - 45,082,537 (+)NCBI
Rnor_6.01648,120,864 - 48,228,891 (+)NCBI
Rnor_5.01647,711,628 - 47,942,908 (+)NCBI
RGSC_v3.41648,197,064 - 48,305,632 (+)RGD
Celera1642,980,930 - 43,088,967 (+)RGD
Sequence:
RefSeq Acc Id: XM_006253152   ⟹   XP_006253214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,782,024 - 51,819,909 (+)NCBI
mRatBN7.21645,049,364 - 45,087,238 (+)NCBI
Rnor_6.01648,195,504 - 48,233,588 (+)NCBI
Rnor_5.01647,711,628 - 47,942,908 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771258   ⟹   XP_008769480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,782,388 - 51,819,909 (+)NCBI
mRatBN7.21645,061,140 - 45,087,238 (+)NCBI
Rnor_6.01648,207,454 - 48,233,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600114   ⟹   XP_017455603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,580,855 - 51,819,909 (+)NCBI
mRatBN7.21644,848,182 - 45,087,238 (+)NCBI
Rnor_6.01647,994,556 - 48,233,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600116   ⟹   XP_017455605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,580,855 - 51,813,633 (+)NCBI
mRatBN7.21644,848,179 - 45,080,924 (+)NCBI
Rnor_6.01647,994,555 - 48,227,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600118   ⟹   XP_017455607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,708,756 - 51,819,909 (+)NCBI
mRatBN7.21644,976,076 - 45,087,238 (+)NCBI
Rnor_6.01648,122,295 - 48,233,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094520   ⟹   XP_038950448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,779,143 - 51,819,909 (+)NCBI
mRatBN7.21645,046,750 - 45,087,238 (+)NCBI
RefSeq Acc Id: XM_039094521   ⟹   XP_038950449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,779,148 - 51,819,909 (+)NCBI
mRatBN7.21645,045,903 - 45,087,238 (+)NCBI
RefSeq Acc Id: XM_039094522   ⟹   XP_038950450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,709,546 - 51,819,909 (+)NCBI
mRatBN7.21644,976,873 - 45,087,238 (+)NCBI
RefSeq Acc Id: NP_001128335   ⟸   NM_001134863
- UniProtKB: D4A001 (UniProtKB/TrEMBL),   A6JPL7 (UniProtKB/TrEMBL),   A0A8I6G2M9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253214   ⟸   XM_006253152
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K0Y3 (UniProtKB/TrEMBL),   A0A8I6G2M9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769480   ⟸   XM_008771258
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G2M9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455605   ⟸   XM_017600116
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZTK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455603   ⟸   XM_017600114
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017455607   ⟸   XM_017600118
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G2M9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071628   ⟸   ENSRNOT00000090839
Ensembl Acc Id: ENSRNOP00000063517   ⟸   ENSRNOT00000068562
RefSeq Acc Id: XP_038950450   ⟸   XM_039094522
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G2M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950449   ⟸   XM_039094521
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G2M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950448   ⟸   XM_039094520
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000082453   ⟸   ENSRNOT00000117134
Ensembl Acc Id: ENSRNOP00000078362   ⟸   ENSRNOT00000094426
Ensembl Acc Id: ENSRNOP00000099583   ⟸   ENSRNOT00000128483
Protein Domains
Winged helix Storkhead-box1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A001-F1-model_v2 AlphaFold D4A001 1-926 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708477 AgrOrtholog
BioCyc Gene G2FUF-11401 BioCyc
Ensembl Genes ENSRNOG00000009590 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068562 ENTREZGENE
  ENSRNOT00000068562.4 UniProtKB/TrEMBL
  ENSRNOT00000090839 ENTREZGENE
  ENSRNOT00000090839.3 UniProtKB/TrEMBL
  ENSRNOT00000094426.2 UniProtKB/TrEMBL
  ENSRNOT00000117134 ENTREZGENE
  ENSRNOT00000117134.2 UniProtKB/TrEMBL
  ENSRNOT00000128483 ENTREZGENE
  ENSRNOT00000128483.1 UniProtKB/TrEMBL
InterPro Storkhead-box_winged-helix UniProtKB/TrEMBL
  STOX1/2 UniProtKB/TrEMBL
KEGG Report rno:306459 UniProtKB/TrEMBL
NCBI Gene 306459 ENTREZGENE
PANTHER PTHR22437 UniProtKB/TrEMBL
  STORKHEAD-BOX PROTEIN 2 UniProtKB/TrEMBL
Pfam Stork_head UniProtKB/TrEMBL
PhenoGen Stox2 PhenoGen
RatGTEx ENSRNOG00000009590 RatGTEx
UniProt A0A0G2K0Y3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZTK2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G2M9 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LEP4_RAT UniProtKB/TrEMBL
  A6JPL7 ENTREZGENE, UniProtKB/TrEMBL
  D4A001 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-04-20 Stox2  storkhead box 2  LOC286760  spinelinin  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED