Ogfr (opioid growth factor receptor) - Rat Genome Database

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Gene: Ogfr (opioid growth factor receptor) Rattus norvegicus
Analyze
Symbol: Ogfr
Name: opioid growth factor receptor
RGD ID: 69324
Description: Predicted to enable opioid growth factor receptor activity. Predicted to be located in membrane; nucleus; and perinuclear region of cytoplasm. Orthologous to human OGFR (opioid growth factor receptor); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC124590; zeta-type opioid receptor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,080,743 - 188,087,028 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3188,080,042 - 188,087,471 (+)EnsemblGRCr8
mRatBN7.23167,703,173 - 167,709,459 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,702,695 - 167,709,473 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3172,083,259 - 172,089,685 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,042,350 - 181,048,776 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,704,098 - 177,710,383 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,093,662 - 176,099,949 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,930,505 - 176,099,987 (+)Ensemblrn6Rnor6.0
Rnor_5.03179,794,351 - 179,800,638 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43169,679,742 - 169,686,048 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3164,873,084 - 164,879,360 (-)NCBICelera
RGSC_v3.13169,585,777 - 169,592,086 (+)NCBI
Cytogenetic Map3q43NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bortezomib  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flutamide  (EXP)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
ivermectin  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
naltrexone  (ISO)
nitrates  (ISO)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone enanthate  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triadimefon  (EXP)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
6. Cloning, sequencing, expression and function of a cDNA encoding a receptor for the opioid growth factor, enkephalin. Zagon IS, etal., Brain Res 1999 Dec 4;849(1-2):147-54.
Additional References at PubMed
PMID:11890982   PMID:12477932   PMID:12650964   PMID:15121239   PMID:16641100   PMID:30931654   PMID:32640891  


Genomics

Comparative Map Data
Ogfr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,080,743 - 188,087,028 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3188,080,042 - 188,087,471 (+)EnsemblGRCr8
mRatBN7.23167,703,173 - 167,709,459 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,702,695 - 167,709,473 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3172,083,259 - 172,089,685 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,042,350 - 181,048,776 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,704,098 - 177,710,383 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,093,662 - 176,099,949 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,930,505 - 176,099,987 (+)Ensemblrn6Rnor6.0
Rnor_5.03179,794,351 - 179,800,638 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43169,679,742 - 169,686,048 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3164,873,084 - 164,879,360 (-)NCBICelera
RGSC_v3.13169,585,777 - 169,592,086 (+)NCBI
Cytogenetic Map3q43NCBI
OGFR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,804,835 - 62,814,000 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,804,178 - 62,814,000 (+)Ensemblhg38GRCh38
GRCh372061,436,187 - 61,445,352 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,906,622 - 60,915,797 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342060,906,621 - 60,915,796NCBI
Celera2058,111,807 - 58,120,974 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,154,256 - 58,163,417 (+)NCBIHuRef
CHM1_12061,337,230 - 61,346,422 (+)NCBICHM1_1
T2T-CHM13v2.02064,603,807 - 64,612,957 (+)NCBIT2T-CHM13v2.0
Ogfr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,231,200 - 180,237,630 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,231,038 - 180,237,629 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382180,589,407 - 180,595,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,589,245 - 180,595,836 (+)Ensemblmm10GRCm38
MGSCv372180,324,112 - 180,330,542 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362180,518,869 - 180,525,239 (+)NCBIMGSCv36mm8
Celera2184,675,271 - 184,681,670 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.13NCBI
Ogfr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,310,712 - 1,317,693 (-)Ensembl
ChiLan1.0NW_0049555281,310,394 - 1,316,748 (-)NCBIChiLan1.0ChiLan1.0
OGFR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,592,030 - 68,601,387 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,585,145 - 68,594,507 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,191,791 - 59,201,149 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,486,874 - 60,495,228 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2060,488,962 - 60,495,228 (+)EnsemblpanPan2panpan1.1
OGFR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,640,702 - 46,650,485 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,827,719 - 45,834,925 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02447,516,083 - 47,523,292 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,518,430 - 47,522,998 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,613,802 - 46,621,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,737,089 - 46,744,291 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,493,111 - 47,500,318 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ogfr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,857,040 - 194,864,410 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,313,454 - 10,317,730 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,308,041 - 10,318,053 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OGFR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,065,456 - 62,072,950 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11762,065,483 - 62,072,950 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
OGFR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121,414,947 - 1,423,789 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21,413,554 - 1,423,934 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605049,269,100 - 49,278,013 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ogfr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,579,488 - 28,587,994 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474128,576,876 - 28,588,315 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ogfr
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15157,690,618 - 157,696,834 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:320
Count of miRNA genes:179
Interacting mature miRNAs:207
Transcripts:ENSRNOT00000012611
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3181611379189428310Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat

Markers in Region
AI044795  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23167,708,162 - 167,708,346 (+)MAPPERmRatBN7.2
Rnor_6.03176,098,653 - 176,098,836NCBIRnor6.0
Rnor_5.03179,799,342 - 179,799,525UniSTSRnor5.0
RGSC_v3.43169,684,752 - 169,684,935UniSTSRGSC3.4
Celera3164,874,224 - 164,874,407UniSTS
RH 3.4 Map31526.8UniSTS
Cytogenetic Map3q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012611   ⟹   ENSRNOP00000012612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3188,080,718 - 188,087,026 (+)Ensembl
mRatBN7.2 Ensembl3167,703,163 - 167,709,457 (+)Ensembl
Rnor_6.0 Ensembl3175,930,505 - 176,099,949 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086541   ⟹   ENSRNOP00000073386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3188,080,042 - 188,087,028 (+)Ensembl
mRatBN7.2 Ensembl3167,702,695 - 167,709,459 (+)Ensembl
Rnor_6.0 Ensembl3176,093,640 - 176,099,987 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094884   ⟹   ENSRNOP00000094532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3188,080,399 - 188,087,471 (+)Ensembl
mRatBN7.2 Ensembl3167,702,862 - 167,709,473 (+)Ensembl
RefSeq Acc Id: NM_053340   ⟹   NP_445792
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83188,080,743 - 188,087,028 (+)NCBI
mRatBN7.23167,703,173 - 167,709,459 (+)NCBI
Rnor_6.03176,093,662 - 176,099,949 (+)NCBI
Rnor_5.03179,794,351 - 179,800,638 (+)NCBI
RGSC_v3.43169,679,742 - 169,686,048 (+)RGD
Celera3164,873,084 - 164,879,360 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_445792 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI01899 (Get FASTA)   NCBI Sequence Viewer  
  EDL88798 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073386
GenBank Protein Q9QXY4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445792   ⟸   NM_053340
- UniProtKB: Q9QXY4 (UniProtKB/Swiss-Prot),   Q3MID9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012612   ⟸   ENSRNOT00000012611
Ensembl Acc Id: ENSRNOP00000073386   ⟸   ENSRNOT00000086541
Ensembl Acc Id: ENSRNOP00000094532   ⟸   ENSRNOT00000094884
Protein Domains
Opioid growth factor receptor (OGFr) conserved

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QXY4-F1-model_v2 AlphaFold Q9QXY4 1-580 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692738
Promoter ID:EPDNEW_R3263
Type:multiple initiation site
Name:Ogfr_1
Description:opioid growth factor receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03176,093,652 - 176,093,712EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69324 AgrOrtholog
BioCyc Gene G2FUF-46327 BioCyc
Ensembl Genes ENSRNOG00000009355 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000086541 ENTREZGENE
IMAGE_CLONE IMAGE:7932932 IMAGE-MGC_LOAD
InterPro OGF_rcpt UniProtKB/Swiss-Prot
  OGFr UniProtKB/Swiss-Prot
MGC_CLONE MGC:124590 IMAGE-MGC_LOAD
NCBI Gene 83525 ENTREZGENE
PANTHER OPIOID GROWTH FACTOR RECEPTOR UniProtKB/Swiss-Prot
  PTHR14015 UniProtKB/Swiss-Prot
Pfam OGFr_N UniProtKB/Swiss-Prot
PhenoGen Ogfr PhenoGen
RatGTEx ENSRNOG00000009355 RatGTEx
TIGR TC218100
UniProt A0A0G2K5D6_RAT UniProtKB/TrEMBL
  A0A8I6AME6_RAT UniProtKB/TrEMBL
  A6KM90_RAT UniProtKB/TrEMBL
  F7EPP7_RAT UniProtKB/TrEMBL
  OGFR_RAT UniProtKB/Swiss-Prot
  Q3MID9 ENTREZGENE, UniProtKB/TrEMBL
  Q9QXY4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Ogfr  opioid growth factor receptor      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 580 amino acids 68820