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Gene: Sytl5 (synaptotagmin-like 5) Rattus norvegicus

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Symbol:

Sytl5

Name:

synaptotagmin-like 5

RGD ID:

631342

Description:

Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to be located in membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL5 (synaptotagmin like 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

synaptotagmin 15; synaptotagmin-like protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYTL5 (synaptotagmin like 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Sytl5 (synaptotagmin-like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sytl5 (synaptotagmin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SYTL5 (synaptotagmin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYTL5 (synaptotagmin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sytl5 (synaptotagmin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYTL5 (synaptotagmin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SYTL5 (synaptotagmin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sytl5 (synaptotagmin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sytl5 (synaptotagmin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SYTL5 (synaptotagmin like 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sytl5 (synaptotagmin-like 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sytl5 (synaptotagmin-like 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	btsz	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	btsz	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	sytl5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	15,461,215 - 15,702,660 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	15,460,472 - 15,550,471 (-)	Ensembl				GRCr8
mRatBN7.2	X	12,775,529 - 13,030,134 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	12,788,698 - 13,030,175 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	12,980,058 - 13,068,810 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	16,476,998 - 16,565,752 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	12,733,565 - 12,822,327 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	13,857,669 - 14,109,592 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	14,019,961 - 14,109,568 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	14,642,886 - 14,891,896 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	24,945,436 - 25,034,025 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	13,398,414 - 13,486,944 (-)	NCBI		Celera
RGSC_v3.1	X	25,059,892 - 25,087,494 (-)	NCBI
Cytogenetic Map	X	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Laterality Defects, Autosomal Dominant (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

buta-1,3-diene (ISO)

cadmium atom (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

CGP 52608 (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dorsomorphin (ISO)

Enterolactone (ISO)

ethanol (ISO)

glyphosate (EXP)

ivermectin (ISO)

Licochalcone B (ISO)

lipopolysaccharide (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

Muraglitazar (EXP)

O-methyleugenol (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (ISO)

paraquat (EXP)

PCB138 (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

phytoestrogen (ISO)

progesterone (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

titanium dioxide (EXP)

trichostatin A (ISO)

triptonide (ISO)

troglitazone (EXP)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

exocytosis (IBA,ISO)

intracellular protein transport (IEA)

Cellular Component

exocytic vesicle (IBA)

membrane (IEA)

plasma membrane (IBA)

Molecular Function

metal ion binding (IEA)

neurexin family protein binding (IBA)

phospholipid binding (IEA)

protein binding (ISO)

small GTPase binding (IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Synaptotagmin-like protein 5: a novel Rab27A effector with C-terminal tandem C2 domains.	Kuroda TS, etal., Biochem Biophys Res Commun 2002 May 10;293(3):899-906.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12590134

Genomics

Comparative Map Data

Sytl5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	15,461,215 - 15,702,660 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	15,460,472 - 15,550,471 (-)	Ensembl				GRCr8
mRatBN7.2	X	12,775,529 - 13,030,134 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	12,788,698 - 13,030,175 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	12,980,058 - 13,068,810 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	16,476,998 - 16,565,752 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	12,733,565 - 12,822,327 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	13,857,669 - 14,109,592 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	14,019,961 - 14,109,568 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	14,642,886 - 14,891,896 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	24,945,436 - 25,034,025 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	13,398,414 - 13,486,944 (-)	NCBI		Celera
RGSC_v3.1	X	25,059,892 - 25,087,494 (-)	NCBI
Cytogenetic Map	X	q12	NCBI

SYTL5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	37,888,915 - 38,128,820 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	38,006,515 - 38,128,819 (+)	Ensembl			hg38	GRCh38
GRCh37	X	37,865,806 - 37,988,073 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	37,778,087 - 37,870,927 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	37,649,359 - 37,742,200	NCBI
Celera	X	42,003,495 - 42,125,714 (+)	NCBI		Celera
Cytogenetic Map	X	p11.4	NCBI
HuRef	X	35,611,538 - 35,733,083 (+)	NCBI		HuRef
CHM1_1	X	37,896,717 - 38,019,127 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	37,292,501 - 37,532,417 (+)	NCBI		T2T-CHM13v2.0

Sytl5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	9,613,851 - 9,871,268 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	9,751,861 - 9,860,782 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm39 Ensembl	X	9,613,900 - 9,749,738 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	9,747,622 - 9,998,864 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	9,885,622 - 9,994,543 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	9,462,748 - 9,571,669 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	9,042,581 - 9,151,502 (+)	NCBI		MGSCv36	mm8
Celera	X	7,598,989 - 7,706,928 (+)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	4.62	NCBI

Sytl5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955601	76,647 - 210,208 (+)	Ensembl
ChiLan1.0	NW_004955601	76,647 - 210,198 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYTL5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	39,553,788 - 39,776,560 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	39,557,169 - 39,779,938 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	30,355,289 - 30,578,052 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	38,164,569 - 38,286,366 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	38,164,308 - 38,288,628 (+)	Ensembl			panPan2	panpan1.1

SYTL5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	32,652,389 - 32,886,793 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	32,651,968 - 32,879,525 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	20,001,349 - 20,232,716 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	32,699,069 - 32,931,470 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	32,698,624 - 32,930,845 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	32,780,480 - 33,012,485 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	32,744,381 - 32,984,277 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	32,904,116 - 33,023,381 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sytl5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	24,909,573 - 25,149,712 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936502	4,750,233 - 4,987,887 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936502	4,873,750 - 4,987,742 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYTL5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	33,798,291 - 34,036,242 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	33,798,296 - 34,066,127 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	37,773,056 - 37,854,459 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYTL5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666133	335,476 - 392,265 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sytl5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624762	17,400,875 - 17,547,947 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624762	17,401,304 - 17,659,757 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sytl5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	11,290,937 - 11,384,520 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sytl5
958 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	45
Count of miRNA genes:	40
Interacting mature miRNAs:	45
Transcripts:	ENSRNOT00000004785
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	8111486	53111486	Rat
634325	Bw13	Body weight QTL 13	0		body mass (VT:0001259)	body weight (CMO:0000012)	X	4001493	24470521	Rat

Markers in Region

ha2932

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	88,206,089 - 88,206,554 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	94,919,050 - 94,919,514	NCBI	Rnor6.0
Rnor_5.0	X	94,807,178 - 94,807,642	UniSTS	Rnor5.0
Celera	X	13,417,319 - 13,418,573	UniSTS
Celera	X	89,371,262 - 89,371,726	UniSTS
Cytogenetic Map	X	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	8	53	139	79	78	47	44	47	6	275	124	8	114	80	92	31	11	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001434004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_178333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB098162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC133223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC133696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004785 ⟹ ENSRNOP00000004785

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	15,460,842 - 15,550,471 (-)	Ensembl
mRatBN7.2 Ensembl	X	12,788,698 - 12,957,923 (-)	Ensembl
Rnor_6.0 Ensembl	X	14,019,961 - 14,109,568 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113935 ⟹ ENSRNOP00000089213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	15,460,851 - 15,550,179 (-)	Ensembl
mRatBN7.2 Ensembl	X	12,788,698 - 13,030,175 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114439 ⟹ ENSRNOP00000094316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	15,460,472 - 15,550,471 (-)	Ensembl
mRatBN7.2 Ensembl	X	12,788,698 - 13,030,175 (-)	Ensembl

RefSeq Acc Id:

NM_178333 ⟹ NP_848016

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	15,461,473 - 15,550,272 (-)	NCBI
mRatBN7.2	X	12,788,959 - 12,877,756 (-)	NCBI
Rnor_6.0	X	14,020,157 - 14,108,951 (+)	NCBI
Rnor_5.0	X	14,642,886 - 14,891,896 (+)	NCBI
RGSC_v3.4	X	24,945,436 - 25,034,025 (-)	RGD
Celera	X	13,398,414 - 13,486,944 (-)	RGD

Sequence:

show sequence

ATGTCTAAGAACTCGGAGTTCATCAATCTGTCATTTTTATTGGATCATGAGAAGGAAATGATCC
TCGGAGTCCTAAAGAGAGATGAATATTTGAAAAAGGTGGAAGACAAGAGGATAAGGAAGCTGAA
AAATGAGCTTTTAGAAGCCAAGCGTAGGAGTGGGAAGACTCACCAAGAGGCGAATAGAGTCTGT
GTTCACTGTCAGAAAAGCCTGGGCCTCATCTTTGACCGGGGAGCTCCATGCCAAGCCTGTTCAC
TCAGAGTGTGCAGTGAGTGTCGAGTCACGGGACTTGATGGCAGCTGGAAGTGCACTGTCTGTGC
TAAAGTCGCGCAGCTAAGGATCATAAGTGGAGAATGGTTCTTGGAAGAAAAGGCAAAGCGTTTC
AAACAAGTCAATGTTCTGGGCACTGATGTTGTTCGACAGTCCATCTTAAGAAGAAGTCCAGGGT
CTGAAGAAATACAAAACCAAGAGCAAGCACACCAAGGTGCAGACAAGTCAGATACTTTGTCTTC
AGTCAGGCAGAAGGCCACTCATGATGGACCAAAGAGGAAGGGTTTTCTTCTTAGCAAGTTCAGA
TCAGCAACCAGAGGAGAAATCAAAACTCCAAAAGCTGAAAGTGGAAGGAGCTATAGCTTGGACC
TAGACAATCAAAATCTTCAGAGTTTCAAGTCGGTCTCTGGCTCAGACAGGGGAAGTACCACTTC
ATCAGATCTCACTGACCAGGAGGCTGGACGAGGAGCACCAAAAGGCAGCTGCAGCAATGGTGGA
ATCCCGGTTACTCAGAGGTCACCAGCCCCAAGTGCTCGTAGTGTGACCTCCATCAGCAGCAGAG
AACATGGTTTTGAAAATTCCATGGCTTTGGCTACCATTGAAAGCATCTCTGAGGAACTCACAAA
GAGTCATCGCAGGAACACGTCTGGTACACCTTCCATAGCAGTGTCTGGTACCTCGCTGTCCTCA
GAGCGGAGTCGATCTGAGTTAGATTTGAGTGAGTCATTTGCAGAAGACTTAGAGGACACTTCAA
GCATAAGAAGCAGATCTGTTCCTGGGGCTTTAGACAAAGACTTGAATTCCTTAGAAGACACAGA
AGATGGTGTGGACTTAGTGTCCTCCAGGTTTTCTGCAAATACCCACAGTCTGGCAAGTGGCCTG
TCAACTAGCTCCCAAGCAGGATCTGATAGGAAGAGGAGCTACCTACATGTGCCTGATGCTGACT
CAGACACTACTAGCCTTAACAGCATGATGAGTGTTTACAGTGAAACGGGAGACTATGGCAATGT
GAAAGTCACCGGTGAGATTCTTCTCCACATCAGCTACTGCTACAAAACTGGCGGGCTATACATT
TTTGTCAAGAACTGCAGAAACCTGGCCATCGGAGATGAAAAGAAACAGAGGACAGATGCTTATG
TCAAGTCATACCTTCTTCCAGACAAGACCCGAAACAATAAGCGAAAGACCAAAATCAGGACAGG
TACCAATCCAGAATTCAATGAAACATTAAAGTATACTATCAGCCACACCCAGCTGGAAACAAGA
ACTCTGCAGCTCTCAGTCTGGCACTACGATCGGTTTGGACGCAACAGTTTCCTGGGAGAGGTGG
AGATTGCTTTTGACTCATGGAACTTCGAAAATCCATGTGATGAATGGTTTGTGCTTCAGCCCAA
GGTGGAGTTGGCTCCTGATATTAGCCTTCAATATAAAGGAGAGCTAACCATTGTTTTGCGTTAT
ATTCCTCCAGAGGAGAACCTTATATTTCCAGTAGAACAACCTCAAGGAAAGAAGATCTTTAAAA
AGGGAAAGAAGAAAGAGTCACCTGCCATTTCTGGGGGAATACTTGAAGTTTTCATCAAAGAAGC
AAAGAATCTGACAGCAGTAAAAGCAGGGGGCACTTCTGACAGCTTCGTCAAGGGCTACCTGCTT
CCTGATGATAACAAAGCCACCAAGCACAAAACTGCAGTTGTAAAAAAGAGTGTCAATCCTCAGT
GGAACCATGTGTTCATATTCAGCGGTCTGTATCCTCAGGATATACAGAATGCTTGCCTAGAACT
CACCATCTGGGATAAGGAGGCCTTTTCCAGCAACATCTTTCTAGGAGGTGTTCGTTTAAATTCC
GGAAGCGGTATTAGCCATGGGAAGGCTGTGGACTGGATGGACTCTCGTGGGGAAGAACAACGCC
TTTGGCAAAAGATGGCTGACAACCCTGGGACATCTGTAGAAGGAGTTCTCATGCTACGTTCTAG
CATGGCGAAATGTAGGCTCTGA

hide sequence

RefSeq Acc Id:

XM_008773070 ⟹ XP_008771292

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	15,461,215 - 15,630,091 (-)	NCBI
mRatBN7.2	X	12,775,529 - 12,957,585 (-)	NCBI
Rnor_6.0	X	13,857,669 - 14,109,592 (+)	NCBI

Sequence:

show sequence

TGTGAGGGGTTGGTTGGTCCTGAAGGCCTCAGCAATGAGAGTCCAGAAGCCATGTGGAAGGTAT
GTAGGGTTCGCATAGAGAGTCCGAGAGATGAGGGAGCCCGGCGACAGGCTCAGCGGGCAGGCCG
GTGTTCGTGTGCCCCAGCAAGCTGTGTCGAGCTTGACTGTGGCGCCGCCGCCTGGTAAAGCCTG
GCACTGAGCCTGTGGGTAGGGGCGGCAGGAGACCGCCTCCCCCGTGGTCCCTCTACCTGATAGG
GGCGGGGAGGAAGAAAGGCGGGCTCCAAGCGAGTGGGTGAGTCACTCCTGTCCCTTGGGTTAGG
AGCGTCAGGACTTCTCTCCTTTCCCAGGGTCTGCGCATCGGCTCCAGCTCCCCGACTCCCTCTG
CTACTCTGCTGGGCGACGCGACTCCCATCTGAGGCTGCACCAGTCTCCTTTCCTCATAGGTGAG
GACTAGATCAGCATATTCTTGATACATTTAGTGCAGAAGTCTCAACTCACTTCAAATTCAGACT
TTATTTTTCGTCTTCTCTGTTATATATGTCTCAACAGCTGGGCCTGGTGGTGTAAGCAGAACCA
AGAGGATTGATCAAAATTCAAGCCTCTGCGGCATGGTGAATCAACAGCCTGGCAGTGAGGAATT
GGCCCGTTAAACACTCTTTCTTCTTCCCACGAGCACATCAACAGGTACAGATCAGCCGTGAAGA
TATCTGGGGGGACACTTGCTGAGCACGTTAAATCTAGTGATTTCACTAACACAGACAGAAAGGG
ATATCATGATTGGCATGTACATGATACATATTTTCTTTATTGTTTCTTTCAAATATTTTTCACC
ACAATGGAATGCTATAATGCTGTCTGGGGGATACATGGACTAAGACAATATTCCTGTACAAATG
ATTGAGAAGTAAGAAGAGCATATATGACCCATCTGCACATTTTAAACTTTATTTTCACAGCAGT
GAACTATCTGAGCTTCATAAGTTATATACTTTACTGCATTTGATGAAGTCAGAGAGGCCCGGAT
TCACAATGACAATTCCCTAAGTACCAGGCATCTGTGTGTAAGTTGTGCATCTCTGAGGTTGCCT
ATGTCTCCTGCATAGAGAAGCTGCTTTGATGAGGCGTGAGATCTCTACTCATCTGAGTTGGTGG
CTGTGGGTGTGTGTCCAAGTGACTCACAAATGTTTACTGCTACTGTTTGAGGAGGTTCCCTCCC
AGACTTTGAAGAAATAATGCCATCTGATCTCCTGAAGAACTAAGAGACATAGCAAAATAGCTAC
CCTGCTTTGGGATAGAATATGAGTATCCACTGGTGACGACTGGACAAGACACTTCCTATTGGGT
CTGGTGAAAACAAGCACCCTCTGGTGGTTCAGATGCTAGCCAGCATGAAGGAAGTTTCCAGCTC
AGTGCCAGCCTGCTTTCTTACAGCCGAGGTTAACTGATGTGGGAGGACCTACTTTAGAAGTAAG
CAGTGCCATTCCCTGGGTTTGAGTCCTAAACTATACAAAAAGGAGAAAGCTTGCTGAACACTGC
TTCCGGACTACGAACACAATGTGACCAGCTGCTTCCAGCTCCTGCTGCCTTGACTTTTCTGCAC
AATGATGGACTGTGTCTCCAAACTGTGAGCCAAAATGAAACCTTTCCTTCTTTACTTTTGTGAC
TGTGCACGCAAACCCCTTCTTCCTTGCTTCTGTCAGGGTATTTTATCATTGGAAAAGAAAAACG
TAACTGAGACACTGTACTAAATAGAAATACTTATTCTCACATTCTAGAACACCATTTTGAGGTA
GTTACTGTCATGAACTTTAGTTTTTACAGATGAGGAACGAAATGGAAGATTAACTAACAGTTCA
AAGTCATACATGATTGATGACAGAGAAAATGCAGGCCAAGACTACCTAGGGAGAGCGTCAGCCA
CTGTTGGCTCAGCCTTCCTGCATCAACTAACAATCAAGAAAATTCTACACAGATAAAGGAGTTT
CTGGCAGTACAGACGATGGAGATCACATCCTTCCATGTGCTAGGCAAGTTCTTCAACACTCATT
CACGCCCTTGCCCCTGCTTAAAACAGTCTCTGTCACTTTTAGAGGGTTCTCACTTTAACAATAG
TCCATTACTCACAGTTAAAATATTAAGCCCAGCATCCTAGGCAAGTCAAATATTATTCTATTTT
GTTTCTCATATACTAATATTCATCCTTTTCAAGGTGTGTTTTAGTGAAACCTGCTGTTTTCACC
CACTTTGCAGTGACTAACTGGAGAACGACCTCTGTCTGACTGCTCTGGTAGATGGTAGACTCAT
GATGGCACATCAACTTGGTGGGAAAAGAACATTTTGAGATTGAGTATCTCCAGTGGAAAAGTTC
TGCCATGCTAAGCTGTGTCAAGCTGGCAGCTCAAGCTAATGAGGACTACCACCACTGCTTTCAG
GAGTGAACTGTTGCAAAATGGGGAGTTATGCTGGTGCTGCAGCTTGAAGCCAGGGCCTCACACA
CGATAGGCAAGCGCTTTACCAAAGATCTACAGTCCTCAGTTGCAGGATCTTCAGTAAGTTTCCA
TCTTACTAAACTATCATCACAGTGCAGTCCTGCCTTCTGGAGGAAATATCCTGACTTTCTCCAT
AAAGTTCGGACTACTTATGATCTTTTTGGTCATCATTTATATGCCAACCCAGCTTAAAACCAGA
TAAGATCCACAAGGATGGAAAAGCAAGTTGTGTATTCTATTTATGGAGACAGCAGCTGACACTG
CATTTCCTACATTGCGGGCCCCAGAGGAACTGAGTCCTGTTCTGAAGCTTTTTGAGAGCTCAAA
GTTCAGCATCATTAGTGAATTTTAGTGGCTGGCTGTCTACACAGCAAAGGCTTTAGAGAAATTT
TTCAGTTCAAACAGTAATGATTTTCATGGACTACAATTTCAGTAGAACATGTTTTCTCTGTAAT
GTGAAAGAATATCGAGCACTTGTCAGCAAATCTGTAGAGACCTTGAAAGAAAACCCTTTAAATT
GAATAGCTTGAACACTAGGCTGACCAGGGGAATCTTAACAACAGTAAATATCCATTCGCCTTCT
GGAAGATTCCACCACTGCTATACAGAGCTGCTGCTGAAATACCATGTCGAAGAACTCAGAGTTC
ATCAATCTGTCATTTTTATTGGATCATGAGAAGGAAATGATCCTCGGAGTCCTAAAGAGAGATG
AATATTTGAAAAAGGTGGAAGACAAGAGGATAAGGAAGCTGAAAAATGAGCTTTTAGAAGCCAA
GCGTAGGAGTGGGAAGACTCACCAAGAGGCGAATAGAGTCTGTGTTCACTGTCAGAAAAGCCTG
GGCCTCATCTTTGACCGGGGAGATCCATGCCAAGCCTGTTCACTCAGAGTGTGCAGTGAGTGTC
GAGTCACGGGACTTGATGGCAGCTGGAAGTGCACTGTCTGTGCTAAAGTCGCGCAGCTAAGGAT
CATAAGTGGAGAATGGTTCTTGGAAGAAAAGGCAAAGCGTTTCAAACAAGTCAATGTTCTGGGC
ACTGATGTTGTTCGACAGTCCATCTTAAGAAGAAGTCCAGAAATACAAAACCAAGAGCAAGCAC
ACCAAGGTGCAGACAAGTCAGATACTTTGTCTTCAGTCAGGCAGAAGGCCACTCATGATGGACC
AAAGAGGAAGGGTTTTCTTCTTAGCAAGTTCAGATCAGCAACCAGAGGAGAAATCAAAACTCCA
AAAGCTGAAAGTGGAAGGAGCTATAGCTTGGACCTAGACAATCAAAATCTTCAGAGTTTCAAGT
CGGTCTCTGGCTCAGACAGGGGAAGTACCACTTCATCAGATCTCATTGACCAGGAGGCTGGACG
AGGAGCACCAAAAGGCAGCTGCAGCAATGGTGGAATCCCAGTTACTCAGAGGTCACCAGCCCCA
AGTGCTCGTAGTGTGACCTCCATCAGCAGCAGAGAACATGGTTTTGAAAATTCCATGGCTTTGG
CTACCATTGAAAGCATCTCTGAGGAACTCACAAAGAGTCATCGCAGGAACACGTCTGGTACACC
TTCCATAGCAGTGTCTGGTACCTCGCTGTCCTCAGAGCGGAGTCGATCTGAGTTAGATTTGAGT
GAGTCATTTGCAGAAGACTTAGAGGACACTTCAAGCATAAGAAGCAGATCTGTTCCTGGGGCTT
TAGACAAAGACTTGAATTCCTTAGAAGACACAGAAGATGGTGTGGACTTAGTGTCCTCCAGGTT
TTCTGCAAATACCCACAGTCTGGCAAGTGGCCTGTCAACTAGCTCCCAAGCAGGATCTGATAGG
AAGAGGAGCTACCTACATGTGCCTGATGCTGACTCAGACACTACTAGCCTTAACAGCATGATGA
GTGTTTACAGTGAAACGGGAGACTATGGCAATGTGAAAGTCACCGGTGAGATTCTTCTCCACAT
CAGCTACTGCTACAAAACTGGCGGGCTATACATTTTTGTCAAGAACTGCAGAAACCTGGCCATC
GGAGATGAAAAGAAACAGAGGACAGATGCTTATGTCAAGTCATACCTTCTTCCAGACAAGACCC
GAAACAATAAGCGAAAGACCAAAATCAGGACAGGTACCAATCCAGAATTCAATGAAACATTAAA
GTATACTATCAGCCACACCCAGCTGGAAACAAGAACTCTGCAGCTCTCAGTCTGGCACTACGAT
CGGTTTGGACGCAACAGTTTCCTTGGAGAGGTGGAGATTGCTTTTGACTCATGGAACTTCGAAA
ATCCATGTGATGAATGGTTTGTGCTTCAGCCCAAGGTGGAGTTGGCTCCTGATATTAGCCTTCA
ATATAAAGGAGAGCTAACCATTGTTTTGCGTTATATTCCTCCAGAGGAGAACCTTATATTTCCA
GTAGAACAACCTCAAGGAAAGAAGATCTTTAAAAAGGGAAAGAAGAAAGAGTCACCTGCCATTT
CTGGGGGAATACTTGAAGTTTTCATCAAAGAAGCAAAGAATCTGACAGCAGTAAAAGCAGGGGG
CACTTCTGACAGCTTCGTCAAGGGCTACCTGCTTCCTGATGATAACAAAGCCACCAAGCACAAA
ACTGCAGTTGTAAAAAAGAGTGTCAATCCTCAGTGGAACCATGTGTTCATATTCAGCGGTCTGT
ATCCTCAGGATATACAGAATGCTTGCCTAGAACTCACCATCTGGGATAAGGAGGCCTTTTCCAG
CAACATCTTTCTAGGAGGTGTTCGTTTAAATTCCGGAAGCGGTATTAGCCATGGGAAGGCTGTG
GACTGGATGGACTCTCGTGGGGAAGAACAACGCCTTTGGCAAAAGATGGCTGACAACCCTGGGA
CATCTGTAGAAGGAGTTCTCATGCTACGTTCTAGCATGGCAAAATGTAGGCTCTGAGGGCACCA
GTTCTCCCAAAAATACATCTCTGGTTGCCAGCTGTTTCCTCTCAGTGAAAAGACTGGGGCTTTG
AAATCACTGAAGAGTATTAGGGCATAATAGGAAACATGTCAGTACTGTGAACATTTAGGATATT
GCTGATTGTCAAAAAACAAAACAAAAGTAAAAACCCATATCCTTTTATGTGTTCACTTACTCGG
GTCTCCCTTATTAGACAATAGGAAGTGTACCTTTCCAACAATAAAACTGTGCAAAGGCTCATAG
GCTTTATGTTGATAAAAATGTTATGAGCTTATTGGAGAATACTGTTTAGATAGGGGGTTCCCAT
TCTTTTCCCAACTGAGTTACTTAAGGTTTGTTGAGTCTGAGAAGAGAAGGGAACATGAAGGAGG
TAGATTGCTTGAAGAATAACAAAAAAAGATACTGGCCTCTTTTTCTTATATTTATTGTGGGATG
GCCTGGGGATTGTTTGGAGGACAGGGTAGACTGCTGTTATAGTGGCAAACTTCGGGATGAAGAT
GGTAATGTTTCAGGTTGTACTGGTGGGACTTTGGTAATTACAGAATTTATCATAAACTCCAGCC
TCCTTTTCAAGGTAAAGATAACTAAATGATTATGTGTGATCTCTCTCTCTCTCTCTC

hide sequence

RefSeq Acc Id:

XM_017601991 ⟹ XP_017457480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	15,461,215 - 15,630,091 (-)	NCBI
mRatBN7.2	X	12,775,529 - 12,957,585 (-)	NCBI
Rnor_6.0	X	13,938,796 - 14,109,592 (+)	NCBI

Sequence:

show sequence

ACAAGCCAGTCTGGTCTAGGCAATTCCTTAATCAAGGCTTTTCCTTCATAAAGACTCTAGGATA
TGACAAACTGATAATTAAAGATACCTAGGACAGGTGTCTTCCTTGATCAGTCTTAACCTTTCTT
TTGAAGATAGTGTCTCTCCAGTGCTGGAGTTACAGACATGCCTATCATTTTACATGGGTGTTCA
GTATCCAAACTGATGCTTGAATATCAAGCCATTTTCCTCCTCCCTATTTATAGTAGATGCCTTT
TCTTAATACCAAAGAATAGCATAGAACAGTGGTCCTCAAGTACTTTAGCCCCAGGCTTCCCCAG
GTTATTTTGAACAGTGAGGAACTGTTGTTTTGGTTGACTCAATCTCTTGGCATGTATAATACTA
GAATTAATAGTGTACCGAGCAATGTAGCACATGCCTATAATCCCAGCACTCCAGAAGTAGATGC
AGAAAGATTGATTGATGCAAGTTCAAATTCAGCCTGGTCTACACAGTGAGTTCATACCCAGCAA
AACTTAATAGTAAGAGATTGTCTGAAACAACAACTAAAAAAATGTTGTTGTAAGCATAAGAATA
TAAAAAGATGTGTTCCATAGGCTGCCAGAAAAGAGTAGTGGCCTCATTACAGAGTCATATAGCA
TAATATATTCCACTGGATATGGCAAATGAAAAGGAAATGAGAACCTTGGCACTAGGAAAGAAAT
TTTGACTTCAGGAAGCCATGAACCACTATCAGAGATCTCTAAATATTCTCAAATGATGTTTCAA
GAACAATTTGTGGGATAATGTTGTCGCTCAGTAGTAGAGTGCTTGCCTTGAACACAGGAGTCCC
AGTAGTCCACCCCTAACAACAAATAAATACATGATTAAATAAGTAAAGCCATTGTTGTATATTT
AATTTATTTATGGATAAAAGCAAATTAGCACTTGTATACTCTATCACCATCTGTCTCCTTTCTC
AATGATGCGAGCAAGACTTGCTCAAATAATATTGTAAAATCATGCTATTTATCCATTCTCTCTT
TCTAATAAAAAGAATTTCTTTAAATGCCTTATAACAACTGGAAGACTAATTTGAAAAGGAGGAG
CACCTTGCAGGATGACTCAAATAATATATCCTAAATTTTAGAAACTTTAATTGTAATATATTTC
ATGTAGTTATGTCCTACTATATAAGAGAAATGTCTCTGGCTCATGTATGTATTTTCAAGTCATG
TATGTGAATGCCCTTCTATTTCTGATTGGAACCCTTCCTCCTATAGATAAAGGAGTTTCTGGCA
GTACAGACGATGGAGATCACATCCTTCCATGTGCTAGGCAAGTTCTTCAACACTCATTCACGCC
CTTGCCCCTGCTTAAAACAGTCTCTGTCACTTTTAGAGGGTTCTCACTTTAACAATAGTCCATT
ACTCACAGTTAAAATATTAAGCCCAGCATCCTAGGCAAGTCAAATATTATTCTATTTTGTTTCT
CATATACTAATATTCATCCTTTTCAAGGTGTGTTTTAGTGAAACCTGCTGTTTTCACCCACTTT
GCAGTGACTAACTGGAGAACGACCTCTGTCTGACTGCTCTGGTAGATGGTAGACTCATGATGGC
ACATCAACTTGGTGGGAAAAGAACATTTTGAGATTGAGTATCTCCAGTGGAAAAGTTCTGCCAT
GCTAAGCTGTGTCAAGCTGGCAGCTCAAGCTAATGAGGACTACCACCACTGCTTTCAGGAGTGA
ACTGTTGCAAAATGGGGAGTTATGCTGGTGCTGCAGCTTGAAGCCAGGGCCTCACACACGATAG
GCAAGCGCTTTACCAAAGATCTACAGTCCTCAGTTGCAGGATCTTCAGTAAGTTTCCATCTTAC
TAAACTATCATCACAGTGCAGTCCTGCCTTCTGGAGGAAATATCCTGACTTTCTCCATAAAGTT
CGGACTACTTATGATCTTTTTGGTCATCATTTATATGCCAACCCAGCTTAAAACCAGATAAGAT
CCACAAGGATGGAAAAGCAAGTTGTGTATTCTATTTATGGAGACAGCAGCTGACACTGCATTTC
CTACATTGCGGGCCCCAGAGGAACTGAGTCCTGTTCTGAAGCTTTTTGAGAGCTCAAAGTTCAG
CATCATTAGTGAATTTTAGTGGCTGGCTGTCTACACAGCAAAGGCTTTAGAGAAATTTTTCAGT
TCAAACAGTAATGATTTTCATGGACTACAATTTCAGTAGAACATGTTTTCTCTGTAATGTGAAA
GAATATCGAGCACTTGTCAGCAAATCTGTAGAGACCTTGAAAGAAAACCCTTTAAATTGAATAG
CTTGAACACTAGGCTGACCAGGGGAATCTTAACAACAGTAAATATCCATTCGCCTTCTGGAAGA
TTCCACCACTGCTATACAGAGCTGCTGCTGAAATACCATGTCGAAGAACTCAGAGTTCATCAAT
CTGTCATTTTTATTGGATCATGAGAAGGAAATGATCCTCGGAGTCCTAAAGAGAGATGAATATT
TGAAAAAGGTGGAAGACAAGAGGATAAGGAAGCTGAAAAATGAGCTTTTAGAAGCCAAGCGTAG
GAGTGGGAAGACTCACCAAGAGGCGAATAGAGTCTGTGTTCACTGTCAGAAAAGCCTGGGCCTC
ATCTTTGACCGGGGAGATCCATGCCAAGCCTGTTCACTCAGAGTGTGCAGTGAGTGTCGAGTCA
CGGGACTTGATGGCAGCTGGAAGTGCACTGTCTGTGCTAAAGTCGCGCAGCTAAGGATCATAAG
TGGAGAATGGTTCTTGGAAGAAAAGGCAAAGCGTTTCAAACAAGTCAATGTTCTGGGCACTGAT
GTTGTTCGACAGTCCATCTTAAGAAGAAGTCCAGGGTCTGAAGAAATACAAAACCAAGAGCAAG
CACACCAAGGTGCAGACAAGTCAGATACTTTGTCTTCAGTCAGGCAGAAGGCCACTCATGATGG
ACCAAAGAGGAAGGGTTTTCTTCTTAGCAAGTTCAGATCAGCAACCAGAGGAGAAATCAAAACT
CCAAAAGCTGAAAGTGGAAGGAGCTATAGCTTGGACCTAGACAATCAAAATCTTCAGAGTTTCA
AGTCGGTCTCTGGCTCAGACAGGGGAAGTACCACTTCATCAGATCTCATTGACCAGGAGGCTGG
ACGAGGAGCACCAAAAGGCAGCTGCAGCAATGGTGGAATCCCAGTTACTCAGAGGTCACCAGCC
CCAAGTGCTCGTAGTGTGACCTCCATCAGCAGCAGAGAACATGGTTTTGAAAATTCCATGGCTT
TGGCTACCATTGAAAGCATCTCTGAGGAACTCACAAAGAGTCATCGCAGGAACACGTCTGGTAC
ACCTTCCATAGCAGTGTCTGGTACCTCGCTGTCCTCAGAGCGGAGTCGATCTGAGTTAGATTTG
AGTGAGTCATTTGCAGAAGACTTAGAGGACACTTCAAGCATAAGAAGCAGATCTGTTCCTGGGG
CTTTAGACAAAGACTTGAATTCCTTAGAAGACACAGAAGATGGTGTGGACTTAGTGTCCTCCAG
GTTTTCTGCAAATACCCACAGTCTGGCAAGTGGCCTGTCAACTAGCTCCCAAGCAGGATCTGAT
AGGAAGAGGAGCTACCTACATGTGCCTGATGCTGACTCAGACACTACTAGCCTTAACAGCATGA
TGAGTGTTTACAGTGAAACGGGAGACTATGGCAATGTGAAAGTCACCGGTGAGATTCTTCTCCA
CATCAGCTACTGCTACAAAACTGGCGGGCTATACATTTTTGTCAAGAACTGCAGAAACCTGGCC
ATCGGAGATGAAAAGAAACAGAGGACAGATGCTTATGTCAAGTCATACCTTCTTCCAGACAAGA
CCCGAAACAATAAGCGAAAGACCAAAATCAGGACAGGTACCAATCCAGAATTCAATGAAACATT
AAAGTATACTATCAGCCACACCCAGCTGGAAACAAGAACTCTGCAGCTCTCAGTCTGGCACTAC
GATCGGTTTGGACGCAACAGTTTCCTTGGAGAGGTGGAGATTGCTTTTGACTCATGGAACTTCG
AAAATCCATGTGATGAATGGTTTGTGCTTCAGCCCAAGGTGGAGTTGGCTCCTGATATTAGCCT
TCAATATAAAGGAGAGCTAACCATTGTTTTGCGTTATATTCCTCCAGAGGAGAACCTTATATTT
CCAGTAGAACAACCTCAAGGAAAGAAGATCTTTAAAAAGGGAAAGAAGAAAGAGTCACCTGCCA
TTTCTGGGGGAATACTTGAAGTTTTCATCAAAGAAGCAAAGAATCTGACAGCAGTAAAAGCAGG
GGGCACTTCTGACAGCTTCGTCAAGGGCTACCTGCTTCCTGATGATAACAAAGCCACCAAGCAC
AAAACTGCAGTTGTAAAAAAGAGTGTCAATCCTCAGTGGAACCATGTGTTCATATTCAGCGGTC
TGTATCCTCAGGATATACAGAATGCTTGCCTAGAACTCACCATCTGGGATAAGGAGGCCTTTTC
CAGCAACATCTTTCTAGGAGGTGTTCGTTTAAATTCCGGAAGCGGTATTAGCCATGGGAAGGCT
GTGGACTGGATGGACTCTCGTGGGGAAGAACAACGCCTTTGGCAAAAGATGGCTGACAACCCTG
GGACATCTGTAGAAGGAGTTCTCATGCTACGTTCTAGCATGGCAAAATGTAGGCTCTGAGGGCA
CCAGTTCTCCCAAAAATACATCTCTGGTTGCCAGCTGTTTCCTCTCAGTGAAAAGACTGGGGCT
TTGAAATCACTGAAGAGTATTAGGGCATAATAGGAAACATGTCAGTACTGTGAACATTTAGGAT
ATTGCTGATTGTCAAAAAACAAAACAAAAGTAAAAACCCATATCCTTTTATGTGTTCACTTACT
CGGGTCTCCCTTATTAGACAATAGGAAGTGTACCTTTCCAACAATAAAACTGTGCAAAGGCTCA
TAGGCTTTATGTTGATAAAAATGTTATGAGCTTATTGGAGAATACTGTTTAGATAGGGGGTTCC
CATTCTTTTCCCAACTGAGTTACTTAAGGTTTGTTGAGTCTGAGAAGAGAAGGGAACATGAAGG
AGGTAGATTGCTTGAAGAATAACAAAAAAAGATACTGGCCTCTTTTTCTTATATTTATTGTGGG
ATGGCCTGGGGATTGTTTGGAGGACAGGGTAGACTGCTGTTATAGTGGCAAACTTCGGGATGAA
GATGGTAATGTTTCAGGTTGTACTGGTGGGACTTTGGTAATTACAGAATTTATCATAAACTCCA
GCCTCCTTTTCAAGGTAAAGATAACTAAATGATTATGTGTGATCTCTCTCTCTCTCTCTC

hide sequence

RefSeq Acc Id:

XM_039099626 ⟹ XP_038955554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	15,461,215 - 15,630,091 (-)	NCBI
mRatBN7.2	X	12,775,529 - 12,957,585 (-)	NCBI

RefSeq Acc Id:

XM_039099627 ⟹ XP_038955555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	15,461,215 - 15,630,091 (-)	NCBI
mRatBN7.2	X	12,775,529 - 12,957,585 (-)	NCBI

RefSeq Acc Id:

XM_063279914 ⟹ XP_063135984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	15,461,215 - 15,702,659 (-)	NCBI

RefSeq Acc Id:

XM_063279915 ⟹ XP_063135985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	15,461,215 - 15,630,091 (-)	NCBI

RefSeq Acc Id:

XM_063279916 ⟹ XP_063135986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	15,461,215 - 15,702,660 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001420933	(Get FASTA)	NCBI Sequence Viewer
	NP_848016	(Get FASTA)	NCBI Sequence Viewer
	XP_008771292	(Get FASTA)	NCBI Sequence Viewer
	XP_017457480	(Get FASTA)	NCBI Sequence Viewer
	XP_038955554	(Get FASTA)	NCBI Sequence Viewer
	XP_038955555	(Get FASTA)	NCBI Sequence Viewer
	XP_063135984	(Get FASTA)	NCBI Sequence Viewer
	XP_063135985	(Get FASTA)	NCBI Sequence Viewer
	XP_063135986	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAC57423	(Get FASTA)	NCBI Sequence Viewer
	EDL97612	(Get FASTA)	NCBI Sequence Viewer
	EDL97613	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004785
	ENSRNOP00000094316
GenBank Protein	Q812E4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_848016 ⟸ NM_178333

- UniProtKB:

Q812E4 (UniProtKB/Swiss-Prot), A0A8I6AHG7 (UniProtKB/TrEMBL), A6K022 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSKNSEFINLSFLLDHEKEMILGVLKRDEYLKKVEDKRIRKLKNELLEAKRRSGKTHQEANRVC
VHCQKSLGLIFDRGAPCQACSLRVCSECRVTGLDGSWKCTVCAKVAQLRIISGEWFLEEKAKRF
KQVNVLGTDVVRQSILRRSPGSEEIQNQEQAHQGADKSDTLSSVRQKATHDGPKRKGFLLSKFR
SATRGEIKTPKAESGRSYSLDLDNQNLQSFKSVSGSDRGSTTSSDLTDQEAGRGAPKGSCSNGG
IPVTQRSPAPSARSVTSISSREHGFENSMALATIESISEELTKSHRRNTSGTPSIAVSGTSLSS
ERSRSELDLSESFAEDLEDTSSIRSRSVPGALDKDLNSLEDTEDGVDLVSSRFSANTHSLASGL
STSSQAGSDRKRSYLHVPDADSDTTSLNSMMSVYSETGDYGNVKVTGEILLHISYCYKTGGLYI
FVKNCRNLAIGDEKKQRTDAYVKSYLLPDKTRNNKRKTKIRTGTNPEFNETLKYTISHTQLETR
TLQLSVWHYDRFGRNSFLGEVEIAFDSWNFENPCDEWFVLQPKVELAPDISLQYKGELTIVLRY
IPPEENLIFPVEQPQGKKIFKKGKKKESPAISGGILEVFIKEAKNLTAVKAGGTSDSFVKGYLL
PDDNKATKHKTAVVKKSVNPQWNHVFIFSGLYPQDIQNACLELTIWDKEAFSSNIFLGGVRLNS
GSGISHGKAVDWMDSRGEEQRLWQKMADNPGTSVEGVLMLRSSMAKCRL

hide sequence

RefSeq Acc Id:	XP_008771292 ⟸ XM_008773070
- Peptide Label:	isoform X2
- UniProtKB:	Q812E4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSKNSEFINLSFLLDHEKEMILGVLKRDEYLKKVEDKRIRKLKNELLEAKRRSGKTHQEANRVC VHCQKSLGLIFDRGDPCQACSLRVCSECRVTGLDGSWKCTVCAKVAQLRIISGEWFLEEKAKRF KQVNVLGTDVVRQSILRRSPEIQNQEQAHQGADKSDTLSSVRQKATHDGPKRKGFLLSKFRSAT RGEIKTPKAESGRSYSLDLDNQNLQSFKSVSGSDRGSTTSSDLIDQEAGRGAPKGSCSNGGIPV TQRSPAPSARSVTSISSREHGFENSMALATIESISEELTKSHRRNTSGTPSIAVSGTSLSSERS RSELDLSESFAEDLEDTSSIRSRSVPGALDKDLNSLEDTEDGVDLVSSRFSANTHSLASGLSTS SQAGSDRKRSYLHVPDADSDTTSLNSMMSVYSETGDYGNVKVTGEILLHISYCYKTGGLYIFVK NCRNLAIGDEKKQRTDAYVKSYLLPDKTRNNKRKTKIRTGTNPEFNETLKYTISHTQLETRTLQ LSVWHYDRFGRNSFLGEVEIAFDSWNFENPCDEWFVLQPKVELAPDISLQYKGELTIVLRYIPP EENLIFPVEQPQGKKIFKKGKKKESPAISGGILEVFIKEAKNLTAVKAGGTSDSFVKGYLLPDD NKATKHKTAVVKKSVNPQWNHVFIFSGLYPQDIQNACLELTIWDKEAFSSNIFLGGVRLNSGSG ISHGKAVDWMDSRGEEQRLWQKMADNPGTSVEGVLMLRSSMAKCRL hide sequence

RefSeq Acc Id:	XP_017457480 ⟸ XM_017601991
- Peptide Label:	isoform X1
- UniProtKB:	Q812E4 (UniProtKB/Swiss-Prot), A0A8I6AHG7 (UniProtKB/TrEMBL), A6K022 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKNSEFINLSFLLDHEKEMILGVLKRDEYLKKVEDKRIRKLKNELLEAKRRSGKTHQEANRVC VHCQKSLGLIFDRGDPCQACSLRVCSECRVTGLDGSWKCTVCAKVAQLRIISGEWFLEEKAKRF KQVNVLGTDVVRQSILRRSPGSEEIQNQEQAHQGADKSDTLSSVRQKATHDGPKRKGFLLSKFR SATRGEIKTPKAESGRSYSLDLDNQNLQSFKSVSGSDRGSTTSSDLIDQEAGRGAPKGSCSNGG IPVTQRSPAPSARSVTSISSREHGFENSMALATIESISEELTKSHRRNTSGTPSIAVSGTSLSS ERSRSELDLSESFAEDLEDTSSIRSRSVPGALDKDLNSLEDTEDGVDLVSSRFSANTHSLASGL STSSQAGSDRKRSYLHVPDADSDTTSLNSMMSVYSETGDYGNVKVTGEILLHISYCYKTGGLYI FVKNCRNLAIGDEKKQRTDAYVKSYLLPDKTRNNKRKTKIRTGTNPEFNETLKYTISHTQLETR TLQLSVWHYDRFGRNSFLGEVEIAFDSWNFENPCDEWFVLQPKVELAPDISLQYKGELTIVLRY IPPEENLIFPVEQPQGKKIFKKGKKKESPAISGGILEVFIKEAKNLTAVKAGGTSDSFVKGYLL PDDNKATKHKTAVVKKSVNPQWNHVFIFSGLYPQDIQNACLELTIWDKEAFSSNIFLGGVRLNS GSGISHGKAVDWMDSRGEEQRLWQKMADNPGTSVEGVLMLRSSMAKCRL hide sequence

Ensembl Acc Id:

ENSRNOP00000004785 ⟸ ENSRNOT00000004785

RefSeq Acc Id:	XP_038955555 ⟸ XM_039099627
- Peptide Label:	isoform X1
- UniProtKB:	Q812E4 (UniProtKB/Swiss-Prot), A0A8I6AHG7 (UniProtKB/TrEMBL), A6K022 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955554 ⟸ XM_039099626
- Peptide Label:	isoform X1
- UniProtKB:	Q812E4 (UniProtKB/Swiss-Prot), A0A8I6AHG7 (UniProtKB/TrEMBL), A6K022 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000089213 ⟸ ENSRNOT00000113935

Ensembl Acc Id:

ENSRNOP00000094316 ⟸ ENSRNOT00000114439

RefSeq Acc Id:	XP_063135986 ⟸ XM_063279916
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063135984 ⟸ XM_063279914
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063135985 ⟸ XM_063279915
- Peptide Label:	isoform X3
- UniProtKB:	Q812E4 (UniProtKB/Swiss-Prot), G3V6F7 (UniProtKB/TrEMBL)

Protein Domains

C2 RabBD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q812E4-F1-model_v2	AlphaFold	Q812E4	1-753	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:631342	AgrOrtholog
BioCyc Gene	G2FUF-3025	BioCyc
Ensembl Genes	ENSRNOG00000003585	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000004785	ENTREZGENE
	ENSRNOT00000114439	ENTREZGENE
Gene3D-CATH	2.60.40.150	UniProtKB/Swiss-Prot
	3.30.40.10	UniProtKB/Swiss-Prot
InterPro	C2_dom	UniProtKB/Swiss-Prot
	C2_domain_sf	UniProtKB/Swiss-Prot
	FYVE_2	UniProtKB/Swiss-Prot
	Rab_BD	UniProtKB/Swiss-Prot
	SLP-4/5_C2A	UniProtKB/Swiss-Prot
	SYTL1-5_C2B	UniProtKB/Swiss-Prot
	SYTL5_FYVE	UniProtKB/Swiss-Prot
	Znf_FYVE_PHD	UniProtKB/Swiss-Prot
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot
KEGG Report	rno:302538	UniProtKB/Swiss-Prot
NCBI Gene	302538	ENTREZGENE
PANTHER	BITESIZE, ISOFORM I	UniProtKB/Swiss-Prot
	PTHR45716:SF6	UniProtKB/Swiss-Prot
Pfam	FYVE_2	UniProtKB/Swiss-Prot
	PF00168	UniProtKB/Swiss-Prot
PhenoGen	Sytl5	PhenoGen
PROSITE	PS50004	UniProtKB/Swiss-Prot
	RABBD	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003585	RatGTEx
SMART	SM00239	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49562	UniProtKB/Swiss-Prot
	SSF57903	UniProtKB/Swiss-Prot
UniProt	A0A8I6A9C3_RAT	UniProtKB/TrEMBL
	A0A8I6AHG7	ENTREZGENE, UniProtKB/TrEMBL
	A6K022	ENTREZGENE, UniProtKB/TrEMBL
	A6K023_RAT	UniProtKB/TrEMBL
	G3V6F7	ENTREZGENE, UniProtKB/TrEMBL
	Q812E4	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Sytl5	synaptotagmin-like 5		synaptotagmin 15	Name updated	1299863	APPROVED
2004-02-11	Slc1a7	synaptotagmin 15	Sytl5	synaptotagmin-like 5	Name updated to reflect Human and Mouse nomenclature	625702	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar