Mrfap1 (Morf4 family associated protein 1) - Rat Genome Database

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Gene: Mrfap1 (Morf4 family associated protein 1) Rattus norvegicus
Analyze
Symbol: Mrfap1
Name: Morf4 family associated protein 1
RGD ID: 628631
Description: Predicted to be located in nucleus and perinuclear region of cytoplasm. Orthologous to several human genes including MRFAP1 (Morf4 family associated protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AC111885.1; Man2b2; mannosidase, alpha, class 2B, member 2; MGC109522; Mof4 family associated protein 1; MORF4 family-associated protein 1; Pgr1; RGD1306635; T-cell activation protein; T-cell activation protein-related protein
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81478,227,225 - 78,229,002 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21474,002,512 - 74,004,289 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,969,003 - 74,004,281 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1478,444,817 - 78,446,594 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,685,661 - 79,687,438 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01476,130,632 - 76,132,409 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,973,384 - 78,975,161 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,973,364 - 78,975,166 (+)Ensemblrn6Rnor6.0
Rnor_5.01487,168,542 - 87,170,319 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41479,587,301 - 79,589,078 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1472,948,036 - 72,949,813 (+)NCBICelera
RGSC_v3.11479,589,680 - 79,590,816 (+)NCBI
Cytogenetic Map14q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. [Physical training aspect of exercise testing: the evaluation of Master's double 2 step test, augmented Master's test and Cooper's submaximum single-level load exercise test (author's transl)]. Fukuda I, etal., Kokyu To Junkan. 1975 Nov;23(11):985-92.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Nine new human Rhodopsin family G-protein coupled receptors: identification, sequence characterisation and evolutionary relationship. Gloriam DE, etal., Biochim Biophys Acta 2005 Apr 15;1722(3):235-46.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12393805   PMID:12477932  


Genomics

Comparative Map Data
Mrfap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81478,227,225 - 78,229,002 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21474,002,512 - 74,004,289 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,969,003 - 74,004,281 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1478,444,817 - 78,446,594 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,685,661 - 79,687,438 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01476,130,632 - 76,132,409 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,973,384 - 78,975,161 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,973,364 - 78,975,166 (+)Ensemblrn6Rnor6.0
Rnor_5.01487,168,542 - 87,170,319 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41479,587,301 - 79,589,078 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1472,948,036 - 72,949,813 (+)NCBICelera
RGSC_v3.11479,589,680 - 79,590,816 (+)NCBI
Cytogenetic Map14q21NCBI
MRFAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3846,640,685 - 6,642,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl46,640,091 - 6,642,729 (+)Ensemblhg38GRCh38
GRCh3746,642,412 - 6,644,456 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3646,693,346 - 6,695,350 (+)NCBIBuild 36Build 36hg18NCBI36
Celera46,544,106 - 6,546,110 (+)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef46,573,357 - 6,576,011 (+)NCBIHuRef
CHM1_146,640,191 - 6,642,845 (+)NCBICHM1_1
T2T-CHM13v2.046,617,045 - 6,619,089 (+)NCBIT2T-CHM13v2.0
Mrfap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39536,952,211 - 36,954,098 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl536,952,211 - 36,954,116 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38536,794,867 - 36,796,754 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl536,794,867 - 36,796,772 (-)Ensemblmm10GRCm38
MGSCv37537,186,106 - 37,187,993 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36537,083,116 - 37,084,953 (-)NCBIMGSCv36mm8
Celera534,246,147 - 34,248,034 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.26NCBI
MRFAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v236,909,739 - 6,912,017 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan146,838,786 - 6,840,951 (+)NCBINHGRI_mPanPan1
PanPan1.146,712,071 - 6,714,712 (+)NCBIPanPan1.1PanPan1.1panPan2
MRFAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1358,760,074 - 58,762,225 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl358,760,362 - 58,760,745 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha361,407,852 - 61,409,958 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0359,226,956 - 59,229,741 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl359,226,975 - 59,230,378 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1358,729,674 - 58,731,818 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0358,931,646 - 58,933,794 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0359,280,515 - 59,282,621 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC100621287
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl84,120,796 - 4,122,908 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.184,120,784 - 4,123,079 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.283,117,228 - 3,119,410 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRFAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12742,763,097 - 42,765,216 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2742,763,302 - 42,764,461 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604789,570,229 - 89,572,398 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Mrfap1
3 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:228
Count of miRNA genes:176
Interacting mature miRNAs:188
Transcripts:ENSRNOT00000008121, ENSRNOT00000058467
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
RH136865  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21474,004,017 - 74,004,219 (+)MAPPERmRatBN7.2
Rnor_6.01478,974,890 - 78,975,091NCBIRnor6.0
Rnor_5.01487,170,048 - 87,170,249UniSTSRnor5.0
RGSC_v3.41479,588,807 - 79,589,008UniSTSRGSC3.4
Celera1472,949,542 - 72,949,743UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000078562   ⟹   ENSRNOP00000074589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1478,193,725 - 78,218,818 (+)Ensembl
mRatBN7.2 Ensembl1473,969,003 - 73,994,087 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088221   ⟹   ENSRNOP00000075327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1478,193,725 - 78,227,724 (+)Ensembl
mRatBN7.2 Ensembl1473,969,003 - 74,003,011 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089759   ⟹   ENSRNOP00000071505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1474,002,505 - 74,004,281 (+)Ensembl
Rnor_6.0 Ensembl1478,973,364 - 78,975,166 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097552   ⟹   ENSRNOP00000095138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1478,193,725 - 78,215,639 (+)Ensembl
mRatBN7.2 Ensembl1473,969,003 - 73,991,688 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000122277   ⟹   ENSRNOP00000109433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1478,193,735 - 78,218,649 (+)Ensembl
RefSeq Acc Id: NM_001009264   ⟹   NP_001009264
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81478,227,225 - 78,229,002 (+)NCBI
mRatBN7.21474,002,512 - 74,004,289 (+)NCBI
Rnor_6.01478,973,384 - 78,975,161 (+)NCBI
Rnor_5.01487,168,542 - 87,170,319 (+)NCBI
RGSC_v3.41479,587,301 - 79,589,078 (+)RGD
Celera1472,948,036 - 72,949,813 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001009264 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88308 (Get FASTA)   NCBI Sequence Viewer  
  AAN03958 (Get FASTA)   NCBI Sequence Viewer  
  EDM00040 (Get FASTA)   NCBI Sequence Viewer  
  EDM00041 (Get FASTA)   NCBI Sequence Viewer  
  Q5M820 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001009264   ⟸   NM_001009264
- UniProtKB: Q8K3W6 (UniProtKB/Swiss-Prot),   Q5M820 (UniProtKB/Swiss-Prot),   A6IJX6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071505   ⟸   ENSRNOT00000089759
Ensembl Acc Id: ENSRNOP00000075327   ⟸   ENSRNOT00000088221
Ensembl Acc Id: ENSRNOP00000074589   ⟸   ENSRNOT00000078562
Ensembl Acc Id: ENSRNOP00000095138   ⟸   ENSRNOT00000097552
Ensembl Acc Id: ENSRNOP00000109433   ⟸   ENSRNOT00000122277
Protein Domains
Glycoside hydrolase family 38 central

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M820-F1-model_v2 AlphaFold Q5M820 1-125 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699377
Promoter ID:EPDNEW_R9902
Type:multiple initiation site
Name:Mrfap1_1
Description:Morf4 family associated protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01478,973,369 - 78,973,429EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628631 AgrOrtholog
BioCyc Gene G2FUF-15344 BioCyc
Ensembl Genes ENSRNOG00000055319 Ensembl
  ENSRNOG00000056162 Ensembl
IMAGE_CLONE IMAGE:7324285 IMAGE-MGC_LOAD
InterPro MRFAP1 UniProtKB/Swiss-Prot
KEGG Report rno:282585 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109522 IMAGE-MGC_LOAD
NCBI Gene 282585 ENTREZGENE
PANTHER MORF4 FAMILY-ASSOCIATED PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR31324 UniProtKB/Swiss-Prot
Pfam MRFAP1 UniProtKB/Swiss-Prot
PhenoGen Mrfap1 PhenoGen
RatGTEx ENSRNOG00000055319 RatGTEx
  ENSRNOG00000056162 RatGTEx
UniProt A0A0G2K8F6_RAT UniProtKB/TrEMBL
  A0A8I6AJ32_RAT UniProtKB/TrEMBL
  A0ABK0M3X1_RAT UniProtKB/TrEMBL
  A6IJX6 ENTREZGENE, UniProtKB/TrEMBL
  A6IJX7_RAT UniProtKB/TrEMBL
  MOFA1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q7TP34_RAT UniProtKB/TrEMBL
  Q8K3W6 ENTREZGENE
UniProt Secondary Q8K3W6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Mrfap1  Morf4 family associated protein 1  AC111885.1    Data merged from RGD:15010023 737654 PROVISIONAL
2021-09-02 AC111885.1    Man2b2  mannosidase, alpha, class 2B, member 2  Symbol and/or name change 19259462 PROVISIONAL
2021-08-09 Man2b2  mannosidase, alpha, class 2B, member 2  AC111885.1    Symbol and/or name change 19259462 PROVISIONAL
2019-11-08 AC111885.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2011-08-02 Mrfap1  Morf4 family associated protein 1  Mrfap1  Mof4 family associated protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Mrfap1  Mof4 family associated protein 1  Mrfap1  Morf4 family associated protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Mrfap1  Morf4 family associated protein 1      Symbol and Name updated 1299863 APPROVED
2003-02-27 Pgr1  T-cell activation protein      Symbol and Name status set to provisional 70820 PROVISIONAL