Hopx (HOP homeobox) - Rat Genome Database

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Gene: Hopx (HOP homeobox) Rattus norvegicus
Analyze
Symbol: Hopx
Name: HOP homeobox
RGD ID: 621841
Description: Predicted to enable histone deacetylase regulator activity. Predicted to be involved in chaperone-mediated protein complex assembly; positive regulation of gap junction assembly; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including lung alveolus development; positive regulation of skeletal muscle tissue regeneration; and trophectodermal cell differentiation. Predicted to be active in nucleus. Orthologous to human HOPX (HOP homeobox); INTERACTS WITH 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GIIg15b; global ischemia induced protein GIIG15B; global ischemia-induced gene 15B protein; global ischemia-induced protein 15B; Hod; homeobox only domain; homeodomain-only protein; LOC103693743; Obl; odd homeobox 1; odd homeobox protein 1; uncharacterized LOC103693743
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,410,235 - 31,437,189 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1431,410,221 - 31,437,188 (+)EnsemblGRCr8
mRatBN7.21431,055,912 - 31,082,909 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1431,075,148 - 31,082,909 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1431,452,981 - 31,460,729 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01432,761,314 - 32,769,062 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,245,966 - 31,253,714 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01433,354,803 - 33,362,547 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1433,354,807 - 33,362,551 (+)Ensemblrn6Rnor6.0
Rnor_5.01433,145,793 - 33,153,537 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41433,369,052 - 33,377,948 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1430,388,376 - 30,396,113 (+)NCBICelera
RGSC_v3.11433,369,055 - 33,377,945 (+)NCBI
Cytogenetic Map14p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
antimonite  (ISO)
antirheumatic drug  (ISO)
Archazolid B  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP)
cantharidin  (ISO)
carbon nanotube  (ISO)
CHIR 99021  (ISO)
Cuprizon  (EXP)
curcumin  (EXP)
cyclosporin A  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
diuron  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
folic acid  (ISO)
genistein  (EXP)
gentamycin  (EXP)
GSK-J4  (ISO)
isoprenaline  (ISO)
ketamine  (EXP)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodimethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
nitrofen  (ISO)
okadaic acid  (ISO)
p-chloromercuribenzoic acid  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
pravastatin  (EXP,ISO)
progesterone  (EXP,ISO)
resveratrol  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
streptozocin  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triazines  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
UNC1999  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
WIN 18446  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
7. Myocardin mRNA is augmented in the failing myocardium: expression profiling in the porcine model and human dilated cardiomyopathy. Torrado M, etal., J Mol Med (Berl). 2003 Sep;81(9):566-77. doi: 10.1007/s00109-003-0470-7. Epub 2003 Aug 13.
Additional References at PubMed
PMID:10811660   PMID:12297045   PMID:12297046   PMID:12975471   PMID:14516659   PMID:15489334   PMID:15790958   PMID:16410412   PMID:16510470   PMID:17192267   PMID:17409236   PMID:17576768  
PMID:20833366   PMID:34943964  


Genomics

Comparative Map Data
Hopx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,410,235 - 31,437,189 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1431,410,221 - 31,437,188 (+)EnsemblGRCr8
mRatBN7.21431,055,912 - 31,082,909 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1431,075,148 - 31,082,909 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1431,452,981 - 31,460,729 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01432,761,314 - 32,769,062 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,245,966 - 31,253,714 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01433,354,803 - 33,362,547 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1433,354,807 - 33,362,551 (+)Ensemblrn6Rnor6.0
Rnor_5.01433,145,793 - 33,153,537 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41433,369,052 - 33,377,948 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1430,388,376 - 30,396,113 (+)NCBICelera
RGSC_v3.11433,369,055 - 33,377,945 (+)NCBI
Cytogenetic Map14p11NCBI
HOPX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38456,647,998 - 56,681,706 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl456,647,989 - 56,681,877 (-)Ensemblhg38GRCh38
GRCh37457,514,164 - 57,547,462 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36457,208,921 - 57,242,322 (-)NCBIBuild 36Build 36hg18NCBI36
Celera455,011,890 - 55,053,984 (-)NCBICelera
Cytogenetic Map4q12NCBI
HuRef453,468,140 - 53,501,835 (-)NCBIHuRef
CHM1_1457,549,368 - 57,583,080 (-)NCBICHM1_1
T2T-CHM13v2.0460,135,864 - 60,169,690 (-)NCBIT2T-CHM13v2.0
Hopx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39577,234,831 - 77,262,970 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl577,234,835 - 77,262,968 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38577,086,986 - 77,115,123 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl577,086,988 - 77,115,121 (-)Ensemblmm10GRCm38
MGSCv37577,516,011 - 77,544,148 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36578,161,763 - 78,189,898 (-)NCBIMGSCv36mm8
Celera574,355,315 - 74,383,496 (-)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map541.45NCBI
Hopx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544714,417,014 - 14,417,797 (+)NCBIChiLan1.0ChiLan1.0
HOPX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2373,097,055 - 73,130,533 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1473,302,586 - 73,336,058 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0467,240,801 - 67,274,419 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1473,835,888 - 73,843,787 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl473,833,886 - 73,843,060 (+)EnsemblpanPan2panpan1.1
HOPX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11348,829,161 - 48,854,502 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1348,829,338 - 48,858,643 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1348,720,772 - 48,749,764 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01349,444,706 - 49,473,671 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1349,444,709 - 49,580,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11349,116,676 - 49,145,609 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01348,645,369 - 48,674,303 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01349,590,826 - 49,619,768 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hopx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528527,425,009 - 27,457,013 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648218,840,434 - 18,850,005 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648218,841,220 - 18,872,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOPX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl855,862,197 - 55,901,633 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1855,862,191 - 55,901,628 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2857,612,294 - 57,634,387 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOPX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1711,937,124 - 11,971,184 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl711,963,077 - 11,971,547 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606612,610,368 - 12,644,893 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hopx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476112,776,137 - 12,807,042 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476112,776,215 - 12,806,879 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Hopx
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11133,837,647 - 33,864,216 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hopx
181 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:449
Count of miRNA genes:248
Interacting mature miRNAs:291
Transcripts:ENSRNOT00000049774
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141787564536079022Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14939329839411170Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143123808072970315Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143112133339507682Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141891545442433608Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142252151767521517Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141889519263895192Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141790672654251504Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat

Markers in Region
AA875648  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21431,082,703 - 31,082,860 (+)MAPPERmRatBN7.2
Rnor_6.01433,362,347 - 33,362,503NCBIRnor6.0
Rnor_5.01433,153,337 - 33,153,493UniSTSRnor5.0
RGSC_v3.41433,377,748 - 33,377,904UniSTSRGSC3.4
Celera1430,395,913 - 30,396,069UniSTS
RH 3.4 Map14412.2UniSTS
Cytogenetic Map14p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 16 16

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC097433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF474162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF492685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000049774   ⟹   ENSRNOP00000044357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1431,410,221 - 31,437,188 (+)Ensembl
mRatBN7.2 Ensembl1431,075,148 - 31,082,909 (+)Ensembl
Rnor_6.0 Ensembl1433,354,807 - 33,362,551 (+)Ensembl
RefSeq Acc Id: NM_133621   ⟹   NP_598305
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,429,413 - 31,437,189 (+)NCBI
mRatBN7.21431,075,133 - 31,082,909 (+)NCBI
Rnor_6.01433,354,803 - 33,362,547 (+)NCBI
Rnor_5.01433,145,793 - 33,153,537 (+)NCBI
RGSC_v3.41433,369,052 - 33,377,948 (+)RGD
Celera1430,388,376 - 30,396,113 (+)RGD
Sequence:
RefSeq Acc Id: XM_039091595   ⟹   XP_038947523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,410,235 - 31,437,189 (+)NCBI
mRatBN7.21431,055,912 - 31,082,909 (+)NCBI
RefSeq Acc Id: XM_039091596   ⟹   XP_038947524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,414,169 - 31,437,189 (+)NCBI
mRatBN7.21431,059,887 - 31,082,909 (+)NCBI
RefSeq Acc Id: XM_039091597   ⟹   XP_038947525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,428,746 - 31,437,189 (+)NCBI
mRatBN7.21431,074,465 - 31,082,909 (+)NCBI
RefSeq Acc Id: XM_039091598   ⟹   XP_038947526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,428,892 - 31,437,189 (+)NCBI
mRatBN7.21431,074,641 - 31,082,909 (+)NCBI
RefSeq Acc Id: NP_598305   ⟸   NM_133621
- UniProtKB: Q8R4G4 (UniProtKB/Swiss-Prot),   Q78ZR5 (UniProtKB/Swiss-Prot),   A6JCV9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000044357   ⟸   ENSRNOT00000049774
RefSeq Acc Id: XP_038947523   ⟸   XM_039091595
- Peptide Label: isoform X1
- UniProtKB: Q78ZR5 (UniProtKB/Swiss-Prot),   Q8R4G4 (UniProtKB/Swiss-Prot),   A6JCV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947524   ⟸   XM_039091596
- Peptide Label: isoform X1
- UniProtKB: Q78ZR5 (UniProtKB/Swiss-Prot),   Q8R4G4 (UniProtKB/Swiss-Prot),   A6JCV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947525   ⟸   XM_039091597
- Peptide Label: isoform X1
- UniProtKB: Q78ZR5 (UniProtKB/Swiss-Prot),   Q8R4G4 (UniProtKB/Swiss-Prot),   A6JCV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947526   ⟸   XM_039091598
- Peptide Label: isoform X1
- UniProtKB: Q78ZR5 (UniProtKB/Swiss-Prot),   Q8R4G4 (UniProtKB/Swiss-Prot),   A6JCV9 (UniProtKB/TrEMBL)
Protein Domains
Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q78ZR5-F1-model_v2 AlphaFold Q78ZR5 1-73 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621841 AgrOrtholog
BioCyc Gene G2FUF-15978 BioCyc
Ensembl Genes ENSRNOG00000024689 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000049774 ENTREZGENE
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7098349 IMAGE-MGC_LOAD
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot
  Homeobox_dom UniProtKB/Swiss-Prot
  HOPX UniProtKB/Swiss-Prot
KEGG Report rno:171160 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91403 IMAGE-MGC_LOAD
NCBI Gene 171160 ENTREZGENE
PANTHER HOMEODOMAIN-ONLY PROTEIN UniProtKB/Swiss-Prot
  PTHR21408 UniProtKB/Swiss-Prot
Pfam Homeodomain UniProtKB/Swiss-Prot
PhenoGen Hopx PhenoGen
PROSITE HOMEOBOX_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000024689 RatGTEx
SMART HOX UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot
UniProt A0A8L2QMF2_RAT UniProtKB/TrEMBL
  A6JCV9 ENTREZGENE, UniProtKB/TrEMBL
  HOP_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q8R4G4 ENTREZGENE
UniProt Secondary Q8R4G4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Hopx  HOP homeobox  LOC103693743  uncharacterized LOC103693743  Data merged from RGD:9231553 737654 PROVISIONAL
2014-08-25 LOC103693743  uncharacterized LOC103693743      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-25 Hopx  HOP homeobox  Hod  homeobox only domain  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Hod  homeobox only domain  GIIg15b  global ischemia induced protein GIIG15B  Symbol and Name updated 1299863 APPROVED
2002-08-07 GIIg15b  global ischemia induced protein GIIG15B      Symbol and Name status set to provisional 70820 PROVISIONAL