Kctd1 (potassium channel tetramerization domain containing 1) - Rat Genome Database

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Gene: Kctd1 (potassium channel tetramerization domain containing 1) Rattus norvegicus
Analyze
Symbol: Kctd1
Name: potassium channel tetramerization domain containing 1
RGD ID: 621566
Description: Predicted to enable identical protein binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in scalp-ear-nipple syndrome. Orthologous to human KCTD1 (potassium channel tetramerization domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BTB/POZ domain-containing protein KCTD1; LOC103694168; potassium channel tetramerisation domain containing 1; uncharacterized LOC103694168; Vad; Vad5; vitamin A-deficient testicular protein 5; vitamin A-deficient testicular protein 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,396,947 - 6,591,026 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl186,396,947 - 6,515,191 (-)EnsemblGRCr8
mRatBN7.2186,122,390 - 6,316,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,122,390 - 6,317,393 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx186,347,923 - 6,443,402 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0187,135,540 - 7,231,031 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,406,120 - 6,501,549 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0186,374,778 - 6,474,990 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,374,778 - 6,474,990 (-)Ensemblrn6Rnor6.0
Rnor_5.0186,336,572 - 6,433,360 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4186,225,049 - 6,324,832 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera186,151,583 - 6,246,756 (-)NCBICelera
RGSC_v3.1186,225,886 - 6,230,085 (-)NCBI
Cytogenetic Map18p13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12878178   PMID:14701905   PMID:15057822   PMID:19115315   PMID:25416956   PMID:27152988  


Genomics

Comparative Map Data
Kctd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,396,947 - 6,591,026 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl186,396,947 - 6,515,191 (-)EnsemblGRCr8
mRatBN7.2186,122,390 - 6,316,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,122,390 - 6,317,393 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx186,347,923 - 6,443,402 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0187,135,540 - 7,231,031 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,406,120 - 6,501,549 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0186,374,778 - 6,474,990 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,374,778 - 6,474,990 (-)Ensemblrn6Rnor6.0
Rnor_5.0186,336,572 - 6,433,360 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4186,225,049 - 6,324,832 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera186,151,583 - 6,246,756 (-)NCBICelera
RGSC_v3.1186,225,886 - 6,230,085 (-)NCBI
Cytogenetic Map18p13NCBI
KCTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381826,454,910 - 26,657,473 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1826,454,910 - 26,657,401 (-)Ensemblhg38GRCh38
GRCh371824,034,874 - 24,237,437 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361822,288,872 - 22,474,306 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1820,845,489 - 21,030,918 (-)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1820,884,642 - 21,087,047 (-)NCBIHuRef
CHM1_11823,962,322 - 24,164,829 (-)NCBICHM1_1
T2T-CHM13v2.01826,649,034 - 26,851,482 (-)NCBIT2T-CHM13v2.0
Kctd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391815,101,742 - 15,284,503 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1815,101,742 - 15,284,503 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381814,968,685 - 15,151,446 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1814,968,685 - 15,151,446 (-)Ensemblmm10GRCm38
MGSCv371815,127,194 - 15,309,955 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361815,111,587 - 15,294,464 (-)NCBIMGSCv36mm8
Celera1815,190,943 - 15,377,226 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map188.28NCBI
Kctd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540214,474,259 - 14,670,329 (-)Ensembl
ChiLan1.0NW_00495540214,478,702 - 14,573,154 (-)NCBIChiLan1.0ChiLan1.0
KCTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21743,884,173 - 44,087,280 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11829,576,769 - 29,779,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01819,711,846 - 19,914,897 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11823,317,307 - 23,519,195 (-)NCBIPanPan1.1PanPan1.1panPan2
KCTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1762,119,658 - 62,214,365 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl762,118,600 - 62,213,593 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha761,464,661 - 61,648,487 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0762,079,891 - 62,263,653 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl762,169,268 - 62,263,633 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1761,752,645 - 61,936,218 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0761,854,535 - 61,949,020 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0762,067,915 - 62,251,809 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Kctd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494458,045,310 - 58,233,851 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365505,581,738 - 5,679,405 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365505,581,982 - 5,771,090 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6111,048,202 - 111,148,703 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16111,048,193 - 111,237,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26104,006,793 - 104,192,833 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11853,933,015 - 54,132,849 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1854,039,500 - 54,133,549 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605028,660,787 - 28,863,284 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247705,775,458 - 5,968,699 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247705,775,317 - 5,967,929 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Kctd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11528,783,714 - 28,877,050 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Kctd1
1510 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:21
Count of miRNA genes:20
Interacting mature miRNAs:21
Transcripts:ENSRNOT00000061504
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18125022372Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)18125071266Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18115642423Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
D18Rat134  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8186,497,380 - 6,497,573 (+)Marker Load Pipeline
mRatBN7.2186,222,839 - 6,223,031 (+)MAPPERmRatBN7.2
Rnor_6.0186,480,269 - 6,480,460NCBIRnor6.0
Rnor_5.0186,438,639 - 6,438,830UniSTSRnor5.0
RGSC_v3.4186,330,094 - 6,330,671RGDRGSC3.4
RGSC_v3.4186,330,111 - 6,330,302UniSTSRGSC3.4
Celera186,252,035 - 6,252,226UniSTS
RGSC_v3.1186,330,104 - 6,330,671RGD
RH 3.4 Map1867.8UniSTS
RH 3.4 Map1867.8RGD
RH 2.0 Map18805.1RGD
SHRSP x BN Map182.44RGD
Cytogenetic Map18p13UniSTS
D18Got5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,292,060 - 6,292,213 (+)MAPPERmRatBN7.2
Rnor_6.0186,552,532 - 6,552,684NCBIRnor6.0
Rnor_5.0186,509,066 - 6,509,218UniSTSRnor5.0
RGSC_v3.4186,399,497 - 6,399,651RGDRGSC3.4
RGSC_v3.4186,399,498 - 6,399,651UniSTSRGSC3.4
Celera186,320,909 - 6,321,062UniSTS
RGSC_v3.1186,399,498 - 6,399,651RGD
RH 3.4 Map180.0UniSTS
RH 3.4 Map180.0RGD
RH 2.0 Map18826.4RGD
Cytogenetic Map18p13UniSTS
D18Chm14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,135,447 - 6,135,669 (+)MAPPERmRatBN7.2
Rnor_6.0186,387,873 - 6,388,091NCBIRnor6.0
Rnor_5.0186,349,667 - 6,349,885UniSTSRnor5.0
RGSC_v3.4186,238,102 - 6,238,320UniSTSRGSC3.4
Celera186,164,608 - 6,164,826UniSTS
Cytogenetic Map18p13UniSTS
RH133603  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,224,514 - 6,224,718 (+)MAPPERmRatBN7.2
Rnor_6.0186,481,944 - 6,482,147NCBIRnor6.0
Rnor_5.0186,440,314 - 6,440,517UniSTSRnor5.0
RGSC_v3.4186,331,786 - 6,331,989UniSTSRGSC3.4
Celera186,253,710 - 6,253,913UniSTS
RH 3.4 Map1865.83UniSTS
Cytogenetic Map18p13UniSTS
RH144274  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,222,111 - 6,222,303 (+)MAPPERmRatBN7.2
Rnor_6.0186,479,541 - 6,479,732NCBIRnor6.0
Rnor_5.0186,437,911 - 6,438,102UniSTSRnor5.0
RGSC_v3.4186,329,383 - 6,329,574UniSTSRGSC3.4
Celera186,251,307 - 6,251,498UniSTS
RH 3.4 Map1878.2UniSTS
Cytogenetic Map18p13UniSTS
AI029850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,123,157 - 6,123,366 (+)MAPPERmRatBN7.2
Rnor_6.0186,375,546 - 6,375,754NCBIRnor6.0
Rnor_5.0186,337,340 - 6,337,548UniSTSRnor5.0
RGSC_v3.4186,225,817 - 6,226,025UniSTSRGSC3.4
Celera186,152,351 - 6,152,559UniSTS
RH 3.4 Map1842.2UniSTS
Cytogenetic Map18p13UniSTS
AA943825  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,283,095 - 6,283,245 (+)MAPPERmRatBN7.2
Rnor_6.0186,543,563 - 6,543,712NCBIRnor6.0
Rnor_5.0186,500,097 - 6,500,246UniSTSRnor5.0
RGSC_v3.4186,390,529 - 6,390,678UniSTSRGSC3.4
Celera186,311,940 - 6,312,089UniSTS
RH 3.4 Map1879.0UniSTS
Cytogenetic Map18p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 91 59 6 355 191 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000061504   ⟹   ENSRNOP00000058222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl186,396,947 - 6,515,191 (-)Ensembl
mRatBN7.2 Ensembl186,122,390 - 6,317,393 (-)Ensembl
Rnor_6.0 Ensembl186,374,778 - 6,474,990 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110896   ⟹   ENSRNOP00000092708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl186,396,947 - 6,428,127 (-)Ensembl
mRatBN7.2 Ensembl186,122,390 - 6,220,278 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000171210   ⟹   ENSRNOP00000109347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl186,396,947 - 6,492,302 (-)Ensembl
RefSeq Acc Id: NM_001100516   ⟹   NP_001093986
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,396,947 - 6,492,103 (-)NCBI
mRatBN7.2186,122,390 - 6,217,561 (-)NCBI
Rnor_6.0186,374,778 - 6,474,990 (-)NCBI
Rnor_5.0186,336,572 - 6,433,360 (-)NCBI
Celera186,151,583 - 6,246,756 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096741   ⟹   XP_038952669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,397,006 - 6,591,026 (-)NCBI
mRatBN7.2186,122,391 - 6,316,434 (-)NCBI
RefSeq Acc Id: XM_039096742   ⟹   XP_038952670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,397,006 - 6,499,411 (-)NCBI
mRatBN7.2186,122,391 - 6,219,289 (-)NCBI
RefSeq Acc Id: XM_039096743   ⟹   XP_038952671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,397,006 - 6,515,088 (-)NCBI
mRatBN7.2186,122,391 - 6,240,549 (-)NCBI
RefSeq Acc Id: XM_063277266   ⟹   XP_063133336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,401,898 - 6,492,435 (-)NCBI
RefSeq Acc Id: NP_001093986   ⟸   NM_001100516
- UniProtKB: A0A8I6GJX3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000058222   ⟸   ENSRNOT00000061504
RefSeq Acc Id: XP_038952669   ⟸   XM_039096741
- Peptide Label: isoform X2
- UniProtKB: A0A140TAI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952671   ⟸   XM_039096743
- Peptide Label: isoform X3
- UniProtKB: Q8R4G8 (UniProtKB/Swiss-Prot),   A6KLU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952670   ⟸   XM_039096742
- Peptide Label: isoform X3
- UniProtKB: Q8R4G8 (UniProtKB/Swiss-Prot),   A6KLU0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092708   ⟸   ENSRNOT00000110896
RefSeq Acc Id: XP_063133336   ⟸   XM_063277266
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000109347   ⟸   ENSRNOT00000171210
Protein Domains
BTB   BTB/POZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R4G8-F1-model_v2 AlphaFold Q8R4G8 1-257 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700646
Promoter ID:EPDNEW_R11170
Type:single initiation site
Name:Kctd1_1
Description:potassium channel tetramerization domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0186,475,004 - 6,475,064EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621566 AgrOrtholog
BioCyc Gene G2FUF-8297 BioCyc
Ensembl Genes ENSRNOG00000016467 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000171210 ENTREZGENE
Gene3D-CATH Potassium Channel Kv1.1, Chain A UniProtKB/Swiss-Prot
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot
  BTB_POZ_KCTD1 UniProtKB/Swiss-Prot
  KCTD1-15-like_C UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot
  T1-type_BTB UniProtKB/Swiss-Prot
NCBI Gene Kctd1 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD1 UniProtKB/Swiss-Prot
  POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING UniProtKB/Swiss-Prot
Pfam BTB_2 UniProtKB/Swiss-Prot
  KCTD1-15_CTD UniProtKB/Swiss-Prot
PhenoGen Kctd1 PhenoGen
RatGTEx ENSRNOG00000016467 RatGTEx
SMART BTB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot
UniProt A0A140TAI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJX3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M2H2_RAT UniProtKB/TrEMBL
  A6KLU0 ENTREZGENE, UniProtKB/TrEMBL
  A6KLU2_RAT UniProtKB/TrEMBL
  KCTD1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Kctd1  potassium channel tetramerization domain containing 1  LOC103694168  uncharacterized LOC103694168  Data merged from RGD:9381850 737654 PROVISIONAL
2014-08-25 LOC103694168  uncharacterized LOC103694168      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-07-09 Kctd1  potassium channel tetramerization domain containing 1  Kctd1  potassium channel tetramerisation domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Kctd1  potassium channel tetramerisation domain containing 1  Vad5  vitamin A-deficient testicular protein 5  Symbol and Name updated 1299863 APPROVED
2005-07-08 Vad5  vitamin A-deficient testicular protein 5  Vad    Symbol updated 1299863 APPROVED
2002-08-07 Vad  vitamin A-deficient testicular protein 5      Symbol and Name status set to provisional 70820 PROVISIONAL