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Gene: Gcnt1 (glucosaminyl (N-acetyl) transferase 1) Rattus norvegicus

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Symbol:

Gcnt1

Name:

glucosaminyl (N-acetyl) transferase 1

RGD ID:

621370

Description:

Enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity. Involved in response to insulin. Located in extracellular space. Orthologous to human GCNT1 (glucosaminyl (N-acetyl) transferase 1); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase; beta1,6 N-acetylglucosaminyltransferase; core 2 GlcNAc-T; enzymatic glycosylation-regulating; enzymatic glycosylation-regulating gene; glucosaminyl (N-acetyl) transferase 1, core 2; glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase); glucosaminyl transferase 1, core 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GCNT1 (glucosaminyl (N-acetyl) transferase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Gcnt1 (glucosaminyl (N-acetyl) transferase 1, core 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gcnt1 (glucosaminyl (N-acetyl) transferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GCNT1 (glucosaminyl (N-acetyl) transferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GCNT1 (glucosaminyl (N-acetyl) transferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gcnt1 (glucosaminyl (N-acetyl) transferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GCNT1 (glucosaminyl (N-acetyl) transferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GCNT1 (glucosaminyl (N-acetyl) transferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gcnt1 (glucosaminyl (N-acetyl) transferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gcnt1 (glucosaminyl (N-acetyl) transferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GCNT1 (glucosaminyl (N-acetyl) transferase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gcnt1 (glucosaminyl (N-acetyl) transferase 1, core 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-15	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-16	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-17	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-18	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-18	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-19	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-19	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gcnt1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gcnt1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	224,145,104 - 224,182,496 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	224,141,108 - 224,185,741 (-)	Ensembl				GRCr8
mRatBN7.2	1	214,718,344 - 214,755,735 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	214,718,293 - 214,758,776 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	223,052,032 - 223,057,036 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	229,988,579 - 229,993,584 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	222,806,576 - 222,811,580 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	236,547,729 - 236,585,037 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	236,580,034 - 236,585,035 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	243,851,152 - 243,888,286 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	220,824,976 - 220,829,980 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	212,034,132 - 212,039,135 (-)	NCBI		Celera
RGSC_v3.1	1	220,988,998 - 220,994,003 (-)	NCBI
Cytogenetic Map	1	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Diabetes Mellitus (IDA)

Experimental Liver Cirrhosis (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

choline (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

copper(II) chloride (ISO)

corticosterone (EXP)

Cuprizon (EXP)

decabromodiphenyl ether (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

furan (EXP)

hydrogen peroxide (ISO)

L-methionine (ISO)

lead diacetate (ISO)

lipopolysaccharide (ISO)

melphalan (ISO)

mercury dibromide (ISO)

methimazole (EXP)

methotrexate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

monobenzyl phthalate (ISO)

Monobutylphthalate (ISO)

monoethyl phthalate (ISO)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

okadaic acid (ISO)

p-chloromercuribenzoic acid (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

progesterone (EXP,ISO)

propanal (ISO)

raloxifene (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sulindac (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zinc atom (EXP)

zinc sulfate (EXP)

zinc(0) (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion molecule production (ISO)

glycoprotein biosynthetic process (ISO)

kidney morphogenesis (ISO)

leukocyte tethering or rolling (ISO)

positive regulation of leukocyte tethering or rolling (ISO)

protein O-linked glycosylation via N-acetyl-galactosamine (ISO)

response to insulin (IEP)

tissue morphogenesis (ISO)

Cellular Component

extracellular space (IDA)

Golgi cisterna (ISO)

Golgi membrane (IEA)

membrane (IEA)

nuclear speck (ISO)

trans-Golgi network (ISO)

Molecular Function

beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity (IBA,IDA,ISO)

glycosyltransferase activity (IEA)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	Identification and characterization of a gene regulating enzymatic glycosylation which is induced by diabetes and hyperglycemia specifically in rat cardiac tissue.	Nishio Y, etal., J Clin Invest 1995 Oct;96(4):1759-67.
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	beta1,6 N-acetylglucosaminyltransferase (core 2 GlcNAc-T) expression in normal rat tissues and different cell lines: evidence for complex mechanisms of regulation.	VanderElst IE and Datti A, Glycobiology. 1998 Jul;8(7):731-40.

Additional References at PubMed

PMID:19349303	PMID:23027862

Genomics

Comparative Map Data

Gcnt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	224,145,104 - 224,182,496 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	224,141,108 - 224,185,741 (-)	Ensembl				GRCr8
mRatBN7.2	1	214,718,344 - 214,755,735 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	214,718,293 - 214,758,776 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	223,052,032 - 223,057,036 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	229,988,579 - 229,993,584 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	222,806,576 - 222,811,580 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	236,547,729 - 236,585,037 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	236,580,034 - 236,585,035 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	243,851,152 - 243,888,286 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	220,824,976 - 220,829,980 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	212,034,132 - 212,039,135 (-)	NCBI		Celera
RGSC_v3.1	1	220,988,998 - 220,994,003 (-)	NCBI
Cytogenetic Map	1	q43	NCBI

GCNT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	76,393,869 - 76,507,416 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	76,419,850 - 76,651,203 (+)	Ensembl			hg38	GRCh38
GRCh37	9	79,008,785 - 79,122,332 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	78,246,402 - 78,312,152 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	76,303,699 - 76,351,884	NCBI
Celera	9	49,631,307 - 49,697,066 (+)	NCBI		Celera
Cytogenetic Map	9	q21.13	NCBI
HuRef	9	48,885,850 - 48,951,687 (+)	NCBI		HuRef
CHM1_1	9	79,203,394 - 79,269,154 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	88,550,440 - 88,663,979 (+)	NCBI		T2T-CHM13v2.0

Gcnt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	17,303,505 - 17,350,208 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	17,303,505 - 17,350,208 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	17,326,141 - 17,372,844 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	17,326,141 - 17,372,844 (-)	Ensembl			mm10	GRCm38
MGSCv37	19	17,400,631 - 17,431,157 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	16,956,224 - 17,002,195 (-)	NCBI		MGSCv36	mm8
MGSCv36	19	17,393,162 - 17,439,863 (-)	NCBI		MGSCv36	mm8
Celera	19	18,000,378 - 18,044,861 (-)	NCBI		Celera
Cytogenetic Map	19	B	NCBI
cM Map	19	12.75	NCBI

Gcnt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955512	2,827,321 - 2,857,777 (-)	Ensembl
ChiLan1.0	NW_004955512	2,827,321 - 2,857,777 (-)	NCBI	ChiLan1.0	ChiLan1.0

GCNT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	75,559,426 - 75,673,514 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	75,565,359 - 75,679,453 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	48,333,104 - 48,400,128 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	75,301,818 - 75,368,396 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	75,363,369 - 75,364,655 (+)	Ensembl			panPan2	panpan1.1

GCNT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	81,985,519 - 82,017,420 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	82,451,255 - 82,483,169 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	82,401,310 - 82,433,256 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	82,401,310 - 82,433,242 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	82,153,115 - 82,221,802 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	81,906,815 - 81,938,756 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	82,634,130 - 82,666,060 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gcnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	129,174,959 - 129,208,276 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936503	11,994,841 - 11,997,901 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936503	11,994,798 - 11,997,990 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GCNT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	229,429,066 - 229,468,268 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	229,429,020 - 229,602,834 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

GCNT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	87,502,202 - 87,506,171 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	87,503,999 - 87,505,285 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	75,917,851 - 75,961,305 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gcnt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624811	3,930,973 - 3,970,908 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624811	3,930,673 - 3,973,755 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gcnt1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	17,410,096 - 17,415,097 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gcnt1
199 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	574
Count of miRNA genes:	267
Interacting mature miRNAs:	347
Transcripts:	ENSRNOT00000074939
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8693637	Alc29	Alcohol consumption QTL 29	2.7	0.258	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	243666627	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	207243873	252243873	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	181059071	226059071	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	181059071	226059071	Rat
61455	Niddm7	Non-insulin dependent diabetes mellitus QTL 7	5.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	223964326	248681945	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	182039247	227039247	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	183564652	228564652	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	193964073	238964073	Rat
8693661	Alc34	Alcohol consumption QTL 34	2.2	0.611	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	238041033	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	181059071	226059071	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	181059071	226059071	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	181059071	226059071	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	194575422	239575422	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	193400541	238400541	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	182535316	227535316	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	181059071	226059071	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	153679879	232414077	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	160574007	235238518	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	181059071	226059071	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	207243873	252243873	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	181059071	226059071	Rat
2314011	Gluco56	Glucose level QTL 56			blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	209203273	254203273	Rat
8552891	Epfw5	Epididymal fat weight QTL 5	4.4		epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	1	202543537	247543537	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	8e-07	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	205674651	250674651	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	207243873	252243873	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
634312	Bp143	Blood pressure QTL 143	3	0.0002	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	203300512	229359342	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	180739993	225739993	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	172718770	228180370	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	188241285	250779312	Rat
2292218	Kidm35	Kidney mass QTL 35			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	208798288	253798288	Rat
1331790	Bp201	Blood pressure QTL 201	3.127		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	221820316	234540296	Rat
1300168	Bp170	Blood pressure QTL 170	2.76		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	192995199	237995199	Rat
61403	Niddm4	Non-insulin dependent diabetes mellitus QTL 4			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	201464383	246464383	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1641926	Teswt2	Testicular weight QTL 2	2.82		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	1	203675682	248675682	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	205674651	250674651	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	185979875	230979875	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
1582206	Kidm33	Kidney mass QTL 33	6.9		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	197807365	233480676	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	193400541	238400541	Rat
634340	Hcar5	Hepatocarcinoma resistance QTL 5	8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	223964326	236074012	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	173363824	227535316	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	207099883	252099883	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
8693618	Alc25	Alcohol consumption QTL 25	3	0.28	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	238041033	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	191260175	236260175	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	111949780	228180370	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2325727	Pia41	Pristane induced arthritis QTL 41			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	188241285	233241285	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	355	192	11	143	80	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001443558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_022276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	S79797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000074939 ⟹ ENSRNOP00000066013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	236,580,034 - 236,585,035 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094573 ⟹ ENSRNOP00000085251

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	224,145,566 - 224,158,030 (-)	Ensembl
mRatBN7.2 Ensembl	1	214,718,830 - 214,758,776 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108297 ⟹ ENSRNOP00000083711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	224,144,838 - 224,182,399 (-)	Ensembl
mRatBN7.2 Ensembl	1	214,718,344 - 214,755,569 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118591 ⟹ ENSRNOP00000095789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	224,144,862 - 224,182,347 (-)	Ensembl
mRatBN7.2 Ensembl	1	214,718,293 - 214,726,536 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119573 ⟹ ENSRNOP00000080877

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	224,144,992 - 224,158,030 (-)	Ensembl
mRatBN7.2 Ensembl	1	214,718,293 - 214,755,569 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137924 ⟹ ENSRNOP00000098683

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	224,141,108 - 224,182,298 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000140590 ⟹ ENSRNOP00000112691

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	224,144,901 - 224,185,741 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159933 ⟹ ENSRNOP00000109845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	224,144,545 - 224,167,737 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167113 ⟹ ENSRNOP00000100925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	224,145,581 - 224,182,335 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172585 ⟹ ENSRNOP00000112535

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	224,146,546 - 224,182,347 (-)	Ensembl

RefSeq Acc Id:

NM_022276 ⟹ NP_071612

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	224,145,104 - 224,150,108 (-)	NCBI
mRatBN7.2	1	214,718,344 - 214,723,348 (-)	NCBI
Rnor_6.0	1	236,580,034 - 236,585,037 (+)	NCBI
Rnor_5.0	1	243,851,152 - 243,888,286 (+)	NCBI
RGSC_v3.4	1	220,824,976 - 220,829,980 (-)	RGD
Celera	1	212,034,132 - 212,039,135 (-)	RGD

Sequence:

show sequence

AGTTCAGCAAGGCCTTTTAAGTCCATTTTGAATACTCAGCAGAATGAATTGTCTTGCTTCCAGA
TGTGTGGATCACATTCACGATTGTTCTTAACCTTTTTCTCTAAAGTGAGTCACCGTCCTAAGTC
AGCAAAAGGCAGAATGGATCTGACCCTTGCAAGCGTCTTCTGCCTGTTGATGTCACCAGGAGGA
ACTTGGTGACGATATGAAGATAGAGGTGCTGATTCTTAGGACCTGCAGAGTCCTGTGCTCCTGT
ATAGCCATAGGTCCAGCTTTTGAGACAGTTTCTTTTTTTATAGTCCTGGTTGTCCTGGAACTCA
CTACATAGACCAGACTTGCCTCTGCCCCCTAGGTGCTGGGATAAAGGTGTGTGTTACCTCGTGG
GATCTCAGATGTCTATGGTAGGATATTTTAGGACGTCCTTGTTTTAGGTTCGGTGCCTATTTTT
ACCCCCAGTTTCCGGCTTCAATTTGAGAACAATGGGTCTTCTATGAAGCGATCTCTATTCTCTA
ATTAAGACAACCTCTTTTTTTTTTTTTTTTTCTAAATAAAATCTGGTCTCATAGCAAAGGGGAT
AGTTTTGAGCCTGAGAAGACGCTGTAAACAGTTGCATTTACTAAGTGTGTTCTTTGCTATATTT
TCTTTTGCTTTTAGCTCTGTCCTGTGTGGTGCTCTATTGTCCCTCTTACAAACTGGCAACTTAT
CTGGCCACAACAGAAGGACACTGGAGGAAACCTCACTGGCGTCCAAGGCCTAGAAGATTGTTCC
ACCACCCCAGGGAGCCTCTGAGTGTTCTTTGAAATGCTGAGAAACTTGTTTCGGAGGAGACTTT
TTTCTTATCCTACAAAATACTACTTCATGGTTCTTGTTCTGTCTCTAATTACCTTCTCTGTTGT
AAGAATTCATCAGAAGCCTGAATTTGTTAGTGTCAGTCACTTGGAGCTTTCTGGAGATGATCCC
AATAGCAATGTTAATTGCACCAAAGTTTTACAGGGTGACCCAGAAGAAATCCAGAAGGTGAAGC
TTGAGATACTAACAGTGCAATTCAAGAAGCGTCCGAGGCGGACACCGCATGACTATATAAACAT
GACCCGGGACTGCGCCTCCTTCATCAGGACACGCAAATATATTATGGAGCCCCTTACTAAAGAA
GAGGTTGGCTTTCCAATTGCATATTCCATAGTGGTTCATCATAAGATTGACATGCTTGACAGGC
TCCTGAGGGCCATCTATATGCCACAGAATTTCTACTGCATTCACGTGGACAGAAAAGCAGAGGA
ATCCTTTTTAGCCGCGGTGCAGGGCATTGCATCCTGCTTTGATAATGTCTTTGTGGCCAGCCAG
TTGGAGAGTGTTGTATACGCCTCCTGGAGTCGGGTTAAGGCTGACCTCAACTGCATGAAGGACC
TGTACAGAATGAATGCAAACTGGAAGTACTTGATCAATCTTTGTGGTATGGATTTCCCTATTAA
AACCAACCTGGAAATTGTCAGGAAGCTCAAGTCCTTCACAGGGGAAAACAGCCTGGAAACTGAG
AAGATGCCTCCCAACAAGGAAGAGAGGTGGAAAAAACGATACACGGTTGTGGACGGGAAGCTGA
CAAACACTGGAGTTGTCAAGGCGCAGCCTCCACTCAAAACTCCTCTCTTTTCAGGCAGCGCCTA
TTTCGTGGTCACTAGGGAATATGTAGGCTATGTGCTGGAAAATAAAAATATTCAAAAGTTCATG
GAATGGGCACAGGACACATACAGCCCGGATGAGTTCCTCTGGGCCACCATCCAAAGGATCCCTG
AAGTCCCTGGTTCTCTCCCCTCAAGCCATAAGTATGACTTGTCTGACATGAATGCTGTCGCTAG
GTTTGTCAAGTGGCAATACTTCGAAGGCGATGTTTCCAATGGCGCGCCTTATCCACCGTGCAGT
GGAGTCCATGTGCGCTCTGTGTGCGTCTTTGGAGTTGGTGACTTGAGCTGGATGCTGCGCAAAC
ACCACTTTTTTGCCAATAAGTTTGACATGGATGTGGATCCCTTTGCCCTCCAGTGTTTGGAAGA
ACATCTGAGGCATAAAGCCCTGGAGACCTTAGAACGCTAAGCACTGTTGGCAGTCCTGGGGAAG
ATAAAGACACACAAGCTGTACCCTCATCTGCTTCCCTTCTCTCCTATCGGGTCCTCCTATTGGG
GCGATGACTTCAAAGTCTTCCTGTCAGGGAAGCTGCGTGGATCCTACAGAACATAGCTACAAGA
GAGATTGATACATTGCGTGCTCTAGAGTAAATGCAAGGACGGAGTTAGGATGGCTGGAGGCTGG
GGAAGATTTTGTGGACAGAGAGGCTCTGGGTAATTGAGAAAGAGGCCAATGAAAAGCGTCAGCC
TTGAGAACTAATCAAAGAACCCAGGTACTTAATCTAAATGAGATTTGATTTGTGCCAAAAGTCG
CTTGAAAACGTTAAGCATAATTTTCTTGACAGGAATAAATTTGTAGCAACAACCAATCACAGAG
ATAGGATTTCTCTTGTATGTTTTTTGGAACAGACGTTTGGTCTTACTCTAACTTATCCTTGTAA
ATAATTTCCTTCCTGCTGTGATTTTGGGTAGGGGGTCTCAGGGAGCTTAAAATATGTTTGGCAT
GAATAGCTCTGTCTTAATTTTCGCTTATAACTACACATACATGTTTCAAAAGCAAGAGGACAGT
TTCTAGTTCCCGACTTCTTTGAGTATTCCTTTATTAAAAAAGAACCAGCTGGGTGTGTCACCTG
TGCCTGTGAAGCAGGGCAGTTGTTTAATCTCGAGTGATATCGGCCAAGCTGGACAACAAAACAA
GAAGTTGTCTCTTTAAAAAGGAGAAGAAGATCAACTCGATTTTACAAATACATAGTTTTTTCCT
TATCTTGTCTTCCCGACTGCTTATACTGTCAAGCTGCACACATGTCGCTGTTTAAGGACCCTAT
ATCTGTGTTTTGGGTCTTCGATGGGAACCAGTCACCTGTAACTAGTGCAAAAAATTAGGGAGGG
TGAAGTAGGCATCCAAGGGGAGATGGGAATCTACTAAGGCTGTTGCTAAGCCCCTGGCACAAGT
TTTGTCCCAAGAAATTAAGGTTTCTGCCTACTGGATCCGATTGTGTCTCATGTGGCCACATTCT
GGCCTTGAGTATTCATGTTATCTGCCCATTGGCTTTTCTTAACCTGCCAGTTTCCTCCTCTCTC
ACGGCCTTGATGAGGGGGAAAGAAGTAGAGAAAAATGCCTGTGTCCACACTAAGTGTTTGAAAA
GAGTTGTGGTATCATAATATGTTTTCACCAAAAGACAAACGGTCTAGGGTTTCTTCAACTCTTT
CTCTTGTCTCTAGTGCAGGGTTGTTTGTTTGTTTTCTCTTAATATTTAGCTAAATCTAAACAGG
ATTCTAGTGAAATGTGAAGACTTGCCATTTGATTTTAAATAAGAATCATTACCACGTACTTTCA
TTTACTTTCATAATCCAGAAGAAAATCATAGTATCAGACAGTTTTAAGGTATTCAGCAGAGAAA
GTGTGTTTTCTGCCTCTTTGCTATGAAGTGTTTTAGGATCAGGAGATAAGCTGGGTTTTGTGTT
GGACCAATAGAAATGCGTTTGCCACAGGGTCACCAGCGATGATGGCGGTGCCATGGACGCCATC
TACACAATCTGGCTTCTGGCTTCTGCTTTCTTTTTAGTTGTAACCAAGATTGTCCAATGGTCCT
TTTAGTAGAAAGGCTTTTACTTATGAAGACAGGGCATCTTTTAAATCTAAAACCAGTGGTACCT
GGTGACATATCATTTGGGTAAGCCGCTGTGACTTCAGCAGATTTTCTTTTTCCATCTTGAAAGT
GCAGGGTTAAAGCAGTAGTCTTGGGATCCAACAAACGGCAACCCCAACCTGGGGTAGCCGGTGG
TCAACACATCCAGCCCGATTTGCTTTATACTCAATGAGCTCTTGAACTTTCCAAAACTGGAAAT
TTTTTTTTTAATTACAAGTACTTTTTTTCTTAAAAAAAAATCAACTATTTGATGTTATTCATCT
AAACACTCTTAATTGTAGTGGTGCTCCATTTCAGTTAAATGGCAAGTTTGAGGATTGTTTATTT
TTATTGTTTGCCCCTCTACAGGAGTAAAACTAGGATTCTAGAATTCCGAGCCTCAAGTCAATGC
TGTGAAGCCTCCTACTTCCTGTTACCTCACCTTTTGTAGCATTGCACTTGTTCAAAGGATGCTG
TAGCGCCCAATGCCTGCCACAGGCTTGTACAGTGTCTGTTTACTGTGACTCAATGGATTTTATT
TTTGGAGCTTTTCAATATGACTTAAAGCAAAAGAAATTCATACGGGTGGGGTAAATAATTCAAA
GAACTAAAAGGGACTTGGAAATGAATACATAAGACTCCAGAAGAGTACAATTGCAGCTCATTTG
GAGAGATAGGCTTTGTTCATGTTGAAGTCATGTTTCTAGTAAACACTAATTTTAATGCTATCCT
TGAGGTTTCTTATAGACATTTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACTGAACCCAGGGCA
AGCGCTCTACGCTGAGCTAAATCCCCAACCCCTTATAGAGAATTTCAGCAATCACATTCACAAA
TAAAATGGGATTCTAGTTACTAAGTCAATCAAGATTATATGTATCATTTGTTAGAAATAAGTTA
ATTTAAAAATATTAGTTTATAGTCAATTGCCTAGGTTCTTCTGATGCTGAGGTTTAAAAAAACA
AAACAAAAAAAGATTTCACTTTGAAACCTGGGAATATTATTATTTCTAACATGTGTTTGTGTCG
TTCATCTAGTACAGTTCATTTAAGTGACTTTATTTCCTCTTCTCATGATTTTAGTTGGAAGAGG
CTGGCTGGGTAGGGTAGACGGAACTGGATGTTTTTAGTTGCTTAAATAATTATTGTCATGAAGT
ATATAATGCAAAACTATTTATGTTTTTGAATGAATTGGTCATATCACCAATAAAATCAGTTGTT
GAGAAACCAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006231147 ⟹ XP_006231209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	224,145,104 - 224,182,307 (-)	NCBI
mRatBN7.2	1	214,718,344 - 214,755,551 (-)	NCBI
Rnor_6.0	1	236,547,729 - 236,585,037 (+)	NCBI
Rnor_5.0	1	243,851,152 - 243,888,286 (+)	NCBI

Sequence:

show sequence

GGTCCTAGGGCGTGGCGCTGGCCCGGAGGTTTGGAGCGCAGAAGGCTGAGCGCGCCAGTATTCG
CTTGGCGATCCGATCCAGCGCTCTTTCATGCGCCCTGCAGGCACAGGCTCCAGACTGTTGGAAA
AGCCTGCTGGGACATGTCATCATCGCTGGATGCCTGGGGCTCGATAGAAACTTGGCAGCACAAT
AGCCCCTCTGAGCAAGTACAGGATGTCACCAGGAATCAGAGCCTCCACAGATTCAGACTTCCTG
TGATTCTAAATGCTCTGTCCTGTGTGGTGCTCTATTGTCCCTCTTACAAACTGGCAACTTATCT
GGCCACAACAGAAGGACACTGGAGGAAACCTCACTGGCGTCCAAGGCCTAGAAGATTGTTCCAC
CACCCCAGGGAGCCTCTGAGTGTTCTTTGAAATGCTGAGAAACTTGTTTCGGAGGAGACTTTTT
TCTTATCCTACAAAATACTACTTCATGGTTCTTGTTCTGTCTCTAATTACCTTCTCTGTTGTAA
GAATTCATCAGAAGCCTGAATTTGTTAGTGTCAGTCACTTGGAGCTTTCTGGAGATGATCCCAA
TAGCAATGTTAATTGCACCAAAGTTTTACAGGGTGACCCAGAAGAAATCCAGAAGGTGAAGCTT
GAGATACTAACAGTGCAATTCAAGAAGCGTCCGAGGCGGACACCGCATGACTATATAAACATGA
CCCGGGACTGCGCCTCCTTCATCAGGACACGCAAATATATTATGGAGCCCCTTACTAAAGAAGA
GGTTGGCTTTCCAATTGCATATTCCATAGTGGTTCATCATAAGATTGACATGCTTGACAGGCTC
CTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATTCACGTGGACAGAAAAGCAGAGGAAT
CCTTTTTAGCCGCGGTGCAGGGCATTGCATCCTGCTTTGATAATGTCTTTGTGGCCAGCCAGTT
GGAGAGTGTTGTATACGCCTCCTGGAGTCGGGTTAAGGCTGACCTCAACTGCATGAAGGACCTG
TACAGAATGAATGCAAACTGGAAGTACTTGATCAATCTTTGTGGTATGGATTTCCCTATTAAAA
CCAACCTGGAAATTGTCAGGAAGCTCAAGTCCTTCACAGGGGAAAACAGCCTGGAAACTGAGAA
GATGCCTCCCAACAAGGAAGAGAGGTGGAAAAAACGATACACGGTTGTGGACGGGAAGCTGACA
AACACTGGAGTTGTCAAGGCGCAGCCTCCACTCAAAACTCCTCTCTTTTCAGGCAGCGCCTATT
TCGTGGTCACTAGGGAATATGTAGGCTATGTGCTGGAAAATAAAAATATTCAAAAGTTCATGGA
ATGGGCACAGGACACATACAGCCCGGATGAGTTCCTCTGGGCCACCATCCAAAGGATCCCTGAA
GTCCCTGGTTCTCTCCCCTCAAGCCATAAGTATGACTTGTCTGACATGAATGCTGTCGCTAGGT
TTGTCAAGTGGCAATACTTCGAAGGCGATGTTTCCAATGGCGCGCCTTATCCACCGTGCAGTGG
AGTCCATGTGCGCTCTGTGTGCGTCTTTGGAGTTGGTGACTTGAGCTGGATGCTGCGCAAACAC
CACTTTTTTGCCAATAAGTTTGACATGGATGTGGATCCCTTTGCCCTCCAGTGTTTGGAAGAAC
ATCTGAGGCATAAAGCCCTGGAGACCTTAGAACGCTAAGCACTGTTGGCAGTCCTGGGGAAGAT
AAAGACACACAAGCTGTACCCTCATCTGCTTCCCTTCTCTCCTATCGGGTCCTCCTATTGGGGC
GATGACTTCAAAGTCTTCCTGTCAGGGAAGCTGCGTGGATCCTACAGAACATAGCTACAAGAGA
GATTGATACATTGCGTGCTCTAGAGTAAATGCAAGGACGGAGTTAGGATGGCTGGAGGCTGGGG
AAGATTTTGTGGACAGAGAGGCTCTGGGTAATTGAGAAAGAGGCCAATGAAAAGCGTCAGCCTT
GAGAACTAATCAAAGAACCCAGGTACTTAATCTAAATGAGATTTGATTTGTGCCAAAAGTCGCT
TGAAAACGTTAAGCATAATTTTCTTGACAGGAATAAATTTGTAGCAACAACCAATCACAGAGAT
AGGATTTCTCTTGTATGTTTTTTGGAACAGACGTTTGGTCTTACTCTAACTTATCCTTGTAAAT
AATTTCCTTCCTGCTGTGATTTTGGGTAGGGGGTCTCAGGGAGCTTAAAATATGTTTGGCATGA
ATAGCTCTGTCTTAATTTTCGCTTATAACTACACATACATGTTTTCAAAAGCAAGAGGACAGTT
TCTAGTTCCCCGACTTCTTTGAGTATTCCTTTATTAAAAAAGAACCAGCTGGGTGTGTCACCTG
TGCCTGTGAAGCAGGGCAGTTGTTTAATCTCGAGTGATATCGGCCAAGCTGGACAACAAAACAA
GAAGTTGTCCTTTAAAAAGGAGAAGAAGATCAACTCGATTTTACAAATACATAGTTTTTTCCTT
ATCTTGTCTTCCCAGACTGCTTATACTGTCAAGCTGCACACATGTCGCTGTTTAAGGACCCTAT
ATCTGTGTTTTGGGTCTTCGATGGGAACCAGTCACCTGTAACTAGTGCAAAAAATTAGGGAGGG
TGAAGTAGGCATCCAAGGGGAGATGGGAATCTACTAAGGCTGTTGCTAAGCCCCTGGCACAAGT
TTTGTCCCAAGAAATTAAGGTTTCTGCCTACTGGATCCGATTGTGTCTCATGTGGCCACATTCT
GGCCTTGAGTATTCATGTTATCTGCCCATTGGCTTTTCTTAACCTGCCAGTTTCCTCCTCTCTC
ACGGCCTTGATGAGGGGGAAAGAAGTAGAGAAAAATGCCTGTGTCCACACTAAGTGTTTGAAAA
GAGTTGTGGTATCATAATATGTTTTCACCAAAAGACAAACGGTCTAGGGTTTCTTCAACTCTTT
CTCTTGTCTCTAGTGCAGGGTTGTTTGTTTGTTTTCTCTTAATATTTAGCTAAATCTAAACAGG
ATTCTAGTGAAATGTGAAGACTTGCCATTTGATTTTAAATAAGAATCATTACCACGTACTTTCA
TTTACTTTCATAATCCAGAAGAAAATCATAGTATCAGACAGTTTTAAGGTATTCAGCAGAGAAA
GTGTGTTTTCTGCCTCAAAGCTATGAAGTGTTTTAGGATCAGGAGATAAGCTGGGTTTTGTGTT
GGACCAATAGAAATGCGTTTGCCACAGGGTCACCAGCGATGATGGCGGTGCAGCTGACGCCATC
TACACAATCTGGCTTCTGCTTTCTTTTTTAGGTTTGTAACCAAGATTTGTCCAATGGTCCTTTT
AGTAGAAAGGCTTTTACTTATGAGACAGGGCATCTTTTAAATCTAAAACCAGTGGTACCTGGTG
ACATATCATTTGGGTAAGCCGCTGTGACTTCAGCAGATTTTCTTTTTCCATCTTGAAAGTGCAG
GGTTAAAGCAGTAGTCTTGGGATCCAACAAACGGCAACCCCAACCTGGGGTAGCCGGTGGTCAA
CACATCCAGCCCGATTTGCTTTATACTCAATGAGCTCTTGAACTTTGCAAAACTGGAAATTTTT
TTTTTAATTACAAGTACTTTTTTTCTTAAAAAAAAATCAACTATTTGATGTTATTCATCTAAAC
ACTCTTAATTGTAGTGGTGCTCCATTTCAGTTAAATGGCAAGTTTGAGGATTGTTTATTTTTAT
TGTTTGCCCCTCTACAGGAGTAAAACTAGGATTCTAGAATTCCAGAGCCTCAAGTCAATGCTGT
GAAGCCTCCTACTTCCTGTTACCTCACCTTTGTAGCATTGCACTTGTTCAAAGGATGCTGTAGC
GCCCAATGCCTGCCACAGGGCTTGTACAGTGTCTGTTTACTGTGACTCAATGGATTTTATTTTT
GGAGCTTTTCAATATGACTTAAAGCAAAAGAAATTCATACGGTGGGGTAAATAATTCAAAGAAC
TAAAAAGGGGACTTGGAAATGAATACATAAGACTCCAGAAGAGTACAATTGCAGCTCATTTGGA
GAGATAGGCTTTGTTCATGTTGAAGTCATGTTTCTAGTAAACACTAATTTTAATGCTATCCTTG
AGGTTTCTTATAGACATTTTTTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACTGAACCCAGGGC
AAGCGCTCTACCGCTGAGCTAAATCCCCAACCCCTTATAGAGAATTTTCAGCAATCACATTCAC
AAATAAAATGGGATTCTAGTTACTAAGTCAATCAAGATTATATGTATCATTTGTTAGAAATAAG
TTAATTTAAAAATATTAGTTTATAGTCAATTGCCTAGGTTCTTCTGATGCTGAGGTTTAAAAAA
ACAAAACAAAAAAAGATTTCACTTTGAAACCTGGGAATATTATTATTTCTAAACATGTGTTTGT
GTCGTTCATCTAGTACAGTTCATTTAAGTGACTTTATTTCCTCTTCTCATGATTTTAGTTGGAA
GAGGCTGGCTGGGTAGGGTAGACGGAACTGGATGTTTTTAGTTGCTTAAATAATTATTGTCATG
AAGTATATAATGCAAAACTATTTATGTTTTTGAATGAATTGGTCATATCACCAATAAAATCAGT
TGTTGAGAAACCAA

hide sequence

RefSeq Acc Id:

XM_006231150 ⟹ XP_006231212

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	224,145,104 - 224,181,477 (-)	NCBI
mRatBN7.2	1	214,718,344 - 214,754,713 (-)	NCBI
Rnor_6.0	1	236,548,498 - 236,585,037 (+)	NCBI
Rnor_5.0	1	243,851,152 - 243,888,286 (+)	NCBI

Sequence:

show sequence

AGATCCTCCTGCCTCTGTCTACCGAGGTTAAAGATGAGCGCCACCACACCTCAAGGGGGAAGAG
TCCGTCTGATGCTCACACACGCTCCCAGTCACAGTTCTTTCAGTGCAGAATAAAAAGTGTGTCC
CCTCCCCCACGCAACCGAGGAGACTCCTTCTGTAGAGGATCCGAGCTTGGCTCTGCAAAAACCA
AGTGTGGGATTGACTGTTGGAAAAGCCTGCTGGGACATGTCATCATCGCTGGATGCCTGGGGCT
CGATAGAAACTTGGCAGCACAATAGCCCCTCTGAGCAAGTACAGGATGTCACCAGGAATCAGAG
CCTCCACAGATTCAGACTTCCTGTGATTCTAAATGCTCTGTCCTGTGTGGTGCTCTATTGTCCC
TCTTACAAACTGGCAACTTATCTGGCCACAACAGAAGGACACTGGAGGAAACCTCACTGGCGTC
CAAGGCCTAGAAGATTGTTCCACCACCCCAGGGAGCCTCTGAGTGTTCTTTGAAATGCTGAGAA
ACTTGTTTCGGAGGAGACTTTTTTCTTATCCTACAAAATACTACTTCATGGTTCTTGTTCTGTC
TCTAATTACCTTCTCTGTTGTAAGAATTCATCAGAAGCCTGAATTTGTTAGTGTCAGTCACTTG
GAGCTTTCTGGAGATGATCCCAATAGCAATGTTAATTGCACCAAAGTTTTACAGGGTGACCCAG
AAGAAATCCAGAAGGTGAAGCTTGAGATACTAACAGTGCAATTCAAGAAGCGTCCGAGGCGGAC
ACCGCATGACTATATAAACATGACCCGGGACTGCGCCTCCTTCATCAGGACACGCAAATATATT
ATGGAGCCCCTTACTAAAGAAGAGGTTGGCTTTCCAATTGCATATTCCATAGTGGTTCATCATA
AGATTGACATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATTCA
CGTGGACAGAAAAGCAGAGGAATCCTTTTTAGCCGCGGTGCAGGGCATTGCATCCTGCTTTGAT
AATGTCTTTGTGGCCAGCCAGTTGGAGAGTGTTGTATACGCCTCCTGGAGTCGGGTTAAGGCTG
ACCTCAACTGCATGAAGGACCTGTACAGAATGAATGCAAACTGGAAGTACTTGATCAATCTTTG
TGGTATGGATTTCCCTATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAGTCCTTCACAGGG
GAAAACAGCCTGGAAACTGAGAAGATGCCTCCCAACAAGGAAGAGAGGTGGAAAAAACGATACA
CGGTTGTGGACGGGAAGCTGACAAACACTGGAGTTGTCAAGGCGCAGCCTCCACTCAAAACTCC
TCTCTTTTCAGGCAGCGCCTATTTCGTGGTCACTAGGGAATATGTAGGCTATGTGCTGGAAAAT
AAAAATATTCAAAAGTTCATGGAATGGGCACAGGACACATACAGCCCGGATGAGTTCCTCTGGG
CCACCATCCAAAGGATCCCTGAAGTCCCTGGTTCTCTCCCCTCAAGCCATAAGTATGACTTGTC
TGACATGAATGCTGTCGCTAGGTTTGTCAAGTGGCAATACTTCGAAGGCGATGTTTCCAATGGC
GCGCCTTATCCACCGTGCAGTGGAGTCCATGTGCGCTCTGTGTGCGTCTTTGGAGTTGGTGACT
TGAGCTGGATGCTGCGCAAACACCACTTTTTTGCCAATAAGTTTGACATGGATGTGGATCCCTT
TGCCCTCCAGTGTTTGGAAGAACATCTGAGGCATAAAGCCCTGGAGACCTTAGAACGCTAAGCA
CTGTTGGCAGTCCTGGGGAAGATAAAGACACACAAGCTGTACCCTCATCTGCTTCCCTTCTCTC
CTATCGGGTCCTCCTATTGGGGCGATGACTTCAAAGTCTTCCTGTCAGGGAAGCTGCGTGGATC
CTACAGAACATAGCTACAAGAGAGATTGATACATTGCGTGCTCTAGAGTAAATGCAAGGACGGA
GTTAGGATGGCTGGAGGCTGGGGAAGATTTTGTGGACAGAGAGGCTCTGGGTAATTGAGAAAGA
GGCCAATGAAAAGCGTCAGCCTTGAGAACTAATCAAAGAACCCAGGTACTTAATCTAAATGAGA
TTTGATTTGTGCCAAAAGTCGCTTGAAAACGTTAAGCATAATTTTCTTGACAGGAATAAATTTG
TAGCAACAACCAATCACAGAGATAGGATTTCTCTTGTATGTTTTTTGGAACAGACGTTTGGTCT
TACTCTAACTTATCCTTGTAAATAATTTCCTTCCTGCTGTGATTTTGGGTAGGGGGTCTCAGGG
AGCTTAAAATATGTTTGGCATGAATAGCTCTGTCTTAATTTTCGCTTATAACTACACATACATG
TTTTCAAAAGCAAGAGGACAGTTTCTAGTTCCCCGACTTCTTTGAGTATTCCTTTATTAAAAAA
GAACCAGCTGGGTGTGTCACCTGTGCCTGTGAAGCAGGGCAGTTGTTTAATCTCGAGTGATATC
GGCCAAGCTGGACAACAAAACAAGAAGTTGTCCTTTAAAAAGGAGAAGAAGATCAACTCGATTT
TACAAATACATAGTTTTTTCCTTATCTTGTCTTCCCAGACTGCTTATACTGTCAAGCTGCACAC
ATGTCGCTGTTTAAGGACCCTATATCTGTGTTTTGGGTCTTCGATGGGAACCAGTCACCTGTAA
CTAGTGCAAAAAATTAGGGAGGGTGAAGTAGGCATCCAAGGGGAGATGGGAATCTACTAAGGCT
GTTGCTAAGCCCCTGGCACAAGTTTTGTCCCAAGAAATTAAGGTTTCTGCCTACTGGATCCGAT
TGTGTCTCATGTGGCCACATTCTGGCCTTGAGTATTCATGTTATCTGCCCATTGGCTTTTCTTA
ACCTGCCAGTTTCCTCCTCTCTCACGGCCTTGATGAGGGGGAAAGAAGTAGAGAAAAATGCCTG
TGTCCACACTAAGTGTTTGAAAAGAGTTGTGGTATCATAATATGTTTTCACCAAAAGACAAACG
GTCTAGGGTTTCTTCAACTCTTTCTCTTGTCTCTAGTGCAGGGTTGTTTGTTTGTTTTCTCTTA
ATATTTAGCTAAATCTAAACAGGATTCTAGTGAAATGTGAAGACTTGCCATTTGATTTTAAATA
AGAATCATTACCACGTACTTTCATTTACTTTCATAATCCAGAAGAAAATCATAGTATCAGACAG
TTTTAAGGTATTCAGCAGAGAAAGTGTGTTTTCTGCCTCAAAGCTATGAAGTGTTTTAGGATCA
GGAGATAAGCTGGGTTTTGTGTTGGACCAATAGAAATGCGTTTGCCACAGGGTCACCAGCGATG
ATGGCGGTGCAGCTGACGCCATCTACACAATCTGGCTTCTGCTTTCTTTTTTAGGTTTGTAACC
AAGATTTGTCCAATGGTCCTTTTAGTAGAAAGGCTTTTACTTATGAGACAGGGCATCTTTTAAA
TCTAAAACCAGTGGTACCTGGTGACATATCATTTGGGTAAGCCGCTGTGACTTCAGCAGATTTT
CTTTTTCCATCTTGAAAGTGCAGGGTTAAAGCAGTAGTCTTGGGATCCAACAAACGGCAACCCC
AACCTGGGGTAGCCGGTGGTCAACACATCCAGCCCGATTTGCTTTATACTCAATGAGCTCTTGA
ACTTTGCAAAACTGGAAATTTTTTTTTTAATTACAAGTACTTTTTTTCTTAAAAAAAAATCAAC
TATTTGATGTTATTCATCTAAACACTCTTAATTGTAGTGGTGCTCCATTTCAGTTAAATGGCAA
GTTTGAGGATTGTTTATTTTTATTGTTTGCCCCTCTACAGGAGTAAAACTAGGATTCTAGAATT
CCAGAGCCTCAAGTCAATGCTGTGAAGCCTCCTACTTCCTGTTACCTCACCTTTGTAGCATTGC
ACTTGTTCAAAGGATGCTGTAGCGCCCAATGCCTGCCACAGGGCTTGTACAGTGTCTGTTTACT
GTGACTCAATGGATTTTATTTTTGGAGCTTTTCAATATGACTTAAAGCAAAAGAAATTCATACG
GTGGGGTAAATAATTCAAAGAACTAAAAAGGGGACTTGGAAATGAATACATAAGACTCCAGAAG
AGTACAATTGCAGCTCATTTGGAGAGATAGGCTTTGTTCATGTTGAAGTCATGTTTCTAGTAAA
CACTAATTTTAATGCTATCCTTGAGGTTTCTTATAGACATTTTTTTTTTTTTTTTTTTTTTTTG
GAGCTGGGGACTGAACCCAGGGCAAGCGCTCTACCGCTGAGCTAAATCCCCAACCCCTTATAGA
GAATTTTCAGCAATCACATTCACAAATAAAATGGGATTCTAGTTACTAAGTCAATCAAGATTAT
ATGTATCATTTGTTAGAAATAAGTTAATTTAAAAATATTAGTTTATAGTCAATTGCCTAGGTTC
TTCTGATGCTGAGGTTTAAAAAAACAAAACAAAAAAAGATTTCACTTTGAAACCTGGGAATATT
ATTATTTCTAAACATGTGTTTGTGTCGTTCATCTAGTACAGTTCATTTAAGTGACTTTATTTCC
TCTTCTCATGATTTTAGTTGGAAGAGGCTGGCTGGGTAGGGTAGACGGAACTGGATGTTTTTAG
TTGCTTAAATAATTATTGTCATGAAGTATATAATGCAAAACTATTTATGTTTTTGAATGAATTG
GTCATATCACCAATAAAATCAGTTGTTGAGAAACCAA

hide sequence

RefSeq Acc Id:

XM_039089295 ⟹ XP_038945223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	224,145,104 - 224,182,293 (-)	NCBI
mRatBN7.2	1	214,718,344 - 214,755,536 (-)	NCBI

RefSeq Acc Id:

XM_039089301 ⟹ XP_038945229

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	224,145,104 - 224,182,496 (-)	NCBI
mRatBN7.2	1	214,718,344 - 214,755,735 (-)	NCBI

RefSeq Acc Id:

XM_063272669 ⟹ XP_063128739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	224,145,104 - 224,182,282 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001430487	(Get FASTA)	NCBI Sequence Viewer
	NP_001430488	(Get FASTA)	NCBI Sequence Viewer
	NP_071612	(Get FASTA)	NCBI Sequence Viewer
	XP_006231209	(Get FASTA)	NCBI Sequence Viewer
	XP_006231212	(Get FASTA)	NCBI Sequence Viewer
	XP_038945223	(Get FASTA)	NCBI Sequence Viewer
	XP_038945229	(Get FASTA)	NCBI Sequence Viewer
	XP_063128739	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB35697	(Get FASTA)	NCBI Sequence Viewer
	EDM12976	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000080877
	ENSRNOP00000080877.1
	ENSRNOP00000083711
	ENSRNOP00000083711.1
	ENSRNOP00000085251.1
	ENSRNOP00000095789
	ENSRNOP00000095789.1
	ENSRNOP00000098683.1
	ENSRNOP00000100925.1
	ENSRNOP00000109845.1
	ENSRNOP00000112535.1
	ENSRNOP00000112691.1

RefSeq Acc Id:

NP_071612 ⟸ NM_022276

- UniProtKB:

Q64165 (UniProtKB/TrEMBL), A0A8I5ZR94 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLRNLFRRRLFSYPTKYYFMVLVLSLITFSVVRIHQKPEFVSVSHLELSGDDPNSNVNCTKVLQ
GDPEEIQKVKLEILTVQFKKRPRRTPHDYINMTRDCASFIRTRKYIMEPLTKEEVGFPIAYSIV
VHHKIDMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWSR
VKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKSFTGENSLETEKMPPNKEERWK
KRYTVVDGKLTNTGVVKAQPPLKTPLFSGSAYFVVTREYVGYVLENKNIQKFMEWAQDTYSPDE
FLWATIQRIPEVPGSLPSSHKYDLSDMNAVARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFG
VGDLSWMLRKHHFFANKFDMDVDPFALQCLEEHLRHKALETLER

hide sequence

RefSeq Acc Id:	XP_006231209 ⟸ XM_006231147
- Peptide Label:	isoform X1
- UniProtKB:	Q64165 (UniProtKB/TrEMBL), A0A8I5ZR94 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLRNLFRRRLFSYPTKYYFMVLVLSLITFSVVRIHQKPEFVSVSHLELSGDDPNSNVNCTKVLQ GDPEEIQKVKLEILTVQFKKRPRRTPHDYINMTRDCASFIRTRKYIMEPLTKEEVGFPIAYSIV VHHKIDMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWSR VKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKSFTGENSLETEKMPPNKEERWK KRYTVVDGKLTNTGVVKAQPPLKTPLFSGSAYFVVTREYVGYVLENKNIQKFMEWAQDTYSPDE FLWATIQRIPEVPGSLPSSHKYDLSDMNAVARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFG VGDLSWMLRKHHFFANKFDMDVDPFALQCLEEHLRHKALETLER hide sequence

RefSeq Acc Id:	XP_006231212 ⟸ XM_006231150
- Peptide Label:	isoform X1
- UniProtKB:	Q64165 (UniProtKB/TrEMBL), A0A8I5ZR94 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLRNLFRRRLFSYPTKYYFMVLVLSLITFSVVRIHQKPEFVSVSHLELSGDDPNSNVNCTKVLQ GDPEEIQKVKLEILTVQFKKRPRRTPHDYINMTRDCASFIRTRKYIMEPLTKEEVGFPIAYSIV VHHKIDMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWSR VKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKSFTGENSLETEKMPPNKEERWK KRYTVVDGKLTNTGVVKAQPPLKTPLFSGSAYFVVTREYVGYVLENKNIQKFMEWAQDTYSPDE FLWATIQRIPEVPGSLPSSHKYDLSDMNAVARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFG VGDLSWMLRKHHFFANKFDMDVDPFALQCLEEHLRHKALETLER hide sequence

Ensembl Acc Id:

ENSRNOP00000066013 ⟸ ENSRNOT00000074939

RefSeq Acc Id:	XP_038945229 ⟸ XM_039089301
- Peptide Label:	isoform X1
- UniProtKB:	Q64165 (UniProtKB/TrEMBL), A0A8I5ZR94 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945223 ⟸ XM_039089295
- Peptide Label:	isoform X1
- UniProtKB:	Q64165 (UniProtKB/TrEMBL), A0A8I5ZR94 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000095789 ⟸ ENSRNOT00000118591

Ensembl Acc Id:

ENSRNOP00000085251 ⟸ ENSRNOT00000094573

Ensembl Acc Id:

ENSRNOP00000083711 ⟸ ENSRNOT00000108297

Ensembl Acc Id:

ENSRNOP00000080877 ⟸ ENSRNOT00000119573

RefSeq Acc Id:	XP_063128739 ⟸ XM_063272669
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZR94 (UniProtKB/TrEMBL), Q64165 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000109845 ⟸ ENSRNOT00000159933

Ensembl Acc Id:

ENSRNOP00000112691 ⟸ ENSRNOT00000140590

Ensembl Acc Id:

ENSRNOP00000112535 ⟸ ENSRNOT00000172585

Ensembl Acc Id:

ENSRNOP00000098683 ⟸ ENSRNOT00000137924

Ensembl Acc Id:

ENSRNOP00000100925 ⟸ ENSRNOT00000167113

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q64165-F1-model_v2	AlphaFold	Q64165	1-428	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621370	AgrOrtholog
BioCyc Gene	G2FUF-56214	BioCyc
BioCyc Pathway	PWY-7433 [mucin core 1 and core 2 O-glycosylation]	BioCyc
BioCyc Pathway Image	PWY-7433	BioCyc
Ensembl Genes	ENSRNOG00000050534	Ensembl
	ENSRNOG00000062686	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000094573.2	UniProtKB/TrEMBL
	ENSRNOT00000108297	ENTREZGENE
	ENSRNOT00000108297.2	UniProtKB/TrEMBL
	ENSRNOT00000118591	ENTREZGENE
	ENSRNOT00000118591.2	UniProtKB/TrEMBL
	ENSRNOT00000119573	ENTREZGENE
	ENSRNOT00000119573.2	UniProtKB/TrEMBL
	ENSRNOT00000137924.1	UniProtKB/TrEMBL
	ENSRNOT00000140590.1	UniProtKB/TrEMBL
	ENSRNOT00000159933.1	UniProtKB/TrEMBL
	ENSRNOT00000167113.1	UniProtKB/TrEMBL
	ENSRNOT00000172585.1	UniProtKB/TrEMBL
InterPro	Glyco_trans_14	UniProtKB/TrEMBL
KEGG Report	rno:64043	UniProtKB/TrEMBL
NCBI Gene	64043	ENTREZGENE
PANTHER	BETA-1,3-GALACTOSYL-O-GLYCOSYL-GLYCOPROTEIN BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE	UniProtKB/TrEMBL
	GLYCOSYLTRANSFERASE 14 FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	Branch	UniProtKB/TrEMBL
PhenoGen	Gcnt1	PhenoGen
RatGTEx	ENSRNOG00000050534	RatGTEx
	ENSRNOG00000062686	RatGTEx
UniProt	A0A8I5ZR94	ENTREZGENE, UniProtKB/TrEMBL
	Q64165	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-10-30	Gcnt1	glucosaminyl (N-acetyl) transferase 1	Gcnt1	glucosaminyl (N-acetyl) transferase 1, core 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-08-02	Gcnt1	glucosaminyl (N-acetyl) transferase 1, core 2	Gcnt1	glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-03-09	Gcnt1	glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	Gcnt1	glucosaminyl (N-acetyl) transferase 1, core 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Gcnt1	glucosaminyl (N-acetyl) transferase 1, core 2		enzymatic glycosylation-regulating gene	Name updated	1299863	APPROVED
2002-08-07	Gcnt1	enzymatic glycosylation-regulating gene			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_homology	85 and 92% amino acid identity to human and mouse homologs	632804
gene_regulation	induced by diabetes and hyperglycemia	632804

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways