Psmb1 (proteasome 20S subunit beta 1) - Rat Genome Database

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Gene: Psmb1 (proteasome 20S subunit beta 1) Rattus norvegicus
Analyze
Symbol: Psmb1
Name: proteasome 20S subunit beta 1
RGD ID: 621092
Description: Predicted to be involved in proteolysis involved in protein catabolic process. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PSMB1 (proteasome 20S subunit beta 1); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,3-dinitrobenzene; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: beta-6; macropain subunit C5; multicatalytic endopeptidase complex subunit C5; proteasome (prosome, macropain) subunit, beta type 1; proteasome beta 1 subunit; proteasome component C5; proteasome gamma chain; proteasome subunit beta 1; proteasome subunit beta type-1; proteasome subunit beta-6; proteasome subunit RC5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,115,770 - 65,136,516 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl165,114,724 - 65,136,640 (-)EnsemblGRCr8
mRatBN7.2156,442,432 - 56,463,544 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl156,420,618 - 56,463,560 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx161,293,207 - 61,311,018 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0169,956,748 - 69,974,559 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0163,203,175 - 63,220,987 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0157,470,878 - 57,491,359 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl157,470,632 - 57,489,727 (-)Ensemblrn6Rnor6.0
Rnor_5.0158,399,237 - 58,419,917 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4154,369,775 - 54,388,816 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,648,620 - 52,666,985 (-)NCBICelera
RGSC_v3.1154,372,719 - 54,391,761 (-)NCBI
Cytogenetic Map1q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
amiodarone  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzbromarone  (EXP)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
clofibrate  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
disodium selenite  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
furfural  (ISO)
genistein  (EXP)
gentamycin  (EXP)
hyaluronic acid  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (EXP,ISO)
indometacin  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
L-ethionine  (EXP)
leflunomide  (EXP)
lithium atom  (EXP)
lithium hydride  (EXP)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methoxychlor  (EXP)
methylparaben  (ISO)
N-nitrosodimethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
omeprazole  (EXP)
paclitaxel  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
PhIP  (EXP)
phlorizin  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
stattic  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
theophylline  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP,ISO)
vincaleukoblastine  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8. An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Sun C, etal., Science. 2023 May 26;380(6647):eadf2018. doi: 10.1126/science.adf2018. Epub 2023 May 26.
9. cDNA cloning and sequencing of component C5 of proteasomes from rat hepatoma cells. Tamura T, etal., FEBS Lett 1990 May 7;264(1):91-4.
Additional References at PubMed
PMID:2335242   PMID:16857966   PMID:17323924   PMID:17540904   PMID:19056867   PMID:20458337   PMID:20498273   PMID:21630459   PMID:22793692   PMID:23376485   PMID:31505169  


Genomics

Comparative Map Data
Psmb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,115,770 - 65,136,516 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl165,114,724 - 65,136,640 (-)EnsemblGRCr8
mRatBN7.2156,442,432 - 56,463,544 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl156,420,618 - 56,463,560 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx161,293,207 - 61,311,018 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0169,956,748 - 69,974,559 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0163,203,175 - 63,220,987 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0157,470,878 - 57,491,359 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl157,470,632 - 57,489,727 (-)Ensemblrn6Rnor6.0
Rnor_5.0158,399,237 - 58,419,917 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4154,369,775 - 54,388,816 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,648,620 - 52,666,985 (-)NCBICelera
RGSC_v3.1154,372,719 - 54,391,761 (-)NCBI
Cytogenetic Map1q12NCBI
PSMB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386170,535,120 - 170,553,307 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6170,535,116 - 170,553,327 (-)Ensemblhg38GRCh38
GRCh376170,844,208 - 170,862,395 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366170,686,134 - 170,704,312 (-)NCBIBuild 36Build 36hg18NCBI36
Build 346170,761,840 - 170,780,019NCBI
Celera6171,639,464 - 171,657,679 (-)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6168,349,261 - 168,367,473 (-)NCBIHuRef
CHM1_16171,105,483 - 171,123,692 (-)NCBICHM1_1
T2T-CHM13v2.06171,908,679 - 171,926,858 (-)NCBIT2T-CHM13v2.0
Psmb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,695,983 - 15,718,538 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,695,283 - 15,720,013 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381715,475,721 - 15,498,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1715,475,021 - 15,499,751 (-)Ensemblmm10GRCm38
MGSCv371715,612,685 - 15,635,240 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361715,180,922 - 15,203,243 (-)NCBIMGSCv36mm8
Celera1716,263,619 - 16,283,553 (-)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
Psmb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,286,835 - 3,304,931 (+)Ensembl
ChiLan1.0NW_0049554113,285,610 - 3,304,210 (+)NCBIChiLan1.0ChiLan1.0
PSMB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25190,812,047 - 190,831,109 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16188,713,683 - 188,732,729 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06168,695,047 - 168,713,257 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16173,781,040 - 173,799,243 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6173,781,040 - 173,799,342 (-)EnsemblpanPan2panpan1.1
PSMB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11272,440,224 - 72,456,304 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1272,440,224 - 72,456,284 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1272,202,460 - 72,218,544 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01273,425,690 - 73,441,776 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1273,425,690 - 73,441,754 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11272,698,433 - 72,714,512 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01272,520,615 - 72,536,698 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01272,911,637 - 72,927,722 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Psmb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946151,224,293 - 151,246,522 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493709866,832 - 81,708 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493709867,298 - 80,019 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,676 - 40,032 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1123,827 - 40,033 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PSMB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,682,501 - 97,701,339 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1397,682,369 - 97,701,799 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604069,680,366 - 69,699,217 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248506,337,094 - 6,357,997 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248506,339,918 - 6,357,925 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Psmb1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v114496,850 - 514,118 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Psmb1
319 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:50
Interacting mature miRNAs:53
Transcripts:ENSRNOT00000002037
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat

Markers in Region
RH136917  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2156,442,566 - 56,442,776 (+)MAPPERmRatBN7.2
Rnor_6.0157,470,765 - 57,470,974NCBIRnor6.0
Rnor_5.0158,399,124 - 58,399,333UniSTSRnor5.0
RGSC_v3.4154,369,661 - 54,369,870UniSTSRGSC3.4
Celera152,648,506 - 52,648,715UniSTS
RH 3.4 Map1672.2UniSTS
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X52783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000002037   ⟹   ENSRNOP00000002037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl156,442,432 - 56,461,686 (-)Ensembl
Rnor_6.0 Ensembl157,470,632 - 57,489,727 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093808   ⟹   ENSRNOP00000085774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,115,518 - 65,136,640 (-)Ensembl
mRatBN7.2 Ensembl156,420,618 - 56,463,560 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098880   ⟹   ENSRNOP00000080225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,117,080 - 65,136,424 (-)Ensembl
mRatBN7.2 Ensembl156,443,990 - 56,463,297 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103788   ⟹   ENSRNOP00000077882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,114,724 - 65,136,424 (-)Ensembl
mRatBN7.2 Ensembl156,442,429 - 56,463,297 (-)Ensembl
RefSeq Acc Id: NM_053590   ⟹   NP_446042
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,115,771 - 65,134,770 (-)NCBI
mRatBN7.2156,442,681 - 56,461,680 (-)NCBI
Rnor_6.0157,470,879 - 57,489,705 (-)NCBI
Rnor_5.0158,399,237 - 58,419,917 (-)NCBI
RGSC_v3.4154,369,775 - 54,388,816 (-)RGD
Celera152,648,620 - 52,666,985 (-)RGD
Sequence:
RefSeq Acc Id: XM_039093141   ⟹   XP_038949069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,115,770 - 65,136,516 (-)NCBI
mRatBN7.2156,442,432 - 56,463,544 (-)NCBI
RefSeq Acc Id: XM_039093143   ⟹   XP_038949071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,115,770 - 65,132,835 (-)NCBI
mRatBN7.2156,442,432 - 56,459,918 (-)NCBI
RefSeq Acc Id: XM_063276002   ⟹   XP_063132072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,115,770 - 65,135,543 (-)NCBI
RefSeq Acc Id: NP_446042   ⟸   NM_053590
- Peptide Label: precursor
- UniProtKB: P18421 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002037   ⟸   ENSRNOT00000002037
RefSeq Acc Id: XP_038949069   ⟸   XM_039093141
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZZZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949071   ⟸   XM_039093143
- Peptide Label: isoform X3
- UniProtKB: A6KB45 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080225   ⟸   ENSRNOT00000098880
Ensembl Acc Id: ENSRNOP00000085774   ⟸   ENSRNOT00000093808
Ensembl Acc Id: ENSRNOP00000077882   ⟸   ENSRNOT00000103788
RefSeq Acc Id: XP_063132072   ⟸   XM_063276002
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y6U8 (UniProtKB/TrEMBL),   Q6PDW4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P18421-F1-model_v2 AlphaFold P18421 1-240 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689645
Promoter ID:EPDNEW_R169
Type:initiation region
Name:Psmb1_1
Description:proteasome subunit beta 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0157,489,720 - 57,489,780EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621092 AgrOrtholog
BioCyc Gene G2FUF-61310 BioCyc
Ensembl Genes ENSRNOG00000001488 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000093808 ENTREZGENE
Gene3D-CATH 3.60.20.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6922317 IMAGE-MGC_LOAD
InterPro Ntn_hydrolases_N UniProtKB/Swiss-Prot
  Proteasome_bsu_CS UniProtKB/Swiss-Prot
  Proteasome_sua/b UniProtKB/Swiss-Prot
  Proteasome_suB-type UniProtKB/Swiss-Prot
KEGG Report rno:94198 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72741 IMAGE-MGC_LOAD
NCBI Gene 94198 ENTREZGENE
PANTHER METALLOPROTEASE TLDD UniProtKB/Swiss-Prot
  PROTEASOME SUBUNIT BETA TYPE-1 UniProtKB/Swiss-Prot
Pfam Proteasome UniProtKB/Swiss-Prot
PhenoGen Psmb1 PhenoGen
PROSITE PROTEASOME_BETA_1 UniProtKB/Swiss-Prot
  PROTEASOME_BETA_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001488 RatGTEx
Superfamily-SCOP SSF56235 UniProtKB/Swiss-Prot
UniProt A0A8I5Y6U8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G498_RAT UniProtKB/TrEMBL
  A6KB45 ENTREZGENE, UniProtKB/TrEMBL
  P18421 ENTREZGENE, UniProtKB/Swiss-Prot
  Q6PDW4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Psmb1  proteasome 20S subunit beta 1  Psmb1  proteasome subunit beta 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-08-19 Psmb1  proteasome subunit beta 1  Psmb1  proteasome (prosome, macropain) subunit, beta type 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Psmb1  proteasome (prosome, macropain) subunit, beta type 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Psmb1  proteasome (prosome, macropain) subunit, beta type 1      Symbol and Name status set to provisional 70820 PROVISIONAL