Qtrt1 (queuine tRNA-ribosyltransferase catalytic subunit 1) - Rat Genome Database

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Gene: Qtrt1 (queuine tRNA-ribosyltransferase catalytic subunit 1) Rattus norvegicus
Analyze
Symbol: Qtrt1
Name: queuine tRNA-ribosyltransferase catalytic subunit 1
RGD ID: 620996
Description: Predicted to enable protein heterodimerization activity; protein homodimerization activity; and tRNA-guanosine(34) queuine transglycosylase activity. Predicted to be involved in tRNA wobble guanine modification. Predicted to act upstream of or within tRNA modification. Predicted to be located in cytoplasmic side of mitochondrial outer membrane and nucleus. Predicted to be part of tRNA-guanine transglycosylase complex. Orthologous to human QTRT1 (queuine tRNA-ribosyltransferase catalytic subunit 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: guanine insertion enzyme; queuine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1; queuine tRNA-ribosyltransferase catalytic subunit; Tgt; Tgut; tRNA-guanine transglycosylase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,239,993 - 28,249,983 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl828,242,472 - 28,250,398 (+)EnsemblGRCr8
mRatBN7.2819,965,801 - 19,973,843 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,966,336 - 19,973,837 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx823,998,272 - 24,005,546 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,296,109 - 22,303,383 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,196,232 - 20,203,503 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,447,057 - 22,454,328 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,446,661 - 22,454,439 (+)Ensemblrn6Rnor6.0
Rnor_5.0822,501,169 - 22,508,440 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4820,515,248 - 20,522,519 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera821,357,791 - 21,365,062 (+)NCBICelera
RGSC_v3.1820,515,261 - 20,522,225 (+)NCBI
Cytogenetic Map8q13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Transfer ribonucleic acid guanine transglycosylase isolated from rat liver. Shindo-Okada N, etal., Biochemistry 1980 Jan 22;19(2):395-400.
Additional References at PubMed
PMID:12477932   PMID:19414587   PMID:20354154  


Genomics

Comparative Map Data
Qtrt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,239,993 - 28,249,983 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl828,242,472 - 28,250,398 (+)EnsemblGRCr8
mRatBN7.2819,965,801 - 19,973,843 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,966,336 - 19,973,837 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx823,998,272 - 24,005,546 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,296,109 - 22,303,383 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,196,232 - 20,203,503 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,447,057 - 22,454,328 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,446,661 - 22,454,439 (+)Ensemblrn6Rnor6.0
Rnor_5.0822,501,169 - 22,508,440 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4820,515,248 - 20,522,519 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera821,357,791 - 21,365,062 (+)NCBICelera
RGSC_v3.1820,515,261 - 20,522,225 (+)NCBI
Cytogenetic Map8q13NCBI
QTRT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,701,439 - 10,713,365 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,701,430 - 10,713,437 (+)Ensemblhg38GRCh38
GRCh371910,812,115 - 10,824,041 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,673,131 - 10,685,040 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341910,673,130 - 10,685,040NCBI
Celera1910,706,867 - 10,718,794 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,389,232 - 10,401,116 (+)NCBIHuRef
CHM1_11910,813,359 - 10,825,254 (+)NCBICHM1_1
T2T-CHM13v2.01910,827,905 - 10,839,826 (+)NCBIT2T-CHM13v2.0
Qtrt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,323,096 - 21,331,575 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,323,133 - 21,331,570 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38921,411,801 - 21,420,279 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,411,837 - 21,420,274 (+)Ensemblmm10GRCm38
MGSCv37921,216,281 - 21,224,723 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36921,162,305 - 21,170,590 (+)NCBIMGSCv36mm8
Celera918,680,513 - 18,688,894 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.79NCBI
Qtrt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,851,995 - 1,857,527 (+)Ensembl
ChiLan1.0NW_0049554951,851,861 - 1,857,599 (+)NCBIChiLan1.0ChiLan1.0
QTRT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,622,039 - 15,633,941 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,620,632 - 14,636,228 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,255,479 - 10,267,367 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,916,336 - 10,928,899 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,916,330 - 10,928,899 (+)EnsemblpanPan2panpan1.1
QTRT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,489,550 - 50,497,224 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,489,598 - 50,497,165 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2050,361,375 - 50,369,868 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02051,011,297 - 51,019,784 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,919,081 - 51,019,741 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,219,839 - 50,228,333 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,647,166 - 50,655,663 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,888,209 - 50,896,703 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Qtrt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,400,754 - 209,408,395 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936659946,142 - 956,442 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936659946,338 - 953,952 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
QTRT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,450,808 - 69,471,487 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1269,450,792 - 69,471,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2269,835,087 - 69,855,936 (+)NCBISscrofa10.2Sscrofa10.2susScr3
QTRT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,704,002 - 9,709,990 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,704,037 - 9,710,071 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607410,239,693 - 10,266,939 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Qtrt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,719,456 - 2,725,517 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248282,719,810 - 2,724,521 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Qtrt1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1817,684,108 - 17,691,886 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Qtrt1
85 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:60
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000010030
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8132882639Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat

Markers in Region
RH141799  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2819,973,628 - 19,973,815 (+)MAPPERmRatBN7.2
Rnor_6.0822,454,119 - 22,454,305NCBIRnor6.0
Rnor_5.0822,508,231 - 22,508,417UniSTSRnor5.0
RGSC_v3.4820,522,310 - 20,522,496UniSTSRGSC3.4
Celera821,364,853 - 21,365,039UniSTS
RH 3.4 Map8181.1UniSTS
Cytogenetic Map8q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 91 59 6 355 191 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000010030   ⟹   ENSRNOP00000010030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl828,242,472 - 28,250,398 (+)Ensembl
mRatBN7.2 Ensembl819,966,336 - 19,973,837 (+)Ensembl
Rnor_6.0 Ensembl822,446,661 - 22,454,439 (+)Ensembl
RefSeq Acc Id: NM_022250   ⟹   NP_071586
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,242,707 - 28,249,978 (+)NCBI
mRatBN7.2819,966,567 - 19,973,838 (+)NCBI
Rnor_6.0822,447,057 - 22,454,328 (+)NCBI
Rnor_5.0822,501,169 - 22,508,440 (+)NCBI
RGSC_v3.4820,515,248 - 20,522,519 (+)RGD
Celera821,357,791 - 21,365,062 (+)RGD
Sequence:
RefSeq Acc Id: XM_039082069   ⟹   XP_038937997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,239,993 - 28,249,983 (+)NCBI
mRatBN7.2819,965,830 - 19,973,843 (+)NCBI
RefSeq Acc Id: XM_039082070   ⟹   XP_038937998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,242,709 - 28,249,983 (+)NCBI
mRatBN7.2819,966,531 - 19,973,843 (+)NCBI
RefSeq Acc Id: XR_005487914
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,239,993 - 28,248,992 (+)NCBI
mRatBN7.2819,965,801 - 19,972,852 (+)NCBI
RefSeq Acc Id: NP_071586   ⟸   NM_022250
- UniProtKB: Q9JMA0 (UniProtKB/Swiss-Prot),   Q4QR99 (UniProtKB/Swiss-Prot),   A0A0H2UHF3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010030   ⟸   ENSRNOT00000010030
RefSeq Acc Id: XP_038937997   ⟸   XM_039082069
- Peptide Label: isoform X1
- UniProtKB: A0A0H2UHF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937998   ⟸   XM_039082070
- Peptide Label: isoform X2
Protein Domains
tRNA-guanine(15) transglycosylase-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4QR99-F1-model_v2 AlphaFold Q4QR99 1-403 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620996 AgrOrtholog
BioCyc Gene G2FUF-31420 BioCyc
BioCyc Pathway PWY-8105 [queuosine biosynthesis II (queuine salvage)] BioCyc
BioCyc Pathway Image PWY-8105 BioCyc
Ensembl Genes ENSRNOG00000007158 Ensembl
Gene3D-CATH 3.20.20.105 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7387393 IMAGE-MGC_LOAD
InterPro TGT UniProtKB/Swiss-Prot
  TGT-like_sf UniProtKB/Swiss-Prot
  tRNA_ribo_trans-like UniProtKB/Swiss-Prot
KEGG Report rno:64016 UniProtKB/Swiss-Prot
MGC_CLONE MGC:114324 IMAGE-MGC_LOAD
NCBI Gene 64016 ENTREZGENE
PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 UniProtKB/Swiss-Prot
  QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 UniProtKB/Swiss-Prot
Pfam TGT UniProtKB/Swiss-Prot
PhenoGen Qtrt1 PhenoGen
RatGTEx ENSRNOG00000007158 RatGTEx
Superfamily-SCOP SSF51713 UniProtKB/Swiss-Prot
UniProt A0A0H2UHF3 ENTREZGENE, UniProtKB/TrEMBL
  A6JNR9_RAT UniProtKB/TrEMBL
  A6JNS0_RAT UniProtKB/TrEMBL
  A6JNS1_RAT UniProtKB/TrEMBL
  Q4QR99 ENTREZGENE
  Q9JMA0 ENTREZGENE
  TGT_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q9JMA0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-01 Qtrt1  queuine tRNA-ribosyltransferase catalytic subunit 1  Qtrt1  queuine tRNA-ribosyltransferase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Qtrt1  queuine tRNA-ribosyltransferase 1  Tgt  tRNA-guanine transglycosylase  Symbol and Name updated 1299863 APPROVED
2002-08-07 Tgt  tRNA-guanine transglycosylase      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in liver 724772