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Gene: Gpm6b (glycoprotein m6b) Rattus norvegicus

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Symbol:

Gpm6b

Name:

glycoprotein m6b

RGD ID:

620580

Description:

Predicted to be a structural constituent of myelin sheath. Predicted to be involved in several processes, including negative regulation of protein localization to cell surface; neurogenesis; and positive regulation of bone mineralization. Predicted to be located in membrane. Predicted to be active in membrane raft; myelin sheath; and plasma membrane. Orthologous to human GPM6B (glycoprotein M6B); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; ammonium chloride; astemizole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

M6b; neuronal membrane glycoprotein M6-b; rhombencephalic expression protein-29 kDa; Rhombex-29

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GPM6B (glycoprotein M6B)	HGNC	Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Gpm6b (glycoprotein m6b)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gpm6b (glycoprotein M6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GPM6B (glycoprotein M6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GPM6B (glycoprotein M6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gpm6b (glycoprotein M6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GPM6B (glycoprotein M6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GPM6B (glycoprotein M6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gpm6b (glycoprotein M6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gpm6b (glycoprotein M6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GPM6B (glycoprotein M6B)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Gpm6b (glycoprotein m6b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	gpm6bb (glycoprotein M6Bb)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	gpm6bb (glycoprotein M6Bb)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	gpm6ba (glycoprotein M6Ba)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	gpm6ba (glycoprotein M6Ba)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	M6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nmgp-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	nmgp-1	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	gpm6b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	gpm6b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	31,689,485 - 31,836,199 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	31,690,359 - 31,733,272 (-)	Ensembl				GRCr8
mRatBN7.2	X	28,057,788 - 28,204,409 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	28,059,450 - 28,204,211 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	29,094,697 - 29,135,958 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	32,529,934 - 32,571,264 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	28,709,337 - 28,750,598 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	29,604,607 - 29,751,174 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	29,607,075 - 29,648,403 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	29,997,897 - 30,145,125 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	48,746,584 - 48,788,414 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	28,432,966 - 28,474,260 (-)	NCBI		Celera
RGSC_v3.1	X	48,800,052 - 48,841,883 (-)	NCBI
Cytogenetic Map	X	q13-q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6alpha-methylprednisolone (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

arsenous acid (ISO)

astemizole (EXP)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-naphthoflavone (EXP)

bexarotene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

CGP 52608 (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cocaine (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

DDE (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

diarsenic trioxide (ISO)

diquat (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethanol (ISO)

etoposide (ISO)

folic acid (ISO)

fucoxanthin (ISO)

furan (EXP)

genistein (ISO)

glucose (ISO)

glycidol (EXP)

indometacin (ISO)

L-methionine (ISO)

lead diacetate (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

miconazole (ISO)

N-nitrosodiethylamine (EXP)

nickel sulfate (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

prednisolone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium aurothiomalate (ISO)

sulforaphane (ISO)

temozolomide (ISO)

testosterone enanthate (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vancomycin (ISO)

xylitol (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon development (IBA)

cell differentiation (IEA)

central nervous system myelination (IBA)

extracellular matrix assembly (IEA,ISO,ISS)

negative regulation of protein localization to cell surface (ISO,ISS)

negative regulation of serotonin uptake (ISO,ISS)

nervous system development (IEA)

ossification (IEA)

positive regulation of bone mineralization (IEA,ISO,ISS)

protein transport (IEA)

regulation of actin cytoskeleton organization (IEA,ISO,ISS)

regulation of focal adhesion assembly (IEA,ISO,ISS)

Cellular Component

membrane (IEA)

membrane raft (ISO,ISS)

myelin sheath (IBA)

plasma membrane (IBA,IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

structural constituent of myelin sheath (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Rhombex-29, a novel gene of the PLP/DM20-M6 family cloned from rat medulla oblongata by differential display.	Shimokawa N and Miura M, J Neurosci Res 2000 Oct 1;62(1):1-8.
7.	Molecular cloning of M6: identification of a PLP/DM20 gene family.	Yan Y, etal., Neuron 1993 Sep;11(3):423-31.

Additional References at PubMed

PMID:18581270	PMID:21638316	PMID:22871113	PMID:29282769

Genomics

Comparative Map Data

Gpm6b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	31,689,485 - 31,836,199 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	31,690,359 - 31,733,272 (-)	Ensembl				GRCr8
mRatBN7.2	X	28,057,788 - 28,204,409 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	28,059,450 - 28,204,211 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	29,094,697 - 29,135,958 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	32,529,934 - 32,571,264 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	28,709,337 - 28,750,598 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	29,604,607 - 29,751,174 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	29,607,075 - 29,648,403 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	29,997,897 - 30,145,125 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	48,746,584 - 48,788,414 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	28,432,966 - 28,474,260 (-)	NCBI		Celera
RGSC_v3.1	X	48,800,052 - 48,841,883 (-)	NCBI
Cytogenetic Map	X	q13-q14	NCBI

GPM6B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	13,770,939 - 13,938,638 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	13,770,939 - 13,938,638 (-)	Ensembl			hg38	GRCh38
GRCh37	X	13,789,058 - 13,956,757 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	13,698,983 - 13,866,752 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	13,551,753 - 13,594,971	NCBI
Celera	X	17,906,144 - 18,072,735 (-)	NCBI		Celera
Cytogenetic Map	X	p22.2	NCBI
HuRef	X	11,546,522 - 11,713,553 (-)	NCBI		HuRef
CHM1_1	X	13,819,880 - 13,987,265 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	13,352,374 - 13,518,889 (-)	NCBI		T2T-CHM13v2.0

Gpm6b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	165,021,911 - 165,172,028 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	165,021,907 - 165,171,984 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	166,238,943 - 166,389,033 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	166,238,911 - 166,388,988 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	162,676,875 - 162,826,965 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	161,583,077 - 161,733,093 (+)	NCBI		MGSCv36	mm8
Celera	X	149,417,598 - 149,568,704 (+)	NCBI		Celera
Cytogenetic Map	X	F5	NCBI
cM Map	X	76.86	NCBI

Gpm6b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955519	4,287,026 - 4,432,188 (+)	Ensembl
ChiLan1.0	NW_004955519	4,287,203 - 4,432,188 (+)	NCBI	ChiLan1.0	ChiLan1.0

GPM6B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	15,550,218 - 15,717,075 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	15,553,884 - 15,720,741 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	6,377,913 - 6,544,826 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	13,666,106 - 13,711,964 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	13,666,192 - 13,711,964 (-)	Ensembl			panPan2	panpan1.1

GPM6B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	10,214,889 - 10,375,151 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	10,214,933 - 10,374,837 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	10,189,219 - 10,348,724 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	10,173,111 - 10,333,175 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	10,173,139 - 10,333,044 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	10,241,423 - 10,401,085 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	10,233,032 - 10,392,887 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	10,259,139 - 10,419,234 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gpm6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	3,332,859 - 3,496,039 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	3,332,859 - 3,496,615 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	3,332,856 - 3,496,178 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPM6B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	10,430,301 - 10,582,354 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	10,429,496 - 10,582,768 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	11,383,146 - 11,536,257 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GPM6B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	12,258,386 - 12,429,883 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666056	14,075,770 - 14,244,396 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gpm6b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624882	220,362 - 374,912 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624882	220,267 - 374,912 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gpm6b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	30,366,089 - 30,511,924 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gpm6b
827 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	547
Count of miRNA genes:	258
Interacting mature miRNAs:	325
Transcripts:	ENSRNOT00000006777
Prediction methods:	Microtar, Miranda, Pita, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	24470360	44931007	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	24470360	45082063	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	8111486	53111486	Rat

Markers in Region

DXRat108

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	28,095,363 - 28,095,542 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	29,642,179 - 29,642,357	NCBI	Rnor6.0
Rnor_5.0	X	30,035,541 - 30,035,719	UniSTS	Rnor5.0
RGSC_v3.4	X	48,782,189 - 48,782,368	RGD	RGSC3.4
RGSC_v3.4	X	48,782,190 - 48,782,368	UniSTS	RGSC3.4
Celera	X	28,468,036 - 28,468,214	UniSTS
RGSC_v3.1	X	48,835,659 - 48,835,837	RGD
RH 3.4 Map	X	375.1	RGD
RH 3.4 Map	X	375.1	UniSTS
RH 2.0 Map	21	293.4	RGD
FHH x ACI Map	X	12.36	RGD
Cytogenetic Map	X	q21	UniSTS

RH133686

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	28,060,464 - 28,060,666 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	29,607,284 - 29,607,485	NCBI	Rnor6.0
Rnor_5.0	X	30,000,574 - 30,000,775	UniSTS	Rnor5.0
RGSC_v3.4	X	48,746,793 - 48,746,994	UniSTS	RGSC3.4
Celera	X	28,433,175 - 28,433,376	UniSTS
RH 3.4 Map	X	360.2	UniSTS
Cytogenetic Map	X	q21	UniSTS

RH138360

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	28,064,943 - 28,065,063 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	29,611,763 - 29,611,882	NCBI	Rnor6.0
Rnor_5.0	X	30,005,053 - 30,005,172	UniSTS	Rnor5.0
RGSC_v3.4	X	48,751,272 - 48,751,391	UniSTS	RGSC3.4
Celera	X	28,437,654 - 28,437,773	UniSTS
RH 3.4 Map	X	362.0	UniSTS
Cytogenetic Map	X	q21	UniSTS

GPM6B

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	28,074,510 - 28,074,676 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	29,621,329 - 29,621,494	NCBI	Rnor6.0
Rnor_5.0	X	30,014,619 - 30,014,784	UniSTS	Rnor5.0
RGSC_v3.4	X	48,760,838 - 48,761,003	UniSTS	RGSC3.4
Celera	X	28,447,224 - 28,447,389	UniSTS
Cytogenetic Map	X	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	84	59	6	347	184	11	144	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_138846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB036421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC112090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC130009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006777 ⟹ ENSRNOP00000006777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	31,691,909 - 31,733,194 (-)	Ensembl
mRatBN7.2 Ensembl	X	28,060,256 - 28,101,588 (-)	Ensembl
Rnor_6.0 Ensembl	X	29,607,075 - 29,648,403 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086721 ⟹ ENSRNOP00000070988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	31,690,359 - 31,733,272 (-)	Ensembl
mRatBN7.2 Ensembl	X	28,059,450 - 28,101,834 (-)	Ensembl
Rnor_6.0 Ensembl	X	29,609,377 - 29,648,359 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103098 ⟹ ENSRNOP00000097365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	28,060,255 - 28,204,211 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118568 ⟹ ENSRNOP00000090200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	31,690,359 - 31,733,237 (-)	Ensembl
mRatBN7.2 Ensembl	X	28,060,255 - 28,101,834 (-)	Ensembl

RefSeq Acc Id:

NM_138846 ⟹ NP_620201

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,691,909 - 31,733,237 (-)	NCBI
mRatBN7.2	X	28,060,256 - 28,101,588 (-)	NCBI
Rnor_6.0	X	29,607,075 - 29,648,403 (-)	NCBI
Rnor_5.0	X	29,997,897 - 30,145,125 (-)	NCBI
RGSC_v3.4	X	48,746,584 - 48,788,414 (-)	RGD
Celera	X	28,432,966 - 28,474,260 (-)	RGD

Sequence:

show sequence

CGGTGACGTATGGTCGCCTGCTCCTTGGCAGCTGTCTTTATGGACCAGTAGACAGAGCGAAATT
GACGCTGACAAGACTTTCGCGTCTTGGAAGGCACTGTAATCTACTGTAGTGAAGAACAGAGCCT
CTCAATCAGGCGGGTGGAAATAAGAGAGACAGAGGGGAGTCCAAAAGAAAAGGAAGAGGAGGGG
GAAAAGTGTGTGTTGTGGGGAAGCAGGGAAAAGCATTTTTGGTGGATGGTATGAAGCCAGCCAT
GGAAACTGCAGCCGAGGAAAATACTGAACAAAGCCAAGAGAGAAAAGGTTGCTTCGAATGCTGC
ATCAAGTGTCTGGGAGGAGTTCCCTATGCCTCCCTAGTGGCCACCATCCTATGTTTCTCGGGAG
TCGCCTTGTTCTGTGGCTGTGGACATGTGGCTCTTGCAGGCACCGTGGCAATTCTTGAGCAACA
CTTCTCCACCAACACCAGTGACCATGCCTTGCTGAGCGAAGTGATCCAACTGATGCAGTATGTC
ATCTATGGAATCGCGTCCTTTTTCTTCCTGTACGGTATCATTCTGCTGGCAGAAGGCTTCTACA
CCACAAGTGCAGTGAAAGAGCTGCACGGTGAGTTTAAAACAACTGCCTGTGGACGATGCATCAG
TGGAATGTTCGTGTTCCTCACCTATGTGCTGGGAGTGGCCTGGCTGGGTGTGTTCGGCTTTTCT
GCAGTGCCAGTGTTTATGTTCTACAATATCTGGTCAACCTGTGAAGTCATCAAGTCCCCACAAA
GCAATGGGACCTCGGGTGTGGAGCAGATCTGTGTGGATGTCCGGCAATACGGTATCATTCCTTG
GAACGCTTTCCCAGGCAAAATCTGTGGCTCTGCCCTGGAGAACATCTGCAACACCAATGAGTTC
TACATGTCCTATCATCTGTTCATTGTGGCTTGTGCTGGAGCTGGTGCCACCGTCATTGCCCTGC
TGATCTACATGATGGCTACTACATATAACTATGCGGTTTTGAAGTTTAAGAGTCGGGAAGACTG
CTGCCCTAAGTTCTAATTGCATAAAGGCAATAAGGAGCTATATTTAGAGAACCCAGCCCTGTAG
CGGGTGACCCTCACTGACACTTCAGACTAAAGCGGGCCTAAGGTTTCTGCAGTTCGCTACAGTA
ATTGGTAATAGCTTCAGTTACTCACTTTGCATGGAGACTAAATAGGACTTACTGTACGTGAATT
ACAAAAGAATGGGGTCTGACTATTCCCAGTTTGAAAGGGATTGTTTTTTACTGACACTGGTGAG
CATCCTTTGAAAAATAATTTTCTTAAACTCTGAGCATAAGTATCTCTAAGTGAAATATTAACAC
CTTGACACACCGTTTGTTTTTCCATTTTGTTTGCTTGCTTGATAACCAGCCTTAGCGATGGCCA
AGAGAACAAGTGCTGAAGGCGGAAAGGTTGAACCTAGCTTTCATTTTGTCATCCCTTTCTAGAA
AAGATTTTGCAAGTAGAGTTAAAATTAAGTTGAAAAGGTCTTTATATCACATGGTTGGCTCACT
ACCAAATAAATGCCAAGTTAGACAAGATAAAAATTTGAAGGCCATCACCCATTTGATTTTTCTG
AAAAATGATTACATATTTTTGATACAACACCATTAAGGTCTTTAGACCCCACAACCCTGATAAC
TTTCAATCACCTTGCTACATAGCAACTGTTCCCTTACAACTAGGTTCTTAAATTACATGGAAGA
TTTTCATGAAGAGAAGTTGGGCCCAGATCTGAGGGTCTCATCTATGTTGAGAAGGAAGTATGGC
ATGAGAAAGGAGTCTGGCCTTTAAGGAAACTGAGTTGTGCAGATTTGTTTTGGGCAAGGGGAAA
ATACATGGGAAGGATGCATGTGCCACAGAAACTGTAAAGAATGATAAGGATTTTCATGTGAAGT
GAACTTAGAGGAAATGAAATATTGGCAGTTATAAAAGGAAGAAAATAGTTGCTAAAAATTGTTT
ACAGACTGCATATTTTTAATTTTGGTTTTGACATTCATTTAATTTCTTCATGTTAAATATATAC
TTCTATAATCATTTACGCAAAATAAACATTTTTTCACACCAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256849 ⟹ XP_006256911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,689,485 - 31,739,963 (-)	NCBI
mRatBN7.2	X	28,057,788 - 28,101,742 (-)	NCBI
Rnor_6.0	X	29,604,607 - 29,648,557 (-)	NCBI
Rnor_5.0	X	29,997,897 - 30,145,125 (-)	NCBI

Sequence:

show sequence

GAAAAAAGGGAGGGCAGAGAGACAGACAGAGAGACAGAGAGAGGGAGAGACAGAGACAGAGAGA
GGGGGAGGAAGAGCTTGGTGGGGGAGCAGGAGCTTCCTGGGGTGCACTGAGAGTGGGGGCACAG
AGTGGCTGTTTTATAACCGGGATCCTCGGTGACGTATGGTCGCCTGCTCCTTGGCAGCTGTCTT
TATGGACCAGTAGGCAGAGCGAAATTGACGCTGACAAGACTTTCGCGTCTTGGAAGGCACTGTA
ATCTACTGTAGTGAAGAACAGAGCCTCTCAATCAGGCGGGTGGAAATAAGAGAGACAGAGGGGA
GTCCAAAAGAAAAGGAAGAGGAGGGGGAAAAGTGTGTGTTGTGGGGAAGCAGGGAAAAGCATTT
TTGGTGGATGGTATGAAGCCAGCCATGGAAACTGCAGCCGAGGAAAATACTGAACAAAGCCAAG
AGAGAAAAGTGAACAGCAGAGCTGAAATGGAAATTGGCAGGTACCACTGGATGTACCCAGGCTC
AAAGAACCATCAGTACCGTCCTGTGCCAACCCTGGGGGACAGGGCTGGCCCCTTGAGCAGTCCA
GGTTGCTTCGAATGCTGCATCAAGTGTCTGGGAGGAGTTCCCTATGCCTCCCTAGTGGCCACCA
TCCTATGTTTCTCGGGAGTCGCCTTGTTCTGTGGCTGTGGACATGTGGCTCTTGCAGGCACCGT
GGCAATTCTTGAGCAACACTTCTCCACCAACACCAGTGACCATGCCTTGCTGAGCGAAGTGATC
CAACTGATGCAGTATGTCATCTATGGAATCGCGTCCTTTTTCTTCCTGTACGGTATCATTCTGC
TGGCAGAAGGCTTCTACACCACAAGTGCAGTGAAAGAGCTGCACGGTGAGTTTAAAACAACTGC
CTGTGGACGATGCATCAGTGGAATGTTCGTGTTCCTCACCTATGTGCTGGGAGTGGCCTGGCTG
GGTGTGTTCGGCTTTTCTGCAGTGCCAGTGTTTATGTTCTACAATATCTGGTCAACCTGTGAAG
TCATCAAGTCCCCACAAAGCAATGGGACCTCGGGTGTGGAGCAGATCTGTGTGGATGTCCGGCA
ATACGGTATCATTCCTTGGAACGCTTTCCCAGGCAAAATCTGTGGCTCTGCCCTGGAGAACATC
TGCAACACCAATGAGTTCTACATGTCCTATCATCTGTTCATTGTGGCTTGTGCTGGAGCTGGTG
CCACCGTCATTGCCCTGATCCACTTCCTCATGATACTGTCTTCTAACTGGGCTTACTTAAAGGA
TGCAAGCAAAATGCAGGCTTACCAGGATATCAAAGCAAAGGAGGAACAGGAACTGCAAGATATC
CAGTCTCGGTCAAAAGAACAACTCAATTCTTATACTTAAAAGTGTTTGCCAGAGTGTGTCAGCC
AACAGATTTACAGCTCTGACATCATCAGACAGCTGCTCTGCAGTACAGATGTGTATCCCACCAA
ACTAATGTAGACGTACCAACATTTCACTGTCTGTCTCAAGCTGCTGGGGTGGATCTCTAGGAAA
ACCTTCCAGTGGGTAAATAATTTTCTTTAGGACAAATATCGGAGGTTTCATGTTAACCATTTTA
AAAGGCAACACTTTGGCAGAATGACCATTCATCCTTTAGAAGGTCGTGGCATGTGCAGGTAACT
GCTAGAGCAGTTCTAACACAGGGCATGGAATCACATCATGTCCCTTAATGGGGACCTATGGCAT
GCCAGTATCAAAGGACGTGACTGTAGATTTACATTTGCCACCTGTGTCCTCCAGTGTTATCAAA
ATAGAATCAATGTGAAGTTCGTTTTGATAGCTGACCTTTATTAACCTTTGGCTCATCAAAGATA
ATGTGATTCTTCCAAACTTAAAAATCAGCACCCCCACGGTGTCATATTCATTTCCCAAGCCACT
CAGAAACCTATGTTTTAGTGATGCTAAAATGAGCTGTAATTATGCTAAATTTATCAGTGCAGAA
GCTGGATTCTGACTCGAGCTCTGCAAAATCAGTTTTATAGTCGATCACATTGTAACAAAATGGG
AGGATTTGGTGATCACCATTGTTGTTTGGAAACAAATATCAGCTCTGCCTTAATATTTGCTTTC
AATTTCTAATAATTTATATTGTAACCAGAAACCCAAAAATCCTTCATAGATTTTTGTTTCATGA
ATACTTTTTCTTAAGAAGTGTTACCTTGTTAAAATGACCACCATTCTAAACCATTTTTAAGTGG
TCTGGACAGTGAGTTTACAGTTTCCTATCAACTATCTAAAACCTAACTGCAAATTGACCACAGA
CCTCTGACCTCCTACTTTTATAGACTTTAATACATAAGTAAATTAGGGTTGATATTTATTTCAT
TGTTTTCTTATCTAAATCTTAATTTCCTGGAATAATAATGTTTGATATTCAGCAAGAAAACTGC
TTGAGTTTAAGCCATTTTCAAAAGAAACTTGCCTTCTAACTCATTGTGTTCCAGAACATTAAGT
GACTAATAGGTACTGGGTATTAGTGATGGTAAGTTTTGTGTTGTTCTTTCTGGAATGATCCATA
TAACTGTGGGGTGCATCAGTGCTTTTCAAAGGGGCTGCATACTATAGGGTTAACTATGTATATT
CATGTTAAGAGTTAACTTGTGGTTTGGCTGTTTCCTGGATTTTAAAACATATACATGTGCAGAA
ATGTATTCAAATGAAAGGAAGCATACCTTTATGAAGATGCTATTAAAATTGAACAGCAACTATA
ATATTTCATTTGGATTTTTTTCTTTTGGTGAATGCGGAAAACACCTATTTGGGTTCCTTTGAAT
TGGGAGGCGCTCTCTTCTGTGTAGAACAGCTGTTCCAAGATAGCTTAGTGTTTCGTTTTCCTGT
TGCATGACAGAATTCACTATTTTTTCCAGCAGTGGAGGTGCTGTTAGAGTCCAGTGTTCTAGAA
GAGCCAGTGTCTAAAGCCTAATTTTACTTTTCTAATTCTGGTAGCTATTGCCAGGAATTTTTGA
AAGTTTTGTTGAAGTAGTCTAATATTTTTTATGTAAAGAGCATTAAATTTTGCTATGTATAAAT
TTTTGTAACCTAACAGTGAATCAATATTTTCTATCAGTGCCAAGGGCTTCCTGTAGTTCTATTC
AAGTGTTACAATAAATATTTGTAGATAATAGTCGATACTTGTGTATGCTTATTTTAAAGATCTA
TTTAGGTGGAAATAGTTGTGGATGTACTAAAGAATAATGAAATAAAATTATAGCTTCATTCGCT
TGCCTTTTTACCATACATAAATCCTATCTTTCTCTGTT

hide sequence

RefSeq Acc Id:

XM_006256850 ⟹ XP_006256912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,689,485 - 31,739,963 (-)	NCBI
mRatBN7.2	X	28,057,788 - 28,101,742 (-)	NCBI
Rnor_6.0	X	29,606,624 - 29,648,557 (-)	NCBI
Rnor_5.0	X	29,997,897 - 30,145,125 (-)	NCBI

Sequence:

show sequence

GAAAAAAGGGAGGGCAGAGAGACAGACAGAGAGACAGAGAGAGGGAGAGACAGAGACAGAGAGA
GGGGGAGGAAGAGCTTGGTGGGGGAGCAGGAGCTTCCTGGGGTGCACTGAGAGTGGGGGCACAG
AGTGGCTGTTTTATAACCGGGATCCTCGGTGACGTATGGTCGCCTGCTCCTTGGCAGCTGTCTT
TATGGACCAGTAGGCAGAGCGAAATTGACGCTGACAAGACTTTCGCGTCTTGGAAGGCACTGTA
ATCTACTGTAGTGAAGAACAGAGCCTCTCAATCAGGCGGGTGGAAATAAGAGAGACAGAGGGGA
GTCCAAAAGAAAAGGAAGAGGAGGGGGAAAAGTGTGTGTTGTGGGGAAGCAGGGAAAAGCATTT
TTGGTGGATGGTATGAAGCCAGCCATGGAAACTGCAGCCGAGGAAAATACTGAACAAAGCCAAG
AGAGAAAAGTGAACAGCAGAGCTGAAATGGAAATTGGCAGGTACCACTGGATGTACCCAGGCTC
AAAGAACCATCAGTACCGTCCTGTGCCAACCCTGGGGGACAGGGCTGGCCCCTTGAGCAGTCCA
GGTTGCTTCGAATGCTGCATCAAGTGTCTGGGAGGAGTTCCCTATGCCTCCCTAGTGGCCACCA
TCCTATGTTTCTCGGGAGTCGCCTTGTTCTGTGGCTGTGGACATGTGGCTCTTGCAGGCACCGT
GGCAATTCTTGAGCAACACTTCTCCACCAACACCAGTGACCATGCCTTGCTGAGCGAAGTGATC
CAACTGATGCAGTATGTCATCTATGGAATCGCGTCCTTTTTCTTCCTGTACGGTATCATTCTGC
TGGCAGAAGGCTTCTACACCACAAGTGCAGTGAAAGAGCTGCACGGTGAGTTTAAAACAACTGC
CTGTGGACGATGCATCAGTGGAATGTTCGTGTTCCTCACCTATGTGCTGGGAGTGGCCTGGCTG
GGTGTGTTCGGCTTTTCTGCAGTGCCAGTGTTTATGTTCTACAATATCTGGTCAACCTGTGAAG
TCATCAAGTCCCCACAAAGCAATGGGACCTCGGGTGTGGAGCAGATCTGTGTGGATGTCCGGCA
ATACGGTATCATTCCTTGGAACGCTTTCCCAGGCAAAATCTGTGGCTCTGCCCTGGAGAACATC
TGCAACACCAATGAGTTCTACATGTCCTATCATCTGTTCATTGTGGCTTGTGCTGGAGCTGGTG
CCACCGTCATTGCCCTGCTGATCTACATGATGGCTACTACATATAACTATGCGGTTTTGAAGTT
TAAGAGTCGGGAAGACTGCTGCACTAAGTTCTAAATTGCATAAGGCCAATAAGGAGCTATATTT
AGAGAGCTCAGCTCTGTAGCGTGAACCTCACTGACACTTCAGACTAAAGCGGAGCCTAGGTTTC
TGCAGTTCGCTACAGTAATTTGTAAATAGCTTCAGTTAACTCACTTTGCATGGTAGACTAAATA
GGACTTACTGTACGTGAATTACAAAAGAATGGGGTCTGACTATTCCCAGTTTGAAAGGGATTGT
TATTTACTGACACTGGTGAGCATCCTTTGAAAAATAATTTTCTTAAACTCTGAGCATAAGTATC
TCTAAGTGAAATATTAACACCTTGACACACCGTTTGTTTTTCCATTTTGTTTGCTTGCTTGATA
ACCAGCCTTAGCGATGGCCAAGAGAACAAGTGCTGAAGGCGGAAAGGTTGAACCTAGCTTTCAT
TTTGTCATTCCTTTCTAGAAAAGATTTTGCAAGTAGAGTTAAAATTAAGTTGAAAAGGTCTTTA
TATCACATGGTTGGCTCACTACCAAATAAATGCCAAGTTAGACAAGATAAAAATTTGAAGGCCA
TCACCCATTTGATTTTTCTGAAAAATGATTACATATTTTTGATACAACACCATTAAGGTCTTTA
GAACCCACAAACCTGATAACTTTCAATCACCTTGCTACATAGCAACTGTTCCCTTACAACTAGG
TTCTTAAATTACATGGAAGATTTTCATGAAGAGAAGTTGGGCCCAGATCTGAGGGTCTCATCTA
TGTTGAGAAGGAAGTATGGCATGAGAAAGGAGTCTGGCCTTTAAGGAAACTGAGTTGTGCAGAT
TTGTTTTGGGCAAGGGGAAAATACATGGGAAGGATGCATGTGCCACAGAAACTGTAAAGAATGA
TAAGGATTTTCATGTGAAGTGAACTTAGAGGAAATGAAATATTGGCAGTTATAAAAGGAAGAAA
ATAGTTGCTAAAAATTGTTTACAGACTGCATATTTTTAATTTTGGTTTTGACATTCATTTAATT
TCTCCATGTTAAATATATACTTCTATAATCATTTACGCAAAATAAACATTTTTTCACACTTTGT
AGGCCTTTTGGGGATTTTTTTTTACCAACAGATAAGTCTTTGCTCTACATTTTTAAAGATAAAC
AGCAACGTGTTTCAGAACTTCTGCATTTGTCTTTCAAAATTACTCTCAAAATGGTAAAAAGCAC
TGGCATATATTTCATTTTTATTTCTTCTTAACAATAACTTTGGTCATTTTATTCCCAAGTTCAC
TATATTTGCATACTAACGTTTCTTCAGCCTCGTAATATGAAGCGAACTAGTAGAGCATGCTCTG
TGTCCGACAGCTCTGCTAGCAGAAGAGTATTAATAGCGAATAACCCCGCCCTCCCCAGCTGATC
CGTCTAATCTGACTAGCAGCTCGCTTTGCCTTCTCACATGCTCACTAGCCATCATGCTCACCCT
TCTTTTCCAGATCCACTTCCTCATGATACTGTCTTCTAACTGGGCTTACTTAAAGGATGCAA

hide sequence

RefSeq Acc Id:

XM_006256851 ⟹ XP_006256913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,689,485 - 31,739,963 (-)	NCBI
mRatBN7.2	X	28,057,788 - 28,101,622 (-)	NCBI
Rnor_6.0	X	29,604,607 - 29,648,512 (-)	NCBI
Rnor_5.0	X	29,997,897 - 30,145,125 (-)	NCBI

Sequence:

show sequence

AGAGACAGAGACAGAGAGAGGGGGAGGAAGAGCTTGGTGGGGGAGCAGGAGCTTCCTGGGGTGC
ACTGAGAGTGGGGGCACAGAGTGGCTGTTTTATAACCGGGATCCTCGGTGACGTATGGTCGCCT
GCTCCTTGGCAGCTGTCTTTATGGACCAGTAGGCAGAGCGAAATTGACGCTGACAAGACTTTCG
CGTCTTGGAAGGCACTGTAATCTACTGTAGTGAAGAACAGAGCCTCTCAATCAGGCGGGTGGAA
ATAAGAGAGACAGAGGGGAGTCCAAAAGAAAAGGAAGAGGAGGGGGAAAAGTGTGTGTTGTGGG
GAAGCAGGGAAAAGCATTTTTGGTGGATGGTATGAAGCCAGCCATGGAAACTGCAGCCGAGGAA
AATACTGAACAAAGCCAAGAGAGAAAAGGTTGCTTCGAATGCTGCATCAAGTGTCTGGGAGGAG
TTCCCTATGCCTCCCTAGTGGCCACCATCCTATGTTTCTCGGGAGTCGCCTTGTTCTGTGGCTG
TGGACATGTGGCTCTTGCAGGCACCGTGGCAATTCTTGAGCAACACTTCTCCACCAACACCAGT
GACCATGCCTTGCTGAGCGAAGTGATCCAACTGATGCAGTATGTCATCTATGGAATCGCGTCCT
TTTTCTTCCTGTACGGTATCATTCTGCTGGCAGAAGGCTTCTACACCACAAGTGCAGTGAAAGA
GCTGCACGGTGAGTTTAAAACAACTGCCTGTGGACGATGCATCAGTGGAATGTTCGTGTTCCTC
ACCTATGTGCTGGGAGTGGCCTGGCTGGGTGTGTTCGGCTTTTCTGCAGTGCCAGTGTTTATGT
TCTACAATATCTGGTCAACCTGTGAAGTCATCAAGTCCCCACAAAGCAATGGGACCTCGGGTGT
GGAGCAGATCTGTGTGGATGTCCGGCAATACGGTATCATTCCTTGGAACGCTTTCCCAGGCAAA
ATCTGTGGCTCTGCCCTGGAGAACATCTGCAACACCAATGAGTTCTACATGTCCTATCATCTGT
TCATTGTGGCTTGTGCTGGAGCTGGTGCCACCGTCATTGCCCTGATCCACTTCCTCATGATACT
GTCTTCTAACTGGGCTTACTTAAAGGATGCAAGCAAAATGCAGGCTTACCAGGATATCAAAGCA
AAGGAGGAACAGGAACTGCAAGATATCCAGTCTCGGTCAAAAGAACAACTCAATTCTTATACTT
AAAAGTGTTTGCCAGAGTGTGTCAGCCAACAGATTTACAGCTCTGACATCATCAGACAGCTGCT
CTGCAGTACAGATGTGTATCCCACCAAACTAATGTAGACGTACCAACATTTCACTGTCTGTCTC
AAGCTGCTGGGGTGGATCTCTAGGAAAACCTTCCAGTGGGTAAATAATTTTCTTTAGGACAAAT
ATCGGAGGTTTCATGTTAACCATTTTAAAAGGCAACACTTTGGCAGAATGACCATTCATCCTTT
AGAAGGTCGTGGCATGTGCAGGTAACTGCTAGAGCAGTTCTAACACAGGGCATGGAATCACATC
ATGTCCCTTAATGGGGACCTATGGCATGCCAGTATCAAAGGACGTGACTGTAGATTTACATTTG
CCACCTGTGTCCTCCAGTGTTATCAAAATAGAATCAATGTGAAGTTCGTTTTGATAGCTGACCT
TTATTAACCTTTGGCTCATCAAAGATAATGTGATTCTTCCAAACTTAAAAATCAGCACCCCCAC
GGTGTCATATTCATTTCCCAAGCCACTCAGAAACCTATGTTTTAGTGATGCTAAAATGAGCTGT
AATTATGCTAAATTTATCAGTGCAGAAGCTGGATTCTGACTCGAGCTCTGCAAAATCAGTTTTA
TAGTCGATCACATTGTAACAAAATGGGAGGATTTGGTGATCACCATTGTTGTTTGGAAACAAAT
ATCAGCTCTGCCTTAATATTTGCTTTCAATTTCTAATAATTTATATTGTAACCAGAAACCCAAA
AATCCTTCATAGATTTTTGTTTCATGAATACTTTTTCTTAAGAAGTGTTACCTTGTTAAAATGA
CCACCATTCTAAACCATTTTTAAGTGGTCTGGACAGTGAGTTTACAGTTTCCTATCAACTATCT
AAAACCTAACTGCAAATTGACCACAGACCTCTGACCTCCTACTTTTATAGACTTTAATACATAA
GTAAATTAGGGTTGATATTTATTTCATTGTTTTCTTATCTAAATCTTAATTTCCTGGAATAATA
ATGTTTGATATTCAGCAAGAAAACTGCTTGAGTTTAAGCCATTTTCAAAAGAAACTTGCCTTCT
AACTCATTGTGTTCCAGAACATTAAGTGACTAATAGGTACTGGGTATTAGTGATGGTAAGTTTT
GTGTTGTTCTTTCTGGAATGATCCATATAACTGTGGGGTGCATCAGTGCTTTTCAAAGGGGCTG
CATACTATAGGGTTAACTATGTATATTCATGTTAAGAGTTAACTTGTGGTTTGGCTGTTTCCTG
GATTTTAAAACATATACATGTGCAGAAATGTATTCAAATGAAAGGAAGCATACCTTTATGAAGA
TGCTATTAAAATTGAACAGCAACTATAATATTTCATTTGGATTTTTTTCTTTTGGTGAATGCGG
AAAACACCTATTTGGGTTCCTTTGAATTGGGAGGCGCTCTCTTCTGTGTAGAACAGCTGTTCCA
AGATAGCTTAGTGTTTCGTTTTCCTGTTGCATGACAGAATTCACTATTTTTTCCAGCAGTGGAG
GTGCTGTTAGAGTCCAGTGTTCTAGAAGAGCCAGTGTCTAAAGCCTAATTTTACTTTTCTAATT
CTGGTAGCTATTGCCAGGAATTTTTGAAAGTTTTGTTGAAGTAGTCTAATATTTTTTATGTAAA
GAGCATTAAATTTTGCTATGTATAAATTTTTGTAACCTAACAGTGAATCAATATTTTCTATCAG
TGCCAAGGGCTTCCTGTAGTTCTATTCAAGTGTTACAATAAATATTTGTAGATAATAGTCGATA
CTTGTGTATGCTTATTTTAAAGATCTATTTAGGTGGAAATAGTTGTGGATGTACTAAAGAATAA
TGAAATAAAATTATAGCTTCATTCGCTTGCCTTTTTACCATACATAAATCCTATCTTTCTCTGT
T

hide sequence

RefSeq Acc Id:

XM_008773151 ⟹ XP_008771373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,689,485 - 31,835,956 (-)	NCBI
mRatBN7.2	X	28,057,788 - 28,204,142 (-)	NCBI
Rnor_6.0	X	29,604,607 - 29,750,943 (-)	NCBI

Sequence:

show sequence

CAAGCGGCCAGCCCAGCTCTGCCCAGCGCAGCCAGCCCGGAGCCCGGCCCCACGCACGTGCCCG
CCAGACCTGCAAACTTGTGCCACCGGCTATCCTGCGTCCCCGGGGAGCCCAATCGCCCGGAGCC
CGCACCCCTCCCGCCAGTCTCCAACCATGGGTTGCTTCGAATGCTGCATCAAGTGTCTGGGAGG
AGTTCCCTATGCCTCCCTAGTGGCCACCATCCTATGTTTCTCGGGAGTCGCCTTGTTCTGTGGC
TGTGGACATGTGGCTCTTGCAGGCACCGTGGCAATTCTTGAGCAACACTTCTCCACCAACACCA
GTGACCATGCCTTGCTGAGCGAAGTGATCCAACTGATGCAGTATGTCATCTATGGAATCGCGTC
CTTTTTCTTCCTGTACGGTATCATTCTGCTGGCAGAAGGCTTCTACACCACAAGTGCAGTGAAA
GAGCTGCACGGTGAGTTTAAAACAACTGCCTGTGGACGATGCATCAGTGGAATGTTCGTGTTCC
TCACCTATGTGCTGGGAGTGGCCTGGCTGGGTGTGTTCGGCTTTTCTGCAGTGCCAGTGTTTAT
GTTCTACAATATCTGGTCAACCTGTGAAGTCATCAAGTCCCCACAAAGCAATGGGACCTCGGGT
GTGGAGCAGATCTGTGTGGATGTCCGGCAATACGGTATCATTCCTTGGAACGCTTTCCCAGGCA
AAATCTGTGGCTCTGCCCTGGAGAACATCTGCAACACCAATGAGTTCTACATGTCCTATCATCT
GTTCATTGTGGCTTGTGCTGGAGCTGGTGCCACCGTCATTGCCCTGATCCACTTCCTCATGATA
CTGTCTTCTAACTGGGCTTACTTAAAGGATGCAAGCAAAATGCAGGCTTACCAGGATATCAAAG
CAAAGGAGGAACAGGAACTGCAAGATATCCAGTCTCGGTCAAAAGAACAACTCAATTCTTATAC
TTAAAAGTGTTTGCCAGAGTGTGTCAGCCAACAGATTTACAGCTCTGACATCATCAGACAGCTG
CTCTGCAGTACAGATGTGTATCCCACCAAACTAATGTAGACGTACCAACATTTCACTGTCTGTC
TCAAGCTGCTGGGGTGGATCTCTAGGAAAACCTTCCAGTGGGTAAATAATTTTCTTTAGGACAA
ATATCGGAGGTTTCATGTTAACCATTTTAAAAGGCAACACTTTGGCAGAATGACCATTCATCCT
TTAGAAGGTCGTGGCATGTGCAGGTAACTGCTAGAGCAGTTCTAACACAGGGCATGGAATCACA
TCATGTCCCTTAATGGGGACCTATGGCATGCCAGTATCAAAGGACGTGACTGTAGATTTACATT
TGCCACCTGTGTCCTCCAGTGTTATCAAAATAGAATCAATGTGAAGTTCGTTTTGATAGCTGAC
CTTTATTAACCTTTGGCTCATCAAAGATAATGTGATTCTTCCAAACTTAAAAATCAGCACCCCC
ACGGTGTCATATTCATTTCCCAAGCCACTCAGAAACCTATGTTTTAGTGATGCTAAAATGAGCT
GTAATTATGCTAAATTTATCAGTGCAGAAGCTGGATTCTGACTCGAGCTCTGCAAAATCAGTTT
TATAGTCGATCACATTGTAACAAAATGGGAGGATTTGGTGATCACCATTGTTGTTTGGAAACAA
ATATCAGCTCTGCCTTAATATTTGCTTTCAATTTCTAATAATTTATATTGTAACCAGAAACCCA
AAAATCCTTCATAGATTTTTGTTTCATGAATACTTTTTCTTAAGAAGTGTTACCTTGTTAAAAT
GACCACCATTCTAAACCATTTTTAAGTGGTCTGGACAGTGAGTTTACAGTTTCCTATCAACTAT
CTAAAACCTAACTGCAAATTGACCACAGACCTCTGACCTCCTACTTTTATAGACTTTAATACAT
AAGTAAATTAGGGTTGATATTTATTTCATTGTTTTCTTATCTAAATCTTAATTTCCTGGAATAA
TAATGTTTGATATTCAGCAAGAAAACTGCTTGAGTTTAAGCCATTTTCAAAAGAAACTTGCCTT
CTAACTCATTGTGTTCCAGAACATTAAGTGACTAATAGGTACTGGGTATTAGTGATGGTAAGTT
TTGTGTTGTTCTTTCTGGAATGATCCATATAACTGTGGGGTGCATCAGTGCTTTTCAAAGGGGC
TGCATACTATAGGGTTAACTATGTATATTCATGTTAAGAGTTAACTTGTGGTTTGGCTGTTTCC
TGGATTTTAAAACATATACATGTGCAGAAATGTATTCAAATGAAAGGAAGCATACCTTTATGAA
GATGCTATTAAAATTGAACAGCAACTATAATATTTCATTTGGATTTTTTTCTTTTGGTGAATGC
GGAAAACACCTATTTGGGTTCCTTTGAATTGGGAGGCGCTCTCTTCTGTGTAGAACAGCTGTTC
CAAGATAGCTTAGTGTTTCGTTTTCCTGTTGCATGACAGAATTCACTATTTTTTCCAGCAGTGG
AGGTGCTGTTAGAGTCCAGTGTTCTAGAAGAGCCAGTGTCTAAAGCCTAATTTTACTTTTCTAA
TTCTGGTAGCTATTGCCAGGAATTTTTGAAAGTTTTGTTGAAGTAGTCTAATATTTTTTATGTA
AAGAGCATTAAATTTTGCTATGTATAAATTTTTGTAACCTAACAGTGAATCAATATTTTCTATC
AGTGCCAAGGGCTTCCTGTAGTTCTATTCAAGTGTTACAATAAATATTTGTAGATAATAGTCGA
TACTTGTGTATGCTTATTTTAAAGATCTATTTAGGTGGAAATAGTTGTGGATGTACTAAAGAAT
AATGAAATAAAATTATAGCTTCATTCGCTTGCCTTTTTACCATACATAAATCCTATCTTTCTCT
GTT

hide sequence

RefSeq Acc Id:

XM_017601904 ⟹ XP_017457393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,689,485 - 31,836,199 (-)	NCBI
mRatBN7.2	X	28,057,788 - 28,204,409 (-)	NCBI
Rnor_6.0	X	29,604,607 - 29,751,174 (-)	NCBI

Sequence:

show sequence

CCTACCCCCACCCCCCCCCCCCCTGCGTCTCCAGTTTCCATGCCCCTCACTCCAGGGTCTCAGT
GAAAGCTACAAGCTTACAACAGCTCGGTCACCGCCACTGCCCCAGCCTGGCCCTCGCTCCGGGC
GCACAAAGCCCCCGGCGCTGACGTCAGGGCCCCTCTCGGCACGGCCGGCCCCCAGTGCAGGCGG
AGCTGCGCGGCGCTCCCACCCCGGCCAGGAGCGAAGAGCCAAGCGGCCAGCCCAGCTCTGCCCA
GCGCAGCCAGCCCGGAGCCCGGCCCCACGCACGTGCCCGCCAGACCTGCAAACTTGTGCCACCG
GCTATCCTGCGTCCCCGGGGAGCCCAATCGCCCGGAGCCCGCACCCCTCCCGCCAGTCTCCAAC
CATGGTGAACAGCAGAGCTGAAATGGAAATTGGCAGGTACCACTGGATGTACCCAGGCTCAAAG
AACCATCAGTACCGTCCTGTGCCAACCCTGGGGGACAGGGCTGGCCCCTTGAGCAGTCCAGGTT
GCTTCGAATGCTGCATCAAGTGTCTGGGAGGAGTTCCCTATGCCTCCCTAGTGGCCACCATCCT
ATGTTTCTCGGGAGTCGCCTTGTTCTGTGGCTGTGGACATGTGGCTCTTGCAGGCACCGTGGCA
ATTCTTGAGCAACACTTCTCCACCAACACCAGTGACCATGCCTTGCTGAGCGAAGTGATCCAAC
TGATGCAGTATGTCATCTATGGAATCGCGTCCTTTTTCTTCCTGTACGGTATCATTCTGCTGGC
AGAAGGCTTCTACACCACAAGTGCAGTGAAAGAGCTGCACGGTGAGTTTAAAACAACTGCCTGT
GGACGATGCATCAGTGGAATGTTCGTGTTCCTCACCTATGTGCTGGGAGTGGCCTGGCTGGGTG
TGTTCGGCTTTTCTGCAGTGCCAGTGTTTATGTTCTACAATATCTGGTCAACCTGTGAAGTCAT
CAAGTCCCCACAAAGCAATGGGACCTCGGGTGTGGAGCAGATCTGTGTGGATGTCCGGCAATAC
GGTATCATTCCTTGGAACGCTTTCCCAGGCAAAATCTGTGGCTCTGCCCTGGAGAACATCTGCA
ACACCAATGAGTTCTACATGTCCTATCATCTGTTCATTGTGGCTTGTGCTGGAGCTGGTGCCAC
CGTCATTGCCCTGATCCACTTCCTCATGATACTGTCTTCTAACTGGGCTTACTTAAAGGATGCA
AGCAAAATGCAGGCTTACCAGGATATCAAAGCAAAGGAGGAACAGGAACTGCAAGATATCCAGT
CTCGGTCAAAAGAACAACTCAATTCTTATACTTAAAAGTGTTTGCCAGAGTGTGTCAGCCAACA
GATTTACAGCTCTGACATCATCAGACAGCTGCTCTGCAGTACAGATGTGTATCCCACCAAACTA
ATGTAGACGTACCAACATTTCACTGTCTGTCTCAAGCTGCTGGGGTGGATCTCTAGGAAAACCT
TCCAGTGGGTAAATAATTTTCTTTAGGACAAATATCGGAGGTTTCATGTTAACCATTTTAAAAG
GCAACACTTTGGCAGAATGACCATTCATCCTTTAGAAGGTCGTGGCATGTGCAGGTAACTGCTA
GAGCAGTTCTAACACAGGGCATGGAATCACATCATGTCCCTTAATGGGGACCTATGGCATGCCA
GTATCAAAGGACGTGACTGTAGATTTACATTTGCCACCTGTGTCCTCCAGTGTTATCAAAATAG
AATCAATGTGAAGTTCGTTTTGATAGCTGACCTTTATTAACCTTTGGCTCATCAAAGATAATGT
GATTCTTCCAAACTTAAAAATCAGCACCCCCACGGTGTCATATTCATTTCCCAAGCCACTCAGA
AACCTATGTTTTAGTGATGCTAAAATGAGCTGTAATTATGCTAAATTTATCAGTGCAGAAGCTG
GATTCTGACTCGAGCTCTGCAAAATCAGTTTTATAGTCGATCACATTGTAACAAAATGGGAGGA
TTTGGTGATCACCATTGTTGTTTGGAAACAAATATCAGCTCTGCCTTAATATTTGCTTTCAATT
TCTAATAATTTATATTGTAACCAGAAACCCAAAAATCCTTCATAGATTTTTGTTTCATGAATAC
TTTTTCTTAAGAAGTGTTACCTTGTTAAAATGACCACCATTCTAAACCATTTTTAAGTGGTCTG
GACAGTGAGTTTACAGTTTCCTATCAACTATCTAAAACCTAACTGCAAATTGACCACAGACCTC
TGACCTCCTACTTTTATAGACTTTAATACATAAGTAAATTAGGGTTGATATTTATTTCATTGTT
TTCTTATCTAAATCTTAATTTCCTGGAATAATAATGTTTGATATTCAGCAAGAAAACTGCTTGA
GTTTAAGCCATTTTCAAAAGAAACTTGCCTTCTAACTCATTGTGTTCCAGAACATTAAGTGACT
AATAGGTACTGGGTATTAGTGATGGTAAGTTTTGTGTTGTTCTTTCTGGAATGATCCATATAAC
TGTGGGGTGCATCAGTGCTTTTCAAAGGGGCTGCATACTATAGGGTTAACTATGTATATTCATG
TTAAGAGTTAACTTGTGGTTTGGCTGTTTCCTGGATTTTAAAACATATACATGTGCAGAAATGT
ATTCAAATGAAAGGAAGCATACCTTTATGAAGATGCTATTAAAATTGAACAGCAACTATAATAT
TTCATTTGGATTTTTTTCTTTTGGTGAATGCGGAAAACACCTATTTGGGTTCCTTTGAATTGGG
AGGCGCTCTCTTCTGTGTAGAACAGCTGTTCCAAGATAGCTTAGTGTTTCGTTTTCCTGTTGCA
TGACAGAATTCACTATTTTTTCCAGCAGTGGAGGTGCTGTTAGAGTCCAGTGTTCTAGAAGAGC
CAGTGTCTAAAGCCTAATTTTACTTTTCTAATTCTGGTAGCTATTGCCAGGAATTTTTGAAAGT
TTTGTTGAAGTAGTCTAATATTTTTTATGTAAAGAGCATTAAATTTTGCTATGTATAAATTTTT
GTAACCTAACAGTGAATCAATATTTTCTATCAGTGCCAAGGGCTTCCTGTAGTTCTATTCAAGT
GTTACAATAAATATTTGTAGATAATAGTCGATACTTGTGTATGCTTATTTTAAAGATCTATTTA
GGTGGAAATAGTTGTGGATGTACTAAAGAATAATGAAATAAAATTATAGCTTCATTCGCTTGCC
TTTTTACCATACATAAATCCTATCTTTCTCTGTT

hide sequence

RefSeq Acc Id:

XM_039099441 ⟹ XP_038955369

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,689,485 - 31,729,252 (-)	NCBI
mRatBN7.2	X	28,057,788 - 28,097,603 (-)	NCBI

RefSeq Acc Id:

XM_039099442 ⟹ XP_038955370

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,694,222 - 31,739,963 (-)	NCBI
mRatBN7.2	X	28,062,569 - 28,101,742 (-)	NCBI

RefSeq Acc Id:

XM_063279770 ⟹ XP_063135840

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,689,485 - 31,729,262 (-)	NCBI

RefSeq Acc Id:

XM_063279771 ⟹ XP_063135841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,689,485 - 31,835,827 (-)	NCBI

RefSeq Acc Id:

XM_063279772 ⟹ XP_063135842

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,689,485 - 31,739,963 (-)	NCBI

RefSeq Acc Id:

XM_063279773 ⟹ XP_063135843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	31,694,213 - 31,835,852 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418611	(Get FASTA)	NCBI Sequence Viewer
	NP_001418612	(Get FASTA)	NCBI Sequence Viewer
	NP_001418613	(Get FASTA)	NCBI Sequence Viewer
	NP_001418615	(Get FASTA)	NCBI Sequence Viewer
	NP_001418616	(Get FASTA)	NCBI Sequence Viewer
	NP_001418618	(Get FASTA)	NCBI Sequence Viewer
	NP_001418620	(Get FASTA)	NCBI Sequence Viewer
	NP_620201	(Get FASTA)	NCBI Sequence Viewer
	XP_006256911	(Get FASTA)	NCBI Sequence Viewer
	XP_006256912	(Get FASTA)	NCBI Sequence Viewer
	XP_006256913	(Get FASTA)	NCBI Sequence Viewer
	XP_008771373	(Get FASTA)	NCBI Sequence Viewer
	XP_017457393	(Get FASTA)	NCBI Sequence Viewer
	XP_038955369	(Get FASTA)	NCBI Sequence Viewer
	XP_038955370	(Get FASTA)	NCBI Sequence Viewer
	XP_063135840	(Get FASTA)	NCBI Sequence Viewer
	XP_063135841	(Get FASTA)	NCBI Sequence Viewer
	XP_063135842	(Get FASTA)	NCBI Sequence Viewer
	XP_063135843	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA98020	(Get FASTA)	NCBI Sequence Viewer
	EDL90539	(Get FASTA)	NCBI Sequence Viewer
	EDL90540	(Get FASTA)	NCBI Sequence Viewer
	EDL90541	(Get FASTA)	NCBI Sequence Viewer
	EDL90542	(Get FASTA)	NCBI Sequence Viewer
	EDL90546	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006777
	ENSRNOP00000070988
	ENSRNOP00000090200
GenBank Protein	Q9JJK1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_620201 ⟸ NM_138846

- UniProtKB:

Q9JJK1 (UniProtKB/Swiss-Prot), E9PSV8 (UniProtKB/TrEMBL), A6K2I9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKPAMETAAEENTEQSQERKGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVA
ILEQHFSTNTSDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTAC
GRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQY
GIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFK
SREDCCPKF

hide sequence

RefSeq Acc Id:

XP_006256911 ⟸ XM_006256849

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYRPVPTLGDRAGPLSSPGCFE
CCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALLSEVIQLMQ
YVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFG
FSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAFPGKICGSALENICNTN
EFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQAYQDIKAKEEQELQDIQSRS
KEQLNSYT

hide sequence

RefSeq Acc Id:

XP_006256913 ⟸ XM_006256851

- Peptide Label:

isoform X7

- Sequence:

show sequence

MKPAMETAAEENTEQSQERKGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVA
ILEQHFSTNTSDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTAC
GRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQY
GIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDA
SKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT

hide sequence

RefSeq Acc Id:

XP_006256912 ⟸ XM_006256850

- Peptide Label:

isoform X3

- Sequence:

show sequence

MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYRPVPTLGDRAGPLSSPGCFE
CCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALLSEVIQLMQ
YVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFG
FSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAFPGKICGSALENICNTN
EFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSREDCCTKF

hide sequence

RefSeq Acc Id:

XP_008771373 ⟸ XM_008773151

- Peptide Label:

isoform X9

- Sequence:

show sequence

MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALLSEV
IQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAW
LGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAFPGKICGSALEN
ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQAYQDIKAKEEQELQD
IQSRSKEQLNSYT

hide sequence

RefSeq Acc Id:

XP_017457393 ⟸ XM_017601904

- Peptide Label:

isoform X4

- Sequence:

show sequence

MVNSRAEMEIGRYHWMYPGSKNHQYRPVPTLGDRAGPLSSPGCFECCIKCLGGVPYASLVATIL
CFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALLSEVIQLMQYVIYGIASFFFLYGIILLA
EGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVI
KSPQSNGTSGVEQICVDVRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGAT
VIALIHFLMILSSNWAYLKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT

hide sequence

Ensembl Acc Id:

ENSRNOP00000006777 ⟸ ENSRNOT00000006777

Ensembl Acc Id:

ENSRNOP00000070988 ⟸ ENSRNOT00000086721

RefSeq Acc Id:	XP_038955369 ⟸ XM_039099441
- Peptide Label:	isoform X2
- UniProtKB:	A6K2I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955370 ⟸ XM_039099442
- Peptide Label:	isoform X6
- UniProtKB:	Q9JJK1 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000097365 ⟸ ENSRNOT00000103098

Ensembl Acc Id:

ENSRNOP00000090200 ⟸ ENSRNOT00000118568

RefSeq Acc Id:	XP_063135841 ⟸ XM_063279771
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063135842 ⟸ XM_063279772
- Peptide Label:	isoform X10
- UniProtKB:	Q9JJK1 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063135840 ⟸ XM_063279770
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063135843 ⟸ XM_063279773
- Peptide Label:	isoform X11
- UniProtKB:	Q9JJK1 (UniProtKB/Swiss-Prot)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JJK1-F1-model_v2	AlphaFold	Q9JJK1	1-265	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701797

Promoter ID:

EPDNEW_R12314

Type:

initiation region

Name:

Gpm6b_1

Description:

glycoprotein m6b

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	29,648,350 - 29,648,410	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620580	AgrOrtholog
BioCyc Gene	G2FUF-2607	BioCyc
Ensembl Genes	ENSRNOG00000004613	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000006777	ENTREZGENE
	ENSRNOT00000086721	ENTREZGENE
	ENSRNOT00000118568	ENTREZGENE
InterPro	Myelin_PLP	UniProtKB/Swiss-Prot
	Myelin_PLP_CS	UniProtKB/Swiss-Prot
KEGG Report	rno:192179	UniProtKB/Swiss-Prot
NCBI Gene	192179	ENTREZGENE
PANTHER	NEURONAL MEMBRANE GLYCOPROTEIN M6-B	UniProtKB/Swiss-Prot
	PTHR11683	UniProtKB/Swiss-Prot
Pfam	Myelin_PLP	UniProtKB/Swiss-Prot
PhenoGen	Gpm6b	PhenoGen
PRINTS	MYELINPLP	UniProtKB/Swiss-Prot
PROSITE	MYELIN_PLP_1	UniProtKB/Swiss-Prot
	MYELIN_PLP_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000004613	RatGTEx
SMART	PLP	UniProtKB/Swiss-Prot
UniProt	A0A0G2JZB8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A9L3	ENTREZGENE, UniProtKB/TrEMBL
	A6K2I4	ENTREZGENE, UniProtKB/TrEMBL
	A6K2I6	ENTREZGENE, UniProtKB/TrEMBL
	A6K2I7	ENTREZGENE, UniProtKB/TrEMBL
	A6K2I8	ENTREZGENE, UniProtKB/TrEMBL
	A6K2I9	ENTREZGENE, UniProtKB/TrEMBL
	A6K2J0	ENTREZGENE, UniProtKB/TrEMBL
	E9PSV8	ENTREZGENE, UniProtKB/TrEMBL
	GPM6B_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-20	Gpm6b	glycoprotein m6b			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Gpm6b	glycoprotein m6b			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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