Gabrp (gamma-aminobutyric acid type A receptor subunit pi) - Rat Genome Database

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Gene: Gabrp (gamma-aminobutyric acid type A receptor subunit pi) Rattus norvegicus
Analyze
Symbol: Gabrp
Name: gamma-aminobutyric acid type A receptor subunit pi
RGD ID: 620532
Description: Enables GABA-gated chloride ion channel activity. Contributes to GABA-A receptor activity. Predicted to be involved in GABAergic synaptic transmission and chloride transmembrane transport. Located in plasma membrane. Orthologous to human GABRP (gamma-aminobutyric acid type A receptor subunit pi); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GABA(A) receptor subunit pi; GABA-A receptor pi subunit; GABAAR subunit pi; gamma-aminobutyric acid (GABA) A receptor, pi; gamma-aminobutyric acid (GABA-A) receptor, pi; gamma-aminobutyric acid A receptor, pi; gamma-aminobutyric acid receptor subunit pi; gamma-aminobutyric acid type A receptor pi subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81018,647,243 - 18,673,806 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1018,647,243 - 18,673,727 (-)EnsemblGRCr8
mRatBN7.21018,143,031 - 18,169,595 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1018,143,038 - 18,169,516 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1022,897,875 - 22,924,314 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01022,386,467 - 22,412,909 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01017,867,454 - 17,894,016 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1021,575,789 - 21,602,304 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1022,231,070 - 22,257,634 (-)NCBILyon_Normotensive
Lyon_Hypertensive1023,925,750 - 23,952,260 (-)NCBILyon_Hypertensive
F344_StmMcwi1023,912,251 - 23,938,813 (-)NCBIF344_StmMcwi
Rnor_6.01018,484,257 - 18,510,604 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1018,485,514 - 18,506,337 (-)Ensemblrn6Rnor6.0
Rnor_5.01018,370,401 - 18,391,074 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41018,454,555 - 18,474,564 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1017,782,069 - 17,803,609 (-)NCBICelera
RGSC_v3.11018,455,603 - 18,475,615 (-)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
choline  (ISO)
clothianidin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
cordycepin  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
D-glucose  (ISO)
DDT  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
finasteride  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fructose  (ISO)
furan  (EXP)
genistein  (ISO)
glucose  (ISO)
inulin  (ISO)
L-methionine  (ISO)
mercury dibromide  (ISO)
methotrexate  (ISO)
naphthalene  (ISO)
nickel atom  (ISO)
ozone  (ISO)
panobinostat  (ISO)
PCB138  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
progesterone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
tebuconazole  (ISO)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. A novel class of GABAA receptor subunit in tissues of the reproductive system. Hedblom E and Kirkness EF, J Biol Chem 1997 Jun 13;272(24):15346-50.
4. A novel function of ionotropic gamma-aminobutyric acid receptors involving alveolar fluid homeostasis. Jin N, etal., J Biol Chem. 2006 Nov 24;281(47):36012-20. doi: 10.1074/jbc.M606895200. Epub 2006 Sep 26.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15184050   PMID:17187413  


Genomics

Comparative Map Data
Gabrp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81018,647,243 - 18,673,806 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1018,647,243 - 18,673,727 (-)EnsemblGRCr8
mRatBN7.21018,143,031 - 18,169,595 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1018,143,038 - 18,169,516 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1022,897,875 - 22,924,314 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01022,386,467 - 22,412,909 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01017,867,454 - 17,894,016 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1021,575,789 - 21,602,304 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1022,231,070 - 22,257,634 (-)NCBILyon_Normotensive
Lyon_Hypertensive1023,925,750 - 23,952,260 (-)NCBILyon_Hypertensive
F344_StmMcwi1023,912,251 - 23,938,813 (-)NCBIF344_StmMcwi
Rnor_6.01018,484,257 - 18,510,604 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1018,485,514 - 18,506,337 (-)Ensemblrn6Rnor6.0
Rnor_5.01018,370,401 - 18,391,074 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41018,454,555 - 18,474,564 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1017,782,069 - 17,803,609 (-)NCBICelera
RGSC_v3.11018,455,603 - 18,475,615 (-)NCBI
Cytogenetic Map10q12NCBI
GABRP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385170,782,720 - 170,814,047 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5170,763,350 - 170,814,047 (+)Ensemblhg38GRCh38
GRCh375170,210,729 - 170,241,051 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365170,143,343 - 170,173,629 (+)NCBIBuild 36Build 36hg18NCBI36
Build 345170,143,342 - 170,173,626NCBI
Celera5166,242,778 - 166,273,110 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5165,308,447 - 165,338,808 (+)NCBIHuRef
CHM1_15169,643,250 - 169,673,563 (+)NCBICHM1_1
T2T-CHM13v2.05171,322,360 - 171,353,718 (+)NCBIT2T-CHM13v2.0
Gabrp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,500,781 - 33,528,978 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,500,781 - 33,528,959 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381133,550,781 - 33,578,978 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,550,781 - 33,578,959 (-)Ensemblmm10GRCm38
MGSCv371133,450,781 - 33,478,957 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361133,450,781 - 33,478,957 (-)NCBIMGSCv36mm8
Celera1135,963,998 - 35,992,141 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.21NCBI
Gabrp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540823,708,695 - 23,735,953 (+)Ensembl
ChiLan1.0NW_00495540823,708,770 - 23,735,953 (+)NCBIChiLan1.0ChiLan1.0
GABRP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24165,942,934 - 165,968,184 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15164,082,476 - 164,109,202 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05166,142,057 - 166,172,354 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15172,901,471 - 172,931,737 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5172,901,471 - 172,931,737 (+)EnsemblpanPan2panpan1.1
GABRP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1441,164,725 - 41,186,716 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl441,166,453 - 41,184,589 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha441,117,476 - 41,139,471 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0441,547,116 - 41,569,134 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl441,548,343 - 41,570,188 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1441,361,230 - 41,383,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0441,551,596 - 41,573,580 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0442,062,342 - 42,084,364 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gabrp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721395,376,607 - 95,399,943 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366094,100,955 - 4,122,569 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366094,100,562 - 4,122,569 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1653,205,553 - 53,228,714 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11653,205,616 - 53,228,765 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21657,477,149 - 57,500,257 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GABRP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12372,974,965 - 73,004,625 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2372,976,512 - 73,002,825 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660345,653,031 - 5,681,290 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabrp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473319,161,288 - 19,190,990 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473319,161,761 - 19,190,747 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gabrp
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v196,363,133 - 6,388,983 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gabrp
150 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:98
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000043036
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101577675460776754Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
737823Alc12Alcohol consumption QTL 124.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)101774978420796344Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)101803578263035782Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)101576223019737486Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
2298495Eae23Experimental allergic encephalomyelitis QTL 2316.93nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)101617552561175525Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101866841963668419Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101803578263035782Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 8 67 70 88 88 58 27 58 6 272 113 2 56 80 92 30 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000043036   ⟹   ENSRNOP00000048081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1018,647,243 - 18,673,727 (-)Ensembl
mRatBN7.2 Ensembl1018,143,038 - 18,169,516 (-)Ensembl
Rnor_6.0 Ensembl1018,485,514 - 18,506,337 (-)Ensembl
RefSeq Acc Id: NM_031029   ⟹   NP_112291
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,647,243 - 18,673,727 (-)NCBI
mRatBN7.21018,143,031 - 18,169,516 (-)NCBI
Dahl_SR_JrHsd1021,575,789 - 21,602,304 (-)NCBI
Lyon_Normotensive1022,231,070 - 22,257,634 (-)NCBI
Lyon_Hypertensive1023,925,750 - 23,952,260 (-)NCBI
F344_StmMcwi1023,912,251 - 23,938,813 (-)NCBI
Rnor_6.01018,485,514 - 18,506,337 (-)NCBI
Rnor_5.01018,370,401 - 18,391,074 (-)NCBI
RGSC_v3.41018,454,555 - 18,474,564 (-)RGD
Celera1017,782,069 - 17,803,609 (-)RGD
Sequence:
RefSeq Acc Id: XM_039086934   ⟹   XP_038942862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,647,247 - 18,673,806 (-)NCBI
mRatBN7.21018,144,039 - 18,169,595 (-)NCBI
Protein Sequences
Protein RefSeqs NP_112291 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942862 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC53255 (Get FASTA)   NCBI Sequence Viewer  
  EDM04073 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048081
  ENSRNOP00000048081.6
GenBank Protein O09028 (Get FASTA)   NCBI Sequence Viewer  
  QST76921 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_112291   ⟸   NM_031029
- Peptide Label: precursor
- UniProtKB: O09028 (UniProtKB/Swiss-Prot),   F1LM27 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048081   ⟸   ENSRNOT00000043036
RefSeq Acc Id: XP_038942862   ⟸   XM_039086934
- Peptide Label: isoform X1
Protein Domains
Neurotransmitter-gated ion-channel ligand-binding   Neurotransmitter-gated ion-channel transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O09028-F1-model_v2 AlphaFold O09028 1-440 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620532 AgrOrtholog
BioCyc Gene G2FUF-25598 BioCyc
Ensembl Genes ENSRNOG00000032417 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000043036 ENTREZGENE
  ENSRNOT00000043036.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.58.390 UniProtKB/Swiss-Prot
  2.70.170.10 UniProtKB/Swiss-Prot
InterPro GABAA/Glycine_rcpt UniProtKB/Swiss-Prot
  GABAAp_rcpt UniProtKB/Swiss-Prot
  GABAAR_pi_TM UniProtKB/Swiss-Prot
  Neur_chan_lig-bd UniProtKB/Swiss-Prot
  Neur_chan_lig-bd_sf UniProtKB/Swiss-Prot
  Neur_channel UniProtKB/Swiss-Prot
  Neuro-gated_channel_TM_sf UniProtKB/Swiss-Prot
  Neuro_actylchol_rec UniProtKB/Swiss-Prot
  Neurotrans-gated_channel_TM UniProtKB/Swiss-Prot
  Neurotransmitter_ion_chnl_CS UniProtKB/Swiss-Prot
KEGG Report rno:81658 UniProtKB/Swiss-Prot
NCBI Gene 81658 ENTREZGENE
PANTHER PTHR18945 UniProtKB/Swiss-Prot
Pfam Neur_chan_LBD UniProtKB/Swiss-Prot
  Neur_chan_memb UniProtKB/Swiss-Prot
PhenoGen Gabrp PhenoGen
PRINTS GABAARECEPTR UniProtKB/Swiss-Prot
  GABAARPI UniProtKB/Swiss-Prot
  NRIONCHANNEL UniProtKB/Swiss-Prot
PROSITE NEUROTR_ION_CHANNEL UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000032417 RatGTEx
Superfamily-SCOP SSF63712 UniProtKB/Swiss-Prot
  SSF90112 UniProtKB/Swiss-Prot
UniProt A6HDG8_RAT UniProtKB/TrEMBL
  F1LM27 ENTREZGENE, UniProtKB/TrEMBL
  GBRP_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-06 Gabrp  gamma-aminobutyric acid type A receptor subunit pi  Gabrp  gamma-aminobutyric acid type A receptor pi subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Gabrp  gamma-aminobutyric acid type A receptor pi subunit  Gabrp  gamma-aminobutyric acid (GABA-A) receptor, pi  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-22 Gabrp  gamma-aminobutyric acid (GABA-A) receptor, pi  Gabrp  gamma-aminobutyric acid A receptor, pi  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Gabrp  gamma-aminobutyric acid A receptor, pi    gamma-aminobutyric acid (GABA) A receptor, pi  Name updated 1299863 APPROVED
2004-12-14 Gabrp  gamma-aminobutyric acid (GABA) A receptor, pi    GABA-A receptor pi subunit  Name updated 1299863 APPROVED
2002-08-07 Gabrp  GABA-A receptor pi subunit      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in peripheral tissues, including the uterus 728637