Sult1d1 (sulfotransferase family 1D, member 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Sult1d1 (sulfotransferase family 1D, member 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Sult1d1
Name: sulfotransferase family 1D, member 1
RGD ID: 620491
Description: Predicted to enable aryl sulfotransferase activity. Predicted to be involved in sulfation. Predicted to act upstream of or within sulfate assimilation. Predicted to be active in cytoplasm; INTERACTS WITH ammonium chloride; bisphenol A; bromobenzene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dopamine sulfotransferase Sult1d1; N-sulfotransferase; ST1D1; sulfotransferase 1 family member D1; Sult-n; Sultn; tyrosine-ester sulfotransferase
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81420,720,430 - 20,755,495 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1420,721,079 - 20,755,495 (+)EnsemblGRCr8
mRatBN7.21420,441,135 - 20,476,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1420,441,924 - 20,476,341 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1420,630,128 - 20,664,549 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01421,949,041 - 21,983,464 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01420,704,459 - 20,738,873 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01422,107,418 - 22,126,011 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1422,091,777 - 22,126,021 (+)Ensemblrn6Rnor6.0
Rnor_5.01422,022,304 - 22,040,897 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41421,983,705 - 22,002,744 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1419,860,399 - 19,879,003 (+)NCBICelera
RGSC_v3.11421,983,712 - 22,002,744 (+)NCBI
Cytogenetic Map14p21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Information Derived from GenBank Report RGD, Sept. 2003

Genomics

Variants

.
Variants in Sult1d1
277 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:675
Count of miRNA genes:216
Interacting mature miRNAs:249
Transcripts:ENSRNOT00000060179, ENSRNOT00000072483
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14395787821572472Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141787564536079022Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14939329839411170Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141133490630674469Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141133471628389666Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14395787831121464Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141891545442433608Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14395787824886169Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141889519263895192Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141790672654251504Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141513759431238250Rat

Markers in Region
BE105744  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21420,474,973 - 20,475,124 (+)MAPPERmRatBN7.2
Rnor_6.01422,124,671 - 22,124,821NCBIRnor6.0
Rnor_5.01422,039,557 - 22,039,707UniSTSRnor5.0
RGSC_v3.41422,001,402 - 22,001,552UniSTSRGSC3.4
Celera1419,877,663 - 19,877,813UniSTS
RH 3.4 Map14283.39UniSTS
Cytogenetic Map14p21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 4 6 134 47 41 15 12 15 6 86 38 2 113 20 73 26 8 8

Sequence


Ensembl Acc Id: ENSRNOT00000060179   ⟹   ENSRNOP00000056924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1422,107,416 - 22,126,011 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000072483   ⟹   ENSRNOP00000066303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1420,721,079 - 20,755,495 (+)Ensembl
mRatBN7.2 Ensembl1420,441,924 - 20,476,341 (+)Ensembl
Rnor_6.0 Ensembl1422,091,777 - 22,126,021 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080114   ⟹   ENSRNOP00000072150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1422,107,427 - 22,124,786 (+)Ensembl
RefSeq Acc Id: NM_021769   ⟹   NP_068537
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81420,721,079 - 20,755,495 (+)NCBI
mRatBN7.21420,441,924 - 20,476,341 (+)NCBI
Rnor_6.01422,107,418 - 22,126,011 (+)NCBI
Rnor_5.01422,022,304 - 22,040,897 (+)NCBI
RGSC_v3.41421,983,705 - 22,002,744 (+)RGD
Celera1419,860,399 - 19,879,003 (+)RGD
Sequence:
RefSeq Acc Id: XM_039092368   ⟹   XP_038948296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81420,720,430 - 20,755,495 (+)NCBI
mRatBN7.21420,441,135 - 20,476,341 (+)NCBI
Protein Sequences
Protein RefSeqs NP_068537 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948296 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC99890 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000066303
  ENSRNOP00000066303.2
GenBank Protein G3V9R3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_068537   ⟸   NM_021769
- UniProtKB: G3V9R3 (UniProtKB/Swiss-Prot),   Q9Z1G0 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072150   ⟸   ENSRNOT00000080114
Ensembl Acc Id: ENSRNOP00000066303   ⟸   ENSRNOT00000072483
Ensembl Acc Id: ENSRNOP00000056924   ⟸   ENSRNOT00000060179
RefSeq Acc Id: XP_038948296   ⟸   XM_039092368
- Peptide Label: isoform X1
- UniProtKB: G3V9R3 (UniProtKB/Swiss-Prot),   Q9Z1G0 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9R3-F1-model_v2 AlphaFold G3V9R3 1-295 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620491 AgrOrtholog
BioCyc Gene G2FUF-16120 BioCyc
Ensembl Genes ENSRNOG00000001960 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000072483 ENTREZGENE
  ENSRNOT00000072483.3 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
InterPro P-loop_NTPase UniProtKB/Swiss-Prot
  Sulfotransferase_dom UniProtKB/Swiss-Prot
KEGG Report rno:60393 UniProtKB/Swiss-Prot
NCBI Gene 60393 ENTREZGENE
PANTHER SULFOTRANSFERASE SULT UniProtKB/Swiss-Prot
Pfam Sulfotransfer_1 UniProtKB/Swiss-Prot
PhenoGen Sult1d1 PhenoGen
RatGTEx ENSRNOG00000001960 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt G3V9R3 ENTREZGENE
  Q9Z1G0 ENTREZGENE
  ST1D1_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q9Z1G0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Sult1d1  sulfotransferase family 1D, member 1  Sultn  N-sulfotransferase  Symbol and Name updated 1299863 APPROVED
2004-02-11 Sultn  N-sulfotransferase  Sult-n  tyrosine-ester sulfotransferase  Symbol and Name updated to reflect Human and Mouse nomenclature 625702 APPROVED
2002-08-07 Sult-n  tyrosine-ester sulfotransferase      Symbol and Name status set to provisional 70820 PROVISIONAL