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Gene: Psd (pleckstrin and Sec7 domain containing) Rattus norvegicus

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Symbol:

Psd

Name:

pleckstrin and Sec7 domain containing

RGD ID:

620297

Description:

Predicted to enable guanyl-nucleotide exchange factor activity. Involved in maintenance of postsynaptic density structure; neuron differentiation; and regulation of postsynapse assembly. Is active in glutamatergic synapse. Orthologous to human PSD (pleckstrin and Sec7 domain containing); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

EFA6; exchange factor for ADP-ribosylation factor guanine nucleotide factor 6; exchange factor for ARF6; exchange factor for ARF6 A; PH and SEC7 domain-containing protein 1; pleckstrin homology and SEC7 domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PSD (pleckstrin and Sec7 domain containing)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Psd (pleckstrin and Sec7 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Psd (pleckstrin and Sec7 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PSD (pleckstrin and Sec7 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PSD (pleckstrin and Sec7 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Psd (pleckstrin and Sec7 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PSD (pleckstrin and Sec7 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PSD (pleckstrin and Sec7 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Psd (pleckstrin and Sec7 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Psd (pleckstrin and Sec7 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PSD (pleckstrin and Sec7 domain containing)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Psd (pleckstrin and Sec7 domain containing)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	efa-6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	efa-6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Efa6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Efa6	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	SYT1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Danio rerio (zebrafish):	psda	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	psda	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	psd	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	psd	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	255,114,703 - 255,130,151 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	255,114,703 - 255,129,553 (-)	Ensembl				GRCr8
mRatBN7.2	1	245,173,279 - 245,188,681 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	245,173,279 - 245,189,356 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	253,294,690 - 253,309,547 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	259,989,375 - 260,004,229 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	252,641,132 - 252,655,981 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	1	254,442,145 - 254,457,002 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	1	259,360,757 - 259,375,614 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	1	256,126,033 - 256,140,888 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	1	252,687,683 - 252,702,540 (-)	NCBI		F344_StmMcwi
Rnor_6.0	1	266,059,331 - 266,074,774 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	266,059,331 - 266,074,181 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	273,490,272 - 273,505,904 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	251,527,890 - 251,542,740 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	240,956,153 - 240,970,898 (-)	NCBI		Celera
RGSC_v3.1	1	251,791,506 - 251,803,196 (-)	NCBI
Cytogenetic Map	1	q54	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetylsalicylic acid (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

ammonium chloride (EXP)

benzo[a]pyrene (EXP,ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

buta-1,3-diene (ISO)

chlorohydrocarbon (EXP)

copper(II) sulfate (ISO)

Cuprizon (EXP)

diazinon (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

lead(0) (ISO)

methimazole (EXP)

methylmercury chloride (EXP)

N-methyl-4-phenylpyridinium (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

resveratrol (ISO)

S-nitrosoglutathione (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

Tesaglitazar (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (EXP,ISO)

trovafloxacin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

guanine nucleotide transmembrane transport (IEA)

guanine transport (TAS)

maintenance of postsynaptic density structure (IDA,IMP)

neuron differentiation (IEP)

neuron projection development (IEA,ISO)

regulation of ARF protein signal transduction (IEA)

regulation of postsynapse assembly (IDA,IMP)

vesicle-mediated transport (IBA)

Cellular Component

cell junction (IEA)

cleavage furrow (IEA,ISO,ISS)

dendritic spine (IEA,ISO)

glutamatergic synapse (IDA,IMP)

plasma membrane (IEA)

postsynaptic density (IEA,ISO)

postsynaptic density, intracellular component (IEA,ISO)

ruffle membrane (IBA,IEA,ISO,ISS)

Molecular Function

guanine nucleotide transmembrane transporter activity (TAS)

guanyl-nucleotide exchange factor activity (IBA,IEA,ISO,ISS)

phospholipid binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

endocytosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	ARF6 and EFA6A regulate the development and maintenance of dendritic spines.	Choi S, etal., J Neurosci. 2006 May 3;26(18):4811-9.
2.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Somatodendritic localization of the mRNA for EFA6A, a guanine nucleotide exchange protein for ARF6, in rat hippocampus and its involvement in dendritic formation.	Sakagami H, etal., Eur J Neurosci 2004 Feb;19(4):863-70.
8.	Localization of mRNAs for subfamily of guanine nucleotide-exchange proteins (GEP) for ARFs (ADP-ribosylation factors) in the brain of developing and mature rats under normal and postaxotomy conditions.	Suzuki I, etal., Brain Res Mol Brain Res 2002 Jan 31;98(1-2):41-50.

Additional References at PubMed

PMID:19494129	PMID:23603394	PMID:24261326	PMID:28935671	PMID:30053369	PMID:38725127

Genomics

Comparative Map Data

Psd
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	255,114,703 - 255,130,151 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	255,114,703 - 255,129,553 (-)	Ensembl				GRCr8
mRatBN7.2	1	245,173,279 - 245,188,681 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	245,173,279 - 245,189,356 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	253,294,690 - 253,309,547 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	259,989,375 - 260,004,229 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	252,641,132 - 252,655,981 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	1	254,442,145 - 254,457,002 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	1	259,360,757 - 259,375,614 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	1	256,126,033 - 256,140,888 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	1	252,687,683 - 252,702,540 (-)	NCBI		F344_StmMcwi
Rnor_6.0	1	266,059,331 - 266,074,774 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	266,059,331 - 266,074,181 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	273,490,272 - 273,505,904 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	251,527,890 - 251,542,740 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	240,956,153 - 240,970,898 (-)	NCBI		Celera
RGSC_v3.1	1	251,791,506 - 251,803,196 (-)	NCBI
Cytogenetic Map	1	q54	NCBI

PSD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	102,402,619 - 102,419,946 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	102,402,614 - 102,421,539 (-)	Ensembl			hg38	GRCh38
GRCh37	10	104,162,376 - 104,179,703 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	104,152,366 - 104,168,891 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	104,152,365 - 104,168,891	NCBI
Celera	10	97,903,264 - 97,919,799 (-)	NCBI		Celera
Cytogenetic Map	10	q24.32	NCBI
HuRef	10	97,795,548 - 97,812,875 (-)	NCBI		HuRef
CHM1_1	10	104,445,795 - 104,463,129 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	103,287,568 - 103,304,910 (-)	NCBI		T2T-CHM13v2.0

Psd
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	46,300,524 - 46,316,566 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	46,300,526 - 46,315,595 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	46,312,085 - 46,328,127 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	46,312,087 - 46,327,156 (-)	Ensembl			mm10	GRCm38
MGSCv37	19	46,386,577 - 46,401,646 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	46,365,398 - 46,380,467 (-)	NCBI		MGSCv36	mm8
Celera	19	47,075,302 - 47,090,371 (-)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	38.8	NCBI

Psd
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955485	7,979,654 - 7,994,662 (+)	Ensembl
ChiLan1.0	NW_004955485	7,979,654 - 7,994,662 (+)	NCBI	ChiLan1.0	ChiLan1.0

PSD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	114,290,121 - 114,307,440 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	114,295,443 - 114,312,762 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	99,006,102 - 99,023,411 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	102,472,001 - 102,488,881 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	102,472,583 - 102,486,226 (-)	Ensembl			panPan2	panpan1.1

PSD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	14,907,600 - 14,926,874 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	14,892,695 - 14,924,122 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	15,078,385 - 15,100,994 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	15,380,054 - 15,402,665 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	15,384,646 - 15,402,746 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	14,925,098 - 14,947,707 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	14,964,195 - 14,986,807 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	15,096,811 - 15,119,424 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Psd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	31,846,000 - 31,861,715 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936600	3,449,786 - 3,467,451 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936600	3,449,240 - 3,464,938 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PSD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	113,414,264 - 113,429,936 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	113,414,697 - 113,430,093 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	123,270,933 - 123,294,487 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PSD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	95,434,655 - 95,453,058 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	95,434,654 - 95,448,819 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	56,540,419 - 56,558,625 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Psd
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624831	1,809,518 - 1,823,318 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624831	1,810,372 - 1,823,708 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Psd
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	45,773,690 - 45,788,313 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Psd
68 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	146
Count of miRNA genes:	105
Interacting mature miRNAs:	128
Transcripts:	ENSRNOT00000026378
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1578775	Iddm21	Insulin dependent diabetes mellitus QTL 21	4.13		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	245782829	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	248619887	269633915	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	247133834	270518180	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	237995023	269633915	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
2316896	Gluco57	Glucose level QTL 57	7.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	238398865	255849249	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	228180243	255849249	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	241569529	269633915	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	243953669	270518180	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	66	159	80	79	48	84	48	6	332	181	10	139	79	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001439408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_134370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005491590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB040468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC096363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC096600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026378 ⟹ ENSRNOP00000026378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	255,114,703 - 255,129,553 (-)	Ensembl
mRatBN7.2 Ensembl	1	245,173,279 - 245,188,131 (-)	Ensembl
Rnor_6.0 Ensembl	1	266,059,331 - 266,074,181 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111594 ⟹ ENSRNOP00000094064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	255,114,703 - 255,121,436 (-)	Ensembl
mRatBN7.2 Ensembl	1	245,173,279 - 245,180,251 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117426 ⟹ ENSRNOP00000093417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	245,173,279 - 245,189,356 (-)	Ensembl

RefSeq Acc Id:

NM_134370 ⟹ NP_599197

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,114,703 - 255,129,553 (-)	NCBI
mRatBN7.2	1	245,173,279 - 245,188,131 (-)	NCBI
Dahl_SR_JrHsd	1	254,442,145 - 254,457,002 (-)	NCBI
Lyon_Normotensive	1	259,360,757 - 259,375,614 (-)	NCBI
Lyon_Hypertensive	1	256,126,033 - 256,140,888 (-)	NCBI
F344_StmMcwi	1	252,687,683 - 252,702,540 (-)	NCBI
Rnor_6.0	1	266,059,331 - 266,074,181 (-)	NCBI
Rnor_5.0	1	273,490,272 - 273,505,904 (-)	NCBI
RGSC_v3.4	1	251,527,890 - 251,542,740 (-)	RGD
Celera	1	240,956,153 - 240,970,898 (-)	RGD

Sequence:

show sequence

CGCGTGGGGTCTGGAGCAGGACAGGCGTATGCAGCTGGACCCTTCGTGTGGTTCAGGAGATGAT
GGACGAGAGAGAACTGAACACGAGTGGGGTGGGGCATATGAGGGTTTAGGGAACAGAACCAGGG
CTTTCTACATCCTCCCTTTCCTCTGCTGAGCGGGGCCCAGCCTCTCTGCCTCTCTTCGATTCCA
GCTCCTGACGAGCAGCGGCCTGTCTGAAGAGCATGCAGCCCCCTTACTCCCTGCCTGGCCTCGC
CATCCCTGCCCCCCCAGCCTGACCCCCGGCTCCAGCATGGCCCAGGGTGCCATGCGGTTCTGCT
CAGAAGGCGACTGTGCCATCTCCCCACCACGATGCCCTCGTCGCTGGCTCCCGGAAGGCCCAGT
GCCCCAAAGTCCCCCAGCCAGCATGTATGGCAGCACAGGATCCCTAATACGACGAGTGGTGGGC
CCAGGTCCTCGAGGCCGGGATCTGGGACGTGTGACAGCACCTTGTACCCCTCTGCGAGCCCCTC
CCTCACCCCATATAGCTCCCTCACCCTGGGGACCCTCTTCACCCACTGGGAAGCCCCCACCAGG
GGCACAGAGTTCTGTGGTCATCTTCCGTTTCGTGGAGAAGGCCAGTGTGAGGCCACTGAATGGC
CTACCTGCTTCTGGAGGCCTGAGTCGGAGCTGGGACCTGGGTGGGATTTCTCCCTCCAGGCCCA
CCCCAGCCCTTGGACCTGGCTGCAACCGGAAGTTGCGGCTAGAAGCGTCCACATCAGACCCACT
CCCAGCCGGAGGAGGCTCCGTTCTTCCTGGCAGCAGGGACCCCTCACGTGGGCCATTGATCCCA
CCCCAGATTGGGGCAGATGGCCTTTACTCCTCTCTCCCCAATGGGCTGGGGGGGACCCCTGAGC
ACTTGGTCATGCACTTCCGAGGACCTGCAGACACCGGATTTCTAAACCAGGGGGACACCTGGTC
CTCCCGGGAAGTCTCCTCTCATGCCCAGAGAATCGCTCGAGCCAAGTGGGAATTCTTCTATGGC
TCCTTGGACCCCCCCAGCTCAGGTGCTAAGCCCCCAGAGCAGGCCCTCCCATCACATGGGGTGG
GCTCCAAGCAAGGCTCTGGGGTAGCTGTGGGGCGAGCAGCCAAGTACTCCGAGACAGACCTGGA
CAAGGTACCCCTGAGGTGCTACCGAGAGACTGACATTGACGAGGTGCTGGCTGAGCGGGAGGAG
GCTGACTCCGCCATTGAGAGTCAGCCCAGCTCTGAGGGCCCCCCTGGCACTACCCAACCACCTG
CCTCACGACCCAGCCCATGCCCTGGTCCTTCTTCCAGTCTGGGCAGTGGTAACGGAGATGATGA
GGCAGGTGGTGAAGAGGACGTGGATGATGAGGTGTTTGAGGCCTCAGAGGGGGCCCGGCCAGGG
GACCACATGCCTCACTCTGGGCTCCTCAAGTCACCAGTCCCCTTTCTACCGGGGACCAGCCCCT
CAGCGGATGGGCCTGACTCTTTCAGTTGTATGTTTGAAGCCATCATGGAGTCGCACCGGGCCAA
GGGCACCTCCTATAGTAGCCTTGCCTCCCTGGAAGCTCTGGCCTCACCTGGCCCAACCCAGAGT
CCCTTCTTCACCTTTGAGATGCCTCCCCAACCCCCAGCTCCCCGGCCTGACCCACCTGCACCTG
CCCCACTTGCCCCTCTTGAACCGGATTCTGGTACCAGCTCTGTTGCTGATGGTCCTTGGACCCA
AAGGAGAGAGGTAGAAGAGTCAGATGCTGGGGCTACGCTGGCCCCAAGGAAAGAGCTTCCTAGT
CCCTCCCACTCTGAGGACAGCCTTGGGCTGGGGGCAGCACCCCTGGGCAGTGAACCGCCCCTGA
GCCAACTGGTGTCCGACTCAGACTCAGAGCTGGACAGCACAGAGCGGCTGGCCCTGGGAAGCAC
AGACACCTTGTCCAATGGACAGAAAGCAGATCTGGAGGCTGCACAGCGCCTAGCCAAGAGGCTA
TACCGACTTGATGGCTTCAGGAAGGCCGACGTAGCCCGGCATCTGGGCAAGAACAATGACTTCA
GCAAATTGGTGGCTGGCGAGTATCTCAAGTTTTTTGTCTTCACGGGCATGACCCTGGATCAAGC
TCTCAGGGTGTTTCTAAAGGAGCTGGCTTTAATGGGTGAGACCCAGGAGCGGGAGCGTGTACTG
GCCCACTTCTCCCAGCGATATTTCCAGTGTAATCCTGAAGCCCTGTCCTCAGAGGACGGCGCTC
ACACGCTGACCTGTGCTCTCATGCTCCTCAACACGGACCTCCACGGCCACAACATTGGGAAGCG
AATGACCTGTGGGGACTTCATCGGAAACCTGGAGGGCCTCAATGATGGCGGCGACTTCCCCAGG
GAGCTGCTCAAGGCCTTGTACAGCTCCATCAAGAATGAAAAGTTGCAATGGGCCATAGACGAGG
AGGAACTTCGGCGATCTCTGTCCGAGTTGGCCGACCCTAACCCCAAGGTCATCAAGAGGGTCAG
CGGAGGCAGCGGCAGCAGCTCCAGCCCCTTCCTGGACCTGACTCCCGAGCCTGGGGCAGCTGTC
TACAAGCACGGGGCCCTGGTGCGAAAGGTGCACGCAGACCCTGACTGCAGGAAGACACCTCGTG
GCAAGCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGGCATGATCCTCTACCTGCAGAAGGA
GGAGTACCAGCCCGGGAAGGCTCTTTCCGAGGCAGAGCTGAAGAACGCCATTAGCATTCACCAC
GCTCTGGCCACCCGCGCCAGCGACTACAGCAAGAGACCACACGTCTTCTACCTGCGCACAGCCG
ACTGGAGGGTCTTCCTCTTCCAGGCCCCGAGCCTGGAGCAAATGCAGTCCTGGATTACTCGCAT
CAATGTGGTGGCTGCCATGTTTTCTGCACCCCCCTTCCCAGCTGCTGTCAGTTCCCAGAAGAAA
TTCAGCCGTCCTCTGCTGCCCAGCGCTGCCACCCGCCTCTCCCAGGAGGAGCAGGTGAGGACTC
ACGAGGCCAAGCTGAAGGCCATGGCAAGCGAGCTTCGAGAGCACCGGGCAGCACATCTGGGGAA
GAAGGCCCGAGGCAAGGAGGCTGAGGAGCAGAGGCAGAAGGAGACCTACCTGGAGTTTGAGAAA
TCCCGCTATGGCACCTACGCGGCGCTGCTTCGAGTCAAGATGAAGGCCGCCAGCGAGGAGCTGG
ATGCCATAGAGGCAGCACTGGCCCAGGCTGGGAGCACGGAGGAAGGATGCCCTCCGCCTCACTC
CAGTCCTTCCCTGCAGCCCAACCCCACCAGCCAGCCCCGGGCTCAGCGTCCTGGCTCAGAAGCC
CGGGCCGGGGCAGGCAGTACAAGGCCAAAGCCCTGAGCAGGGAGTAGGAGCAATGGGGGCAGTG
CCTGCTGGGCACCTGCATGATGACATGGCCCCGCCTGAGCTCAGCTAGCCTCAGGCCAGCCACG
GGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAGC
CGGGCCTCAGAGCCTAGGCTGAGGGCCTCTCAGAGACCCCCTTTTTGTGATAATGTTTTGCACT
TTTTCGTACAGGAAGGGTGGGTAGGGTGGGAGGGGCCCACGCCCCTAATTTTTGATGGGGGTTT
CCTTTCCTTTTCTTTCTTTTTTCTTTTTCTTTTCTCTTCTTTTTCTTTTCTTTTTTTTTCTTTT
TTTTGTGGGTGGGGAGGCCTGATAAAGTTTCTGCTTTCTGCTGAGACCCCCCCACCCTTACACC
AGCAATACCCCTCCATCCTGGGGCCTGGCTCAGACAGAGGCCAGGAGTTGGGGCTGAGCTGGTC
CCCCTCTTTCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAAGGCGTCCATGCTG
AGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTCCTCTGGTGGGCCCTGCCCTTTG
TATAGCCTTCACCCTCATTAAAACTGCTCTGAATTGCTG

hide sequence

RefSeq Acc Id:

XM_006231432 ⟹ XP_006231494

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,114,703 - 255,130,151 (-)	NCBI
mRatBN7.2	1	245,173,279 - 245,188,681 (-)	NCBI
Rnor_6.0	1	266,059,331 - 266,074,774 (-)	NCBI
Rnor_5.0	1	273,490,272 - 273,505,904 (-)	NCBI

Sequence:

show sequence

TACGACAAATCTGGCGCTGTCCCCTTCAGCACCTCGCGGAACTCGCGCCACCCCTCCCCGCGCT
GAGCGGGGCCCAGCCTCTCTGCCTCTCTTCGATTCCAGCTCCTGACGAGCAGCGGCCTGTCTGA
AGAGCATGCAGCCCCCTTACTCCCTGCCTGGCCTCGCCATCCCTGCCCCCCCAGCCTGACCCCC
GGCTCCAGCATGGCCCAGGGTGCCATGCGGTTCTGCTCAGAAGGCGACTGTGCCATCTCCCCAC
CACGATGCCCTCGTCGCTGGCTCCCGGAAGGCCCAGTGCCCCAAAGTCCCCCAGCCAGCATGTA
TGGCAGCACAGGATCCCTAATACGACGAGTGGTGGGCCCAGGTCCTCGAGGCCGGGATCTGGGA
CGTGTGACAGCACCTTGTACCCCTCTGCGAGCCCCTCCCTCACCCCATATAGCTCCCTCACCCT
GGGGACCCTCTTCACCCACTGGGAAGCCCCCACCAGGGGCACAGAGTTCTGTGGTCATCTTCCG
TTTCGTGGAGAAGGCCAGTGTGAGGCCACTGAATGGCCTACCTGCTTCTGGAGGCCTGAGTCGG
AGCTGGGACCTGGGTGGGATTTCTCCCTCCAGGCCCACCCCAGCCCTTGGACCTGGCTGCAACC
GGAAGTTGCGGCTAGAAGCGTCCACATCAGACCCACTCCCAGCCGGAGGAGGCTCCGTTCTTCC
TGGCAGCAGGGACCCCTCACGTGGGCCATTGATCCCACCCCAGATTGGGGCAGATGGCCTTTAC
TCCTCTCTCCCCAATGGGCTGGGGGGGACCCCTGAGCACTTGGTCATGCACTTCCGAGGACCTG
CAGACACCGGATTTCTAAACCAGGGGGACACCTGGTCCTCCCGGGAAGTCTCCTCTCATGCCCA
GAGAATCGCTCGAGCCAAGTGGGAATTCTTCTATGGCTCCTTGGACCCCCCCAGCTCAGGTGCT
AAGCCCCCAGAGCAGGCCCTCCCATCACATGGGGTGGGCTCCAAGCAAGGCTCTGGGGTAGCTG
TGGGGCGAGCAGCCAAGTACTCCGAGACAGACCTGGACAAGGTACCCCTGAGGTGCTACCGAGA
GACTGACATTGACGAGGTGCTGGCTGAGCGGGAGGAGGCTGACTCCGCCATTGAGAGTCAGCCC
AGCTCTGAGGGCCCCCCTGGCACTACCCAACCACCTGCCTCACGACCCAGCCCATGCCCTGGTC
CTTCTTCCAGTCTGGGCAGTGGTAACGGAGATGATGAGGCAGGTGGTGAAGAGGACGTGGATGA
TGAGGTGTTTGAGGCCTCAGAGGGGGCCCGGCCAGGGGACCACATGCCTCACTCTGGGCTCCTC
AAGTCACCAGTCCCCTTTCTACCGGGGACCAGCCCCTCAGCGGATGGGCCTGACTCTTTCAGTT
GTATGTTTGAAGCCATCATGGAGTCGCACCGGGCCAAGGGCACCTCCTATAGTAGCCTTGCCTC
CCTGGAAGCTCTGGCCTCACCTGGCCCAACCCAGAGTCCCTTCTTCACCTTTGAGATGCCTCCC
CAACCCCCAGCTCCCCGGCCTGACCCACCTGCACCTGCCCCACTTGCCCCTCTTGAACCGGATT
CTGGTACCAGCTCTGTTGCTGATGGTCCTTGGACCCAAAGGAGAGAGGTAGAAGAGTCAGATGC
TGGGGCTACGCTGGCCCCAAGGAAAGAGCTTCCTAGTCCCTCCCACTCTGAGGACAGCCTTGGG
CTGGGGGCAGCACCCCTGGGCAGTGAACCGCCCCTGAGCCAACTGGTGTCCGACTCAGACTCAG
AGCTGGACAGCACAGAGCGGCTGGCCCTGGGAAGCACAGACACCTTGTCCAATGGACAGAAAGC
AGATCTGGAGGCTGCACAGCGCCTAGCCAAGAGGCTATACCGACTTGATGGCTTCAGGAAGGCC
GACGTAGCCCGGCATCTGGGCAAGAACAATGACTTCAGCAAATTGGTGGCTGGCGAGTATCTCA
AGTTTTTTGTCTTCACGGGCATGACCCTGGATCAAGCTCTCAGGGTGTTTCTAAAGGAGCTGGC
TTTAATGGGTGAGACCCAGGAGCGGGAGCGTGTACTGGCCCACTTCTCCCAGCGATATTTCCAG
TGTAATCCTGAAGCCCTGTCCTCAGAGGACGGCGCTCACACGCTGACCTGTGCTCTCATGCTCC
TCAACACGGACCTCCACGGCCACAACATTGGGAAGCGAATGACCTGTGGGGACTTCATCGGAAA
CCTGGAGGGCCTCAATGATGGCGGCGACTTCCCCAGGGAGCTGCTCAAGGCCTTGTACAGCTCC
ATCAAGAATGAAAAGTTGCAATGGGCCATAGACGAGGAGGAACTTCGGCGATCTCTGTCCGAGT
TGGCCGACCCTAACCCCAAGGTCATCAAGAGGGTCAGCGGAGGCAGCGGCAGCAGCTCCAGCCC
CTTCCTGGACCTGACTCCCGAGCCTGGGGCAGCTGTCTACAAGCACGGGGCCCTGGTGCGAAAG
GTGCACGCAGACCCTGACTGCAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGAGCTTCCACG
GGATCCTCAAGGGCATGATCCTCTACCTGCAGAAGGAGGAGTACCAGCCCGGGAAGGCTCTTTC
CGAGGCAGAGCTGAAGAACGCCATTAGCATTCACCACGCTCTGGCCACCCGCGCCAGCGACTAC
AGCAAGAGACCACACGTCTTCTACCTGCGCACAGCCGACTGGAGGGTCTTCCTCTTCCAGGCCC
CGAGCCTGGAGCAAATGCAGTCCTGGATTACTCGCATCAATGTGGTGGCTGCCATGTTTTCTGC
ACCCCCCTTCCCAGCTGCTGTCAGTTCCCAGAAGAAATTCAGCCGTCCTCTGCTGCCCAGCGCT
GCCACCCGCCTCTCCCAGGAGGAGCAGGTGAGGACTCACGAGGCCAAGCTGAAGGCCATGGCAA
GCGAGCTTCGAGAGCACCGGGCAGCACATCTGGGGAAGAAGGCCCGAGGCAAGGAGGCTGAGGA
GCAGAGGCAGAAGGAGACCTACCTGGAGTTTGAGAAATCCCGCTATGGCACCTACGCGGCGCTG
CTTCGAGTCAAGATGAAGGCCGCCAGCGAGGAGCTGGATGCCATAGAGGCAGCACTGGCCCAGG
CTGGGAGCACGGAGGAAGGATGCCCTCCGCCTCACTCCAGTCCTTCCCTGCAGCCCAACCCCAC
CAGCCAGCCCCGGGCTCAGCGTCCTGGCTCAGAAGCCCGGGCCGGGGCAGGCAGTACAAGGCCA
AAGCCCTGAGCAGGGAGTAGGAGCAATGGGGGCAGTGCCTGCTGGGCACCTGCATGATGACATG
GCCCCGCCTGAGCTCAGCTAGCCTCAGGCCAGCCACGGGGGCCTCCTGGTCCAGGGCCCGACCG
CGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAGCCGGGCCTCAGAGCCTAGGCTGAGGGCC
TCTCAGAGACCCCCTTTTTGTGATAATGTTTTGCACTTTTTCGTACAGGAAGGGTGGGTAGGGT
GGGAGGGGCCCACGCCCCTAATTTTTGATGGGGGTTTCCTTTCCTTTTCTTTCTTTTTTCTTTT
TCTTTTCTCTTCTTTTTCTTTTCTTTTTTTTTCTTTTTTTTGTGGGTGGGGAGGCCTGATAAAG
TTTCTGCTTTCTGCTGAGACCCCCCCACCCTTACACCAGCAATACCCCTCCATCCTGGGGCCTG
GCTCAGACAGAGGCCAGGAGTTGGGGCTGAGCTGGTCCCCCTCTTTCTCCCCAAGGGCTCACCT
CTCTCTTTGCAGAGACAGAGGAAAGGCGTCCATGCTGAGGCCCCATCCACAGGCTGGGGTGGCA
CGGCCTGCTTCCCTCCTCTGGTGGGCCCTGCCCTTTGTATAGCCTTCACCCTCATTAAAACTGC
TCTGAATTGCTG

hide sequence

RefSeq Acc Id:

XM_008760394 ⟹ XP_008758616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,114,703 - 255,129,943 (-)	NCBI
mRatBN7.2	1	245,173,279 - 245,188,525 (-)	NCBI
Rnor_6.0	1	266,059,331 - 266,074,345 (-)	NCBI

Sequence:

show sequence

GTGTTTAATACTGCATTTGCTTGATGTCCCTTCCATAGTTGGTCTTCTGGTTTTAGGGGGCGGG
TCCGATCTACTCCGTACCGTGTGCTTTGCGTGGCCGCGTGCTTGTGGGGGCGGGAGCGCGTGTG
GCATGTAACAGGTCATGTGGCAGCCTCCTAGGGACACGCGTGGGGTCTGGAGCAGGACAGGCGT
ATGCAGCTGGACCCTTCGTGTGGTTCAGGAGATGATGGACGAGAGAGAACTGAACACGAGTGGG
CTGAGCGGGGCCCAGCCTCTCTGCCTCTCTTCGATTCCAGCTCCTGACGAGCAGCGGCCTGTCT
GAAGAGCATGCAGCCCCCTTACTCCCTGCCTGGCCTCGCCATCCCTGCCCCCCCAGCCTGACCC
CCGGCTCCAGCATGGCCCAGGGTGCCATGCGGTTCTGCTCAGAAGGCGACTGTGCCATCTCCCC
ACCACGATGCCCTCGTCGCTGGCTCCCGGAAGGCCCAGTGCCCCAAAGTCCCCCAGCCAGCATG
TATGGCAGCACAGGATCCCTAATACGACGAGTGGTGGGCCCAGGTCCTCGAGGCCGGGATCTGG
GACGTGTGACAGCACCTTGTACCCCTCTGCGAGCCCCTCCCTCACCCCATATAGCTCCCTCACC
CTGGGGACCCTCTTCACCCACTGGGAAGCCCCCACCAGGGGCACAGAGTTCTGTGGTCATCTTC
CGTTTCGTGGAGAAGGCCAGTGTGAGGCCACTGAATGGCCTACCTGCTTCTGGAGGCCTGAGTC
GGAGCTGGGACCTGGGTGGGATTTCTCCCTCCAGGCCCACCCCAGCCCTTGGACCTGGCTGCAA
CCGGAAGTTGCGGCTAGAAGCGTCCACATCAGACCCACTCCCAGCCGGAGGAGGCTCCGTTCTT
CCTGGCAGCAGGGACCCCTCACGTGGGCCATTGATCCCACCCCAGATTGGGGCAGATGGCCTTT
ACTCCTCTCTCCCCAATGGGCTGGGGGGGACCCCTGAGCACTTGGTCATGCACTTCCGAGGACC
TGCAGACACCGGATTTCTAAACCAGGGGGACACCTGGTCCTCCCGGGAAGTCTCCTCTCATGCC
CAGAGAATCGCTCGAGCCAAGTGGGAATTCTTCTATGGCTCCTTGGACCCCCCCAGCTCAGGTG
CTAAGCCCCCAGAGCAGGCCCTCCCATCACATGGGGTGGGCTCCAAGCAAGGCTCTGGGGTAGC
TGTGGGGCGAGCAGCCAAGTACTCCGAGACAGACCTGGACAAGGTACCCCTGAGGTGCTACCGA
GAGACTGACATTGACGAGGTGCTGGCTGAGCGGGAGGAGGCTGACTCCGCCATTGAGAGTCAGC
CCAGCTCTGAGGGCCCCCCTGGCACTACCCAACCACCTGCCTCACGACCCAGCCCATGCCCTGG
TCCTTCTTCCAGTCTGGGCAGTGGTAACGGAGATGATGAGGCAGGTGGTGAAGAGGACGTGGAT
GATGAGGTGTTTGAGGCCTCAGAGGGGGCCCGGCCAGGGGACCACATGCCTCACTCTGGGCTCC
TCAAGTCACCAGTCCCCTTTCTACCGGGGACCAGCCCCTCAGCGGATGGGCCTGACTCTTTCAG
TTGTATGTTTGAAGCCATCATGGAGTCGCACCGGGCCAAGGGCACCTCCTATAGTAGCCTTGCC
TCCCTGGAAGCTCTGGCCTCACCTGGCCCAACCCAGAGTCCCTTCTTCACCTTTGAGATGCCTC
CCCAACCCCCAGCTCCCCGGCCTGACCCACCTGCACCTGCCCCACTTGCCCCTCTTGAACCGGA
TTCTGGTACCAGCTCTGTTGCTGATGGTCCTTGGACCCAAAGGAGAGAGGTAGAAGAGTCAGAT
GCTGGGGCTACGCTGGCCCCAAGGAAAGAGCTTCCTAGTCCCTCCCACTCTGAGGACAGCCTTG
GGCTGGGGGCAGCACCCCTGGGCAGTGAACCGCCCCTGAGCCAACTGGTGTCCGACTCAGACTC
AGAGCTGGACAGCACAGAGCGGCTGGCCCTGGGAAGCACAGACACCTTGTCCAATGGACAGAAA
GCAGATCTGGAGGCTGCACAGCGCCTAGCCAAGAGGCTATACCGACTTGATGGCTTCAGGAAGG
CCGACGTAGCCCGGCATCTGGGCAAGAACAATGACTTCAGCAAATTGGTGGCTGGCGAGTATCT
CAAGTTTTTTGTCTTCACGGGCATGACCCTGGATCAAGCTCTCAGGGTGTTTCTAAAGGAGCTG
GCTTTAATGGGTGAGACCCAGGAGCGGGAGCGTGTACTGGCCCACTTCTCCCAGCGATATTTCC
AGTGTAATCCTGAAGCCCTGTCCTCAGAGGACGGCGCTCACACGCTGACCTGTGCTCTCATGCT
CCTCAACACGGACCTCCACGGCCACAACATTGGGAAGCGAATGACCTGTGGGGACTTCATCGGA
AACCTGGAGGGCCTCAATGATGGCGGCGACTTCCCCAGGGAGCTGCTCAAGGCCTTGTACAGCT
CCATCAAGAATGAAAAGTTGCAATGGGCCATAGACGAGGAGGAACTTCGGCGATCTCTGTCCGA
GTTGGCCGACCCTAACCCCAAGGTCATCAAGAGGGTCAGCGGAGGCAGCGGCAGCAGCTCCAGC
CCCTTCCTGGACCTGACTCCCGAGCCTGGGGCAGCTGTCTACAAGCACGGGGCCCTGGTGCGAA
AGGTGCACGCAGACCCTGACTGCAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGAGCTTCCA
CGGGATCCTCAAGGGCATGATCCTCTACCTGCAGAAGGAGGAGTACCAGCCCGGGAAGGCTCTT
TCCGAGGCAGAGCTGAAGAACGCCATTAGCATTCACCACGCTCTGGCCACCCGCGCCAGCGACT
ACAGCAAGAGACCACACGTCTTCTACCTGCGCACAGCCGACTGGAGGGTCTTCCTCTTCCAGGC
CCCGAGCCTGGAGCAAATGCAGTCCTGGATTACTCGCATCAATGTGGTGGCTGCCATGTTTTCT
GCACCCCCCTTCCCAGCTGCTGTCAGTTCCCAGAAGAAATTCAGCCGTCCTCTGCTGCCCAGCG
CTGCCACCCGCCTCTCCCAGGAGGAGCAGGTGAGGACTCACGAGGCCAAGCTGAAGGCCATGGC
AAGCGAGCTTCGAGAGCACCGGGCAGCACATCTGGGGAAGAAGGCCCGAGGCAAGGAGGCTGAG
GAGCAGAGGCAGAAGGAGACCTACCTGGAGTTTGAGAAATCCCGCTATGGCACCTACGCGGCGC
TGCTTCGAGTCAAGATGAAGGCCGCCAGCGAGGAGCTGGATGCCATAGAGGCAGCACTGGCCCA
GGCTGGGAGCACGGAGGAAGGATGCCCTCCGCCTCACTCCAGTCCTTCCCTGCAGCCCAACCCC
ACCAGCCAGCCCCGGGCTCAGCGTCCTGGCTCAGAAGCCCGGGCCGGGGCAGGCAGTACAAGGC
CAAAGCCCTGAGCAGGGAGTAGGAGCAATGGGGGCAGTGCCTGCTGGGCACCTGCATGATGACA
TGGCCCCGCCTGAGCTCAGCTAGCCTCAGGCCAGCCACGGGGGCCTCCTGGTCCAGGGCCCGAC
CGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAGCCGGGCCTCAGAGCCTAGGCTGAGGG
CCTCTCAGAGACCCCCTTTTTGTGATAATGTTTTGCACTTTTTCGTACAGGAAGGGTGGGTAGG
GTGGGAGGGGCCCACGCCCCTAATTTTTGATGGGGGTTTCCTTTCCTTTTCTTTCTTTTTTCTT
TTTCTTTTCTCTTCTTTTTCTTTTCTTTTTTTTTCTTTTTTTTGTGGGTGGGGAGGCCTGATAA
AGTTTCTGCTTTCTGCTGAGACCCCCCCACCCTTACACCAGCAATACCCCTCCATCCTGGGGCC
TGGCTCAGACAGAGGCCAGGAGTTGGGGCTGAGCTGGTCCCCCTCTTTCTCCCCAAGGGCTCAC
CTCTCTCTTTGCAGAGACAGAGGAAAGGCGTCCATGCTGAGGCCCCATCCACAGGCTGGGGTGG
CACGGCCTGCTTCCCTCCTCTGGTGGGCCCTGCCCTTTGTATAGCCTTCACCCTCATTAAAACT
GCTCTGAATTGCTG

hide sequence

RefSeq Acc Id:

XM_008760396 ⟹ XP_008758618

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,114,703 - 255,130,138 (-)	NCBI
mRatBN7.2	1	245,173,279 - 245,188,679 (-)	NCBI
Rnor_6.0	1	266,059,331 - 266,074,686 (-)	NCBI

Sequence:

show sequence

ACATCCTCGCACCCTCTAGCCACCCGAATCGACCCTCTCTTCCTTCCCAGCTGAGCGGGGCCCA
GCCTCTCTGCCTCTCTTCGATTCCAGCTCCTGACGAGCAGCGGCCTGTCTGAAGAGCATGCAGC
CCCCTTACTCCCTGCCTGGCCTCGCCATCCCTGCCCCCCCAGCCTGACCCCCGGCTCCAGCATG
GCCCAGGGTGCCATGCGGTTCTGCTCAGAAGGCGACTGTGCCATCTCCCCACCACGATGCCCTC
GTCGCTGGCTCCCGGAAGGCCCAGTGCCCCAAAGTCCCCCAGCCAGCATGTATGGCAGCACAGG
ATCCCTAATACGACGAGTGGTGGGCCCAGGTCCTCGAGGCCGGGATCTGGGACGTGTGACAGCA
CCTTGTACCCCTCTGCGAGCCCCTCCCTCACCCCATATAGCTCCCTCACCCTGGGGACCCTCTT
CACCCACTGGGAAGCCCCCACCAGGGGCACAGAGTTCTGTGGTCATCTTCCGTTTCGTGGAGAA
GGCCAGTGTGAGGCCACTGAATGGCCTACCTGCTTCTGGAGGCCTGAGTCGGAGCTGGGACCTG
GGTGGGATTTCTCCCTCCAGGCCCACCCCAGCCCTTGGACCTGGCTGCAACCGGAAGTTGCGGC
TAGAAGCGTCCACATCAGACCCACTCCCAGCCGGAGGAGGCTCCGTTCTTCCTGGCAGCAGGGA
CCCCTCACGTGGGCCATTGATCCCACCCCAGATTGGGGCAGATGGCCTTTACTCCTCTCTCCCC
AATGGGCTGGGGGGGACCCCTGAGCACTTGGTCATGCACTTCCGAGGACCTGCAGACACCGGAT
TTCTAAACCAGGGGGACACCTGGTCCTCCCGGGAAGTCTCCTCTCATGCCCAGAGAATCGCTCG
AGCCAAGTGGGAATTCTTCTATGGCTCCTTGGACCCCCCCAGCTCAGGTGCTAAGCCCCCAGAG
CAGGCCCTCCCATCACATGGGGTGGGCTCCAAGCAAGGCTCTGGGGTAGCTGTGGGGCGAGCAG
CCAAGTACTCCGAGACAGACCTGGACAAGGTACCCCTGAGGTGCTACCGAGAGACTGACATTGA
CGAGGTGCTGGCTGAGCGGGAGGAGGCTGACTCCGCCATTGAGAGTCAGCCCAGCTCTGAGGGC
CCCCCTGGCACTACCCAACCACCTGCCTCACGACCCAGCCCATGCCCTGGTCCTTCTTCCAGTC
TGGGCAGTGGTAACGGAGATGATGAGGCAGGTGGTGAAGAGGACGTGGATGATGAGGTGTTTGA
GGCCTCAGAGGGGGCCCGGCCAGGGGACCACATGCCTCACTCTGGGCTCCTCAAGTCACCAGTC
CCCTTTCTACCGGGGACCAGCCCCTCAGCGGATGGGCCTGACTCTTTCAGTTGTATGTTTGAAG
CCATCATGGAGTCGCACCGGGCCAAGGGCACCTCCTATAGTAGCCTTGCCTCCCTGGAAGCTCT
GGCCTCACCTGGCCCAACCCAGAGTCCCTTCTTCACCTTTGAGATGCCTCCCCAACCCCCAGCT
CCCCGGCCTGACCCACCTGCACCTGCCCCACTTGCCCCTCTTGAACCGGATTCTGGTACCAGCT
CTGTTGCTGATGGTCCTTGGACCCAAAGGAGAGAGGTAGAAGAGTCAGATGCTGGGGCTACGCT
GGCCCCAAGGAAAGAGCTTCCTAGTCCCTCCCACTCTGAGGACAGCCTTGGGCTGGGGGCAGCA
CCCCTGGGCAGTGAACCGCCCCTGAGCCAACTGGTGTCCGACTCAGACTCAGAGCTGGACAGCA
CAGAGCGGCTGGCCCTGGGAAGCACAGACACCTTGTCCAATGGACAGAAAGCAGATCTGGAGGC
TGCACAGCGCCTAGCCAAGAGGCTATACCGACTTGATGGCTTCAGGAAGGCCGACGTAGCCCGG
CATCTGGGCAAGAACAATGACTTCAGCAAATTGGTGGCTGGCGAGTATCTCAAGTTTTTTGTCT
TCACGGGCATGACCCTGGATCAAGCTCTCAGGGTGTTTCTAAAGGAGCTGGCTTTAATGGGTGA
GACCCAGGAGCGGGAGCGTGTACTGGCCCACTTCTCCCAGCGATATTTCCAGTGTAATCCTGAA
GCCCTGTCCTCAGAGGACGGCGCTCACACGCTGACCTGTGCTCTCATGCTCCTCAACACGGACC
TCCACGGCCACAACATTGGGAAGCGAATGACCTGTGGGGACTTCATCGGAAACCTGGAGGGCCT
CAATGATGGCGGCGACTTCCCCAGGGAGCTGCTCAAGGCCTTGTACAGCTCCATCAAGAATGAA
AAGTTGCAATGGGCCATAGACGAGGAGGAACTTCGGCGATCTCTGTCCGAGTTGGCCGACCCTA
ACCCCAAGGTCATCAAGAGGGTCAGCGGAGGCAGCGGCAGCAGCTCCAGCCCCTTCCTGGACCT
GACTCCCGAGCCTGGGGCAGCTGTCTACAAGCACGGGGCCCTGGTGCGAAAGGTGCACGCAGAC
CCTGACTGCAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGG
GCATGATCCTCTACCTGCAGAAGGAGGAGTACCAGCCCGGGAAGGCTCTTTCCGAGGCAGAGCT
GAAGAACGCCATTAGCATTCACCACGCTCTGGCCACCCGCGCCAGCGACTACAGCAAGAGACCA
CACGTCTTCTACCTGCGCACAGCCGACTGGAGGGTCTTCCTCTTCCAGGCCCCGAGCCTGGAGC
AAATGCAGTCCTGGATTACTCGCATCAATGTGGTGGCTGCCATGTTTTCTGCACCCCCCTTCCC
AGCTGCTGTCAGTTCCCAGAAGAAATTCAGCCGTCCTCTGCTGCCCAGCGCTGCCACCCGCCTC
TCCCAGGAGGAGCAGGTGAGGACTCACGAGGCCAAGCTGAAGGCCATGGCAAGCGAGCTTCGAG
AGCACCGGGCAGCACATCTGGGGAAGAAGGCCCGAGGCAAGGAGGCTGAGGAGCAGAGGCAGAA
GGAGACCTACCTGGAGTTTGAGAAATCCCGCTATGGCACCTACGCGGCGCTGCTTCGAGTCAAG
ATGAAGGCCGCCAGCGAGGAGCTGGATGCCATAGAGGCAGCACTGGCCCAGGCTGGGAGCACGG
AGGAAGGATGCCCTCCGCCTCACTCCAGTCCTTCCCTGCAGCCCAACCCCACCAGCCAGCCCCG
GGCTCAGCGTCCTGGCTCAGAAGCCCGGGCCGGGGCAGGCAGTACAAGGCCAAAGCCCTGAGCA
GGGAGTAGGAGCAATGGGGGCAGTGCCTGCTGGGCACCTGCATGATGACATGGCCCCGCCTGAG
CTCAGCTAGCCTCAGGCCAGCCACGGGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGG
TGTCCGGGGCAGGGCAGGGCTGAGCCGGGCCTCAGAGCCTAGGCTGAGGGCCTCTCAGAGACCC
CCTTTTTGTGATAATGTTTTGCACTTTTTCGTACAGGAAGGGTGGGTAGGGTGGGAGGGGCCCA
CGCCCCTAATTTTTGATGGGGGTTTCCTTTCCTTTTCTTTCTTTTTTCTTTTTCTTTTCTCTTC
TTTTTCTTTTCTTTTTTTTTCTTTTTTTTGTGGGTGGGGAGGCCTGATAAAGTTTCTGCTTTCT
GCTGAGACCCCCCCACCCTTACACCAGCAATACCCCTCCATCCTGGGGCCTGGCTCAGACAGAG
GCCAGGAGTTGGGGCTGAGCTGGTCCCCCTCTTTCTCCCCAAGGGCTCACCTCTCTCTTTGCAG
AGACAGAGGAAAGGCGTCCATGCTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCC
CTCCTCTGGTGGGCCCTGCCCTTTGTATAGCCTTCACCCTCATTAAAACTGCTCTGAATTGCTG

hide sequence

RefSeq Acc Id:

XM_039089045 ⟹ XP_038944973

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,114,703 - 255,121,835 (-)	NCBI
mRatBN7.2	1	245,173,280 - 245,180,442 (-)	NCBI

RefSeq Acc Id:

XM_063275990 ⟹ XP_063132060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,114,703 - 255,129,943 (-)	NCBI

RefSeq Acc Id:

XM_063276038 ⟹ XP_063132108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,114,703 - 255,123,603 (-)	NCBI

RefSeq Acc Id:

XR_005491590

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,117,644 - 255,129,310 (-)	NCBI
mRatBN7.2	1	245,176,219 - 245,188,565 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001426337	(Get FASTA)	NCBI Sequence Viewer
	NP_599197	(Get FASTA)	NCBI Sequence Viewer
	XP_006231494	(Get FASTA)	NCBI Sequence Viewer
	XP_008758616	(Get FASTA)	NCBI Sequence Viewer
	XP_008758618	(Get FASTA)	NCBI Sequence Viewer
	XP_038944973	(Get FASTA)	NCBI Sequence Viewer
	XP_063132060	(Get FASTA)	NCBI Sequence Viewer
	XP_063132108	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB12573	(Get FASTA)	NCBI Sequence Viewer
	EDL94344	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026378
	ENSRNOP00000094064
GenBank Protein	Q9ESQ7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_599197 ⟸ NM_134370

- UniProtKB:

G3V8J5 (UniProtKB/TrEMBL), A6JHM0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAQGAMRFCSEGDCAISPPRCPRRWLPEGPVPQSPPASMYGSTGSLIRRVVGPGPRGRDLGRVT
APCTPLRAPPSPHIAPSPWGPSSPTGKPPPGAQSSVVIFRFVEKASVRPLNGLPASGGLSRSWD
LGGISPSRPTPALGPGCNRKLRLEASTSDPLPAGGGSVLPGSRDPSRGPLIPPQIGADGLYSSL
PNGLGGTPEHLVMHFRGPADTGFLNQGDTWSSREVSSHAQRIARAKWEFFYGSLDPPSSGAKPP
EQALPSHGVGSKQGSGVAVGRAAKYSETDLDKVPLRCYRETDIDEVLAEREEADSAIESQPSSE
GPPGTTQPPASRPSPCPGPSSSLGSGNGDDEAGGEEDVDDEVFEASEGARPGDHMPHSGLLKSP
VPFLPGTSPSADGPDSFSCMFEAIMESHRAKGTSYSSLASLEALASPGPTQSPFFTFEMPPQPP
APRPDPPAPAPLAPLEPDSGTSSVADGPWTQRREVEESDAGATLAPRKELPSPSHSEDSLGLGA
APLGSEPPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRLYRLDGFRKADVA
RHLGKNNDFSKLVAGEYLKFFVFTGMTLDQALRVFLKELALMGETQERERVLAHFSQRYFQCNP
EALSSEDGAHTLTCALMLLNTDLHGHNIGKRMTCGDFIGNLEGLNDGGDFPRELLKALYSSIKN
EKLQWAIDEEELRRSLSELADPNPKVIKRVSGGSGSSSSPFLDLTPEPGAAVYKHGALVRKVHA
DPDCRKTPRGKRGWKSFHGILKGMILYLQKEEYQPGKALSEAELKNAISIHHALATRASDYSKR
PHVFYLRTADWRVFLFQAPSLEQMQSWITRINVVAAMFSAPPFPAAVSSQKKFSRPLLPSAATR
LSQEEQVRTHEAKLKAMASELREHRAAHLGKKARGKEAEEQRQKETYLEFEKSRYGTYAALLRV
KMKAASEELDAIEAALAQAGSTEEGCPPPHSSPSLQPNPTSQPRAQRPGSEARAGAGSTRPKP

hide sequence

RefSeq Acc Id:	XP_006231494 ⟸ XM_006231432
- Peptide Label:	isoform X1
- UniProtKB:	G3V8J5 (UniProtKB/TrEMBL), A6JHM0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQGAMRFCSEGDCAISPPRCPRRWLPEGPVPQSPPASMYGSTGSLIRRVVGPGPRGRDLGRVT APCTPLRAPPSPHIAPSPWGPSSPTGKPPPGAQSSVVIFRFVEKASVRPLNGLPASGGLSRSWD LGGISPSRPTPALGPGCNRKLRLEASTSDPLPAGGGSVLPGSRDPSRGPLIPPQIGADGLYSSL PNGLGGTPEHLVMHFRGPADTGFLNQGDTWSSREVSSHAQRIARAKWEFFYGSLDPPSSGAKPP EQALPSHGVGSKQGSGVAVGRAAKYSETDLDKVPLRCYRETDIDEVLAEREEADSAIESQPSSE GPPGTTQPPASRPSPCPGPSSSLGSGNGDDEAGGEEDVDDEVFEASEGARPGDHMPHSGLLKSP VPFLPGTSPSADGPDSFSCMFEAIMESHRAKGTSYSSLASLEALASPGPTQSPFFTFEMPPQPP APRPDPPAPAPLAPLEPDSGTSSVADGPWTQRREVEESDAGATLAPRKELPSPSHSEDSLGLGA APLGSEPPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRLYRLDGFRKADVA RHLGKNNDFSKLVAGEYLKFFVFTGMTLDQALRVFLKELALMGETQERERVLAHFSQRYFQCNP EALSSEDGAHTLTCALMLLNTDLHGHNIGKRMTCGDFIGNLEGLNDGGDFPRELLKALYSSIKN EKLQWAIDEEELRRSLSELADPNPKVIKRVSGGSGSSSSPFLDLTPEPGAAVYKHGALVRKVHA DPDCRKTPRGKRGWKSFHGILKGMILYLQKEEYQPGKALSEAELKNAISIHHALATRASDYSKR PHVFYLRTADWRVFLFQAPSLEQMQSWITRINVVAAMFSAPPFPAAVSSQKKFSRPLLPSAATR LSQEEQVRTHEAKLKAMASELREHRAAHLGKKARGKEAEEQRQKETYLEFEKSRYGTYAALLRV KMKAASEELDAIEAALAQAGSTEEGCPPPHSSPSLQPNPTSQPRAQRPGSEARAGAGSTRPKP hide sequence

RefSeq Acc Id:	XP_008758618 ⟸ XM_008760396
- Peptide Label:	isoform X1
- UniProtKB:	G3V8J5 (UniProtKB/TrEMBL), A6JHM0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQGAMRFCSEGDCAISPPRCPRRWLPEGPVPQSPPASMYGSTGSLIRRVVGPGPRGRDLGRVT APCTPLRAPPSPHIAPSPWGPSSPTGKPPPGAQSSVVIFRFVEKASVRPLNGLPASGGLSRSWD LGGISPSRPTPALGPGCNRKLRLEASTSDPLPAGGGSVLPGSRDPSRGPLIPPQIGADGLYSSL PNGLGGTPEHLVMHFRGPADTGFLNQGDTWSSREVSSHAQRIARAKWEFFYGSLDPPSSGAKPP EQALPSHGVGSKQGSGVAVGRAAKYSETDLDKVPLRCYRETDIDEVLAEREEADSAIESQPSSE GPPGTTQPPASRPSPCPGPSSSLGSGNGDDEAGGEEDVDDEVFEASEGARPGDHMPHSGLLKSP VPFLPGTSPSADGPDSFSCMFEAIMESHRAKGTSYSSLASLEALASPGPTQSPFFTFEMPPQPP APRPDPPAPAPLAPLEPDSGTSSVADGPWTQRREVEESDAGATLAPRKELPSPSHSEDSLGLGA APLGSEPPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRLYRLDGFRKADVA RHLGKNNDFSKLVAGEYLKFFVFTGMTLDQALRVFLKELALMGETQERERVLAHFSQRYFQCNP EALSSEDGAHTLTCALMLLNTDLHGHNIGKRMTCGDFIGNLEGLNDGGDFPRELLKALYSSIKN EKLQWAIDEEELRRSLSELADPNPKVIKRVSGGSGSSSSPFLDLTPEPGAAVYKHGALVRKVHA DPDCRKTPRGKRGWKSFHGILKGMILYLQKEEYQPGKALSEAELKNAISIHHALATRASDYSKR PHVFYLRTADWRVFLFQAPSLEQMQSWITRINVVAAMFSAPPFPAAVSSQKKFSRPLLPSAATR LSQEEQVRTHEAKLKAMASELREHRAAHLGKKARGKEAEEQRQKETYLEFEKSRYGTYAALLRV KMKAASEELDAIEAALAQAGSTEEGCPPPHSSPSLQPNPTSQPRAQRPGSEARAGAGSTRPKP hide sequence

RefSeq Acc Id:

XP_008758616 ⟸ XM_008760394

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAQGAMRFCSEGDCAISPPRCPRRWLPEGPVPQSPPASMYGSTGSLIRRVVGPGPRGRDLGRVT
APCTPLRAPPSPHIAPSPWGPSSPTGKPPPGAQSSVVIFRFVEKASVRPLNGLPASGGLSRSWD
LGGISPSRPTPALGPGCNRKLRLEASTSDPLPAGGGSVLPGSRDPSRGPLIPPQIGADGLYSSL
PNGLGGTPEHLVMHFRGPADTGFLNQGDTWSSREVSSHAQRIARAKWEFFYGSLDPPSSGAKPP
EQALPSHGVGSKQGSGVAVGRAAKYSETDLDKVPLRCYRETDIDEVLAEREEADSAIESQPSSE
GPPGTTQPPASRPSPCPGPSSSLGSGNGDDEAGGEEDVDDEVFEASEGARPGDHMPHSGLLKSP
VPFLPGTSPSADGPDSFSCMFEAIMESHRAKGTSYSSLASLEALASPGPTQSPFFTFEMPPQPP
APRPDPPAPAPLAPLEPDSGTSSVADGPWTQRREVEESDAGATLAPRKELPSPSHSEDSLGLGA
APLGSEPPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRLYRLDGFRKADVA
RHLGKNNDFSKLVAGEYLKFFVFTGMTLDQALRVFLKELALMGETQERERVLAHFSQRYFQCNP
EALSSEDGAHTLTCALMLLNTDLHGHNIGKRMTCGDFIGNLEGLNDGGDFPRELLKALYSSIKN
EKLQWAIDEEELRRSLSELADPNPKVIKRVSGGSGSSSSPFLDLTPEPGAAVYKHGALVRKVHA
DPDCRKTPRGKRGWKSFHGILKGMILYLQKEEYQPGKALSEAELKNAISIHHALATRASDYSKR
PHVFYLRTADWRVFLFQAPSLEQMQSWITRINVVAAMFSAPPFPAAVSSQKKFSRPLLPSAATR
LSQEEQVRTHEAKLKAMASELREHRAAHLGKKARGKEAEEQRQKETYLEFEKSRYGTYAALLRV
KMKAASEELDAIEAALAQAGSTEEGCPPPHSSPSLQPNPTSQPRAQRPGSEARAGAGSTRPKP

hide sequence

Ensembl Acc Id:

ENSRNOP00000026378 ⟸ ENSRNOT00000026378

RefSeq Acc Id:	XP_038944973 ⟸ XM_039089045
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000094064 ⟸ ENSRNOT00000111594

Ensembl Acc Id:

ENSRNOP00000093417 ⟸ ENSRNOT00000117426

RefSeq Acc Id:	XP_063132060 ⟸ XM_063275990
- Peptide Label:	isoform X1
- UniProtKB:	A6JHM0 (UniProtKB/TrEMBL), G3V8J5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132108 ⟸ XM_063276038
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6GKK2 (UniProtKB/TrEMBL)

Protein Domains

PH SEC7

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9ESQ7-F1-model_v2	AlphaFold	Q9ESQ7	1-649	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620297	AgrOrtholog
BioCyc Gene	G2FUF-55517	BioCyc
Ensembl Genes	ENSRNOG00000019435	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000026378	ENTREZGENE
	ENSRNOT00000111594	ENTREZGENE
Gene3D-CATH	1.10.1000.11	UniProtKB/Swiss-Prot
	2.30.29.30	UniProtKB/Swiss-Prot
InterPro	PH-like_dom_sf	UniProtKB/Swiss-Prot
	PH_9	UniProtKB/Swiss-Prot
	PH_dom-spectrin-type	UniProtKB/Swiss-Prot
	PH_domain	UniProtKB/Swiss-Prot
	Sec7_C_sf	UniProtKB/Swiss-Prot
	Sec7_dom	UniProtKB/Swiss-Prot
	Sec7_dom_sf	UniProtKB/Swiss-Prot
NCBI Gene	171381	ENTREZGENE
PANTHER	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	UniProtKB/Swiss-Prot
	PH AND SEC7 DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	PH_9	UniProtKB/Swiss-Prot
	Sec7	UniProtKB/Swiss-Prot
PhenoGen	Psd	PhenoGen
PRINTS	SPECTRINPH	UniProtKB/Swiss-Prot
PROSITE	PH_DOMAIN	UniProtKB/Swiss-Prot
	SEC7	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000019435	RatGTEx
SMART	Sec7	UniProtKB/Swiss-Prot
	SM00233	UniProtKB/Swiss-Prot
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot
	SSF48425	UniProtKB/Swiss-Prot
UniProt	A0A8I6GKK2	ENTREZGENE, UniProtKB/TrEMBL
	A6JHM0	ENTREZGENE, UniProtKB/TrEMBL
	G3V8J5	ENTREZGENE, UniProtKB/TrEMBL
	PSD1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Psd	pleckstrin and Sec7 domain containing	EFA6	exchange factor for ARF6	Symbol and Name updated	1299863	APPROVED
2002-08-07	EFA6	exchange factor for ARF6			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in hippocampus and dentate gyrus	632586

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)