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Gene: Ppfia4 (PPFI scaffold protein A4) Rattus norvegicus

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Symbol:

Ppfia4

Name:

PPFI scaffold protein A4 (Ensembl:PTPRF interacting protein alpha 4)

RGD ID:

620055

Description:

Predicted to be involved in synapse organization. Predicted to be located in synapse. Predicted to be active in presynaptic active zone. Orthologous to human PPFIA4 (PPFI scaffold protein A4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC685423; liprin-alpha-4; LOC685423; protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4; PTPRF interacting protein alpha 4; PTPRF-interacting protein alpha-4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	48,305,844 - 48,354,329 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	48,305,848 - 48,354,279 (-)	Ensembl				GRCr8
mRatBN7.2	13	45,753,827 - 45,802,305 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	45,753,827 - 45,802,261 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	48,361,659 - 48,409,556 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	49,649,729 - 49,697,621 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	46,914,476 - 46,962,738 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	13	47,684,957 - 47,732,847 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	13	47,916,585 - 47,964,759 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	13	47,882,676 - 47,930,574 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	13	47,839,466 - 47,887,897 (-)	NCBI		F344_StmMcwi
Rnor_6.0	13	51,134,831 - 51,183,321 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	51,134,525 - 51,183,269 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	56,191,119 - 56,239,610 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	47,252,084 - 47,300,744 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	46,081,944 - 46,130,233 (-)	NCBI		Celera
RGSC_v3.1	13	47,266,851 - 47,298,660 (-)	NCBI
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-nonylphenol (ISO)

4-tert-Octylphenol (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

allethrin (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

Bisphenol Z (ISO)

bleomycin A2 (ISO)

butanal (ISO)

cannabidiol (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

cobalt atom (ISO)

cobalt dichloride (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

epoxiconazole (ISO)

esketamine (ISO)

ethanol (ISO)

fenvalerate (EXP)

flavonoids (EXP)

folic acid (ISO)

gemcitabine (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

hypochlorous acid (ISO)

lead(0) (ISO)

mercury dibromide (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

nickel dichloride (ISO)

okadaic acid (ISO)

ozone (ISO)

p-tert-Amylphenol (ISO)

paracetamol (EXP)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

propanal (ISO)

pyrethrins (EXP)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thapsigargin (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

Tungsten carbide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

synapse organization (IBA)

Cellular Component

cell surface (IEA)

cytoplasm (IEA)

glutamatergic synapse (ISO)

parallel fiber to Purkinje cell synapse (ISO)

presynapse (ISO)

presynaptic active zone (IBA)

synapse (IEA,ISO,ISS)

Molecular Function

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	RIM1alpha forms a protein scaffold for regulating neurotransmitter release at the active zone.	Schoch S, etal., Nature 2002 Jan 17;415(6869):321-6.
7.	Interaction between GRIP and liprin-alpha/SYD2 is required for AMPA receptor targeting.	Wyszynski M, etal., Neuron 2002 Mar 28;34(1):39-52.

Additional References at PubMed

PMID:12477932	PMID:12522103	PMID:12629171	PMID:14612982	PMID:21618221	PMID:21618222

Genomics

Comparative Map Data

Ppfia4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	48,305,844 - 48,354,329 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	48,305,848 - 48,354,279 (-)	Ensembl				GRCr8
mRatBN7.2	13	45,753,827 - 45,802,305 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	45,753,827 - 45,802,261 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	48,361,659 - 48,409,556 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	49,649,729 - 49,697,621 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	46,914,476 - 46,962,738 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	13	47,684,957 - 47,732,847 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	13	47,916,585 - 47,964,759 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	13	47,882,676 - 47,930,574 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	13	47,839,466 - 47,887,897 (-)	NCBI		F344_StmMcwi
Rnor_6.0	13	51,134,831 - 51,183,321 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	51,134,525 - 51,183,269 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	56,191,119 - 56,239,610 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	47,252,084 - 47,300,744 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	46,081,944 - 46,130,233 (-)	NCBI		Celera
RGSC_v3.1	13	47,266,851 - 47,298,660 (-)	NCBI
Cytogenetic Map	13	q13	NCBI

PPFIA4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	203,026,491 - 203,078,736 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	203,026,491 - 203,078,740 (+)	Ensembl			hg38	GRCh38
GRCh37	1	202,995,619 - 203,047,864 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	201,286,934 - 201,314,487 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	199,751,967 - 199,779,520	NCBI
Celera	1	176,149,565 - 176,177,122 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	174,185,942 - 174,213,472 (+)	NCBI		HuRef
CHM1_1	1	204,442,625 - 204,470,214 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	202,289,215 - 202,341,489 (+)	NCBI		T2T-CHM13v2.0

Ppfia4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	134,224,521 - 134,272,493 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	134,224,521 - 134,260,666 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	134,296,783 - 134,344,756 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	134,296,783 - 134,332,928 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	136,193,360 - 136,229,505 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	136,113,190 - 136,148,934 (-)	NCBI		MGSCv36	mm8
Celera	1	136,907,323 - 136,945,050 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	58.18	NCBI

Ppfia4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	39,047,019 - 39,092,597 (+)	Ensembl
ChiLan1.0	NW_004955406	39,047,069 - 39,094,663 (+)	NCBI	ChiLan1.0	ChiLan1.0

PPFIA4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	46,299,230 - 46,351,777 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	46,266,286 - 46,318,804 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	178,628,003 - 178,680,528 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	182,922,756 - 182,975,300 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	182,922,758 - 182,975,300 (+)	Ensembl			panPan2	panpan1.1

PPFIA4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	118,795 - 164,937 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	120,908 - 164,964 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	174,541 - 221,262 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	129,327 - 176,049 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	129,334 - 174,840 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	117,584 - 164,287 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	227,086 - 273,816 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	249,627 - 296,320 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ppfia4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	72,280,151 - 72,330,803 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	1,517,038 - 1,553,736 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	1,514,831 - 1,565,467 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPFIA4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	113,727,855 - 113,777,766 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	113,727,857 - 113,777,772 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	125,188,699 - 125,238,345 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PPFIA4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	26,274,388 - 26,327,507 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	26,276,014 - 26,305,025 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	27,050,300 - 27,104,334 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ppfia4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	7,759,616 - 7,793,560 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624807	7,757,385 - 7,807,797 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ppfia4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	1,346,447 - 1,392,589 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ppfia4
218 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	328
Count of miRNA genes:	194
Interacting mature miRNAs:	218
Transcripts:	ENSRNOT00000039540
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
6893344	Cm79	Cardiac mass QTL 79	1.5	0.04	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	46272922	51216694	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
4145117	Mcs27	Mammary carcinoma susceptibility QTL 27		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	13	45990077	50392939	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
12879472	Bp399	Blood pressure QTL 399			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	47780418	50392939	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

D13Hmgc23

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	51,181,922 - 51,182,122	NCBI	Rnor6.0
Rnor_5.0	13	56,238,270 - 56,238,470	UniSTS	Rnor5.0
RGSC_v3.4	13	47,299,404 - 47,299,604	UniSTS	RGSC3.4
Celera	13	46,128,882 - 46,129,093	UniSTS
Cytogenetic Map	13	q13	UniSTS

AI448359

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	45,755,446 - 45,755,663 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	51,136,451 - 51,136,667	NCBI	Rnor6.0
Rnor_5.0	13	56,192,739 - 56,192,955	UniSTS	Rnor5.0
RGSC_v3.4	13	47,253,704 - 47,253,920	UniSTS	RGSC3.4
Celera	13	46,083,564 - 46,083,780	UniSTS
Cytogenetic Map	13	q13	UniSTS

RH127096

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	48,307,526 - 48,307,768 (+)	Marker Load Pipeline
mRatBN7.2	13	45,755,504 - 45,755,747 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	51,136,509 - 51,136,751	NCBI	Rnor6.0
Rnor_5.0	13	56,192,797 - 56,193,039	UniSTS	Rnor5.0
RGSC_v3.4	13	47,253,762 - 47,254,004	UniSTS	RGSC3.4
Celera	13	46,083,622 - 46,083,864	UniSTS
Cytogenetic Map	13	q13	UniSTS

BF405092

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	45,801,304 - 45,801,471 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	51,182,306 - 51,182,472	NCBI	Rnor6.0
Rnor_5.0	13	56,238,654 - 56,238,820	UniSTS	Rnor5.0
RGSC_v3.4	13	47,299,788 - 47,299,954	UniSTS	RGSC3.4
Celera	13	46,129,277 - 46,129,443	UniSTS
RH 3.4 Map	13	170.8	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_080409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC117152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY057064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF285985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB584337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000039540 ⟹ ENSRNOP00000033209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	48,305,848 - 48,354,279 (-)	Ensembl
mRatBN7.2 Ensembl	13	45,753,827 - 45,802,261 (-)	Ensembl
Rnor_6.0 Ensembl	13	51,134,525 - 51,183,269 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098935 ⟹ ENSRNOP00000094172

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	48,309,999 - 48,354,279 (-)	Ensembl
mRatBN7.2 Ensembl	13	45,758,384 - 45,802,261 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108350 ⟹ ENSRNOP00000081918

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	48,305,848 - 48,354,279 (-)	Ensembl
mRatBN7.2 Ensembl	13	45,753,827 - 45,757,268 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115473 ⟹ ENSRNOP00000080414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	48,308,103 - 48,354,279 (-)	Ensembl
mRatBN7.2 Ensembl	13	45,755,421 - 45,802,261 (-)	Ensembl

RefSeq Acc Id:

NM_080409 ⟹ NP_536334

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,305,848 - 48,354,279 (-)	NCBI
mRatBN7.2	13	45,753,827 - 45,802,261 (-)	NCBI
Dahl_SR_JrHsd	13	47,684,957 - 47,732,847 (-)	NCBI
Lyon_Normotensive	13	47,916,585 - 47,964,759 (-)	NCBI
Lyon_Hypertensive	13	47,882,676 - 47,930,574 (-)	NCBI
F344_StmMcwi	13	47,839,466 - 47,887,897 (-)	NCBI
Rnor_6.0	13	51,134,831 - 51,183,262 (-)	NCBI
Rnor_5.0	13	56,191,119 - 56,239,610 (-)	NCBI
RGSC_v3.4	13	47,252,084 - 47,300,744 (-)	RGD
Celera	13	46,081,944 - 46,130,233 (-)	RGD

Sequence:

show sequence

GCTACCTTTGCGGGCTTGCCTCTAGGACGCTTCGCACTGCCGAGGTCGGGGGCGGCGCCCTGCT
GCTGCTGGCCTTCGGCGATTCCACACAGGGACACTGCAGGCCAGAGGCTCCTTTCAGAGCAAGA
GCAACTGATGCCATGGGAGAAGCCCCTACCCAACTGTCCACTTGCCTGGCACTGCCTTTTCTGA
GACCCACGCCCTGGGTCCTTCTGCAGGTGCCAACCCTGTGAGCTCCCTCCCACCCCCTGACCCG
ACACTGAGAAGCCTCTCTCCATTCCCATCATGTGTGAGGTGATGCCCACAATCAATGAGGGGGA
CCCTCTGGGGCCCCCCCACGGTGCCGATGCTGACGCCAACTTTGAGCAGTTGATGGTGAACATG
CTGGATGAGCGAGAGAAGTTGCTGGAGTCCCTTCGGGAGAGTCAGGAAACTTTGGTAGCCACAC
AGAGCCGGCTCCAAGATGCCCTTCACGAGCGAGACCAGCTCCAGCGCCACCTGAACTCTGCCCT
TCCCCAGGAATTTGCCACATTAACTCGGGAGCTAAGCATGTGTCGGGAGCAGCTTCTGGAGCGG
GAGGAAGAGATATCTGAGCTGAAAGCAGAACGGAATAACACTAGGCTGCTTCTGGAACATCTGG
AATGCCTCGTGTCCCGCCATGAGCGGTCATTGCGAATGACAGTGGTAAAACGCCAGGCCCAGTC
ACCTTCAGGTGTCTCCAGTGAGGTGGAGGTGCTGAAGGCCCTCAAGTCACTATTTGAGCACCAC
AAGGCCCTGGATGAGAAGGTTCGAGAGCGGCTCCGGGCAGCTCTAGAGCGAGTTACCACCTTGG
AGGAGCAGTTGGCAGGAGCTCACCAGCAGGTGTCTGCCCTGCAGCAGGGGGCAGGAATTCGGGA
TGGAGTGGCAGAAGAGGAAGAAACTGTGGATCTGGGACCAAAACGCCTGTGGAAAGATGACACT
GGCCGTGTGGAAGAACTGCAAGGGCTCTTGGAGAAGCAAAACTATGAGTTGAGCCAGGCCCGGG
AGCGGCTGGTCACCCTGAGTGCAACTGTGACTGAGCTTGAGGAGGACCTGGGCACAGCCCGCCG
AGACCTCATCAAGTCAGAGGAGCTGAGTGGCAAGCATCAGCGCGACCTCCGAGAGGCTCTGGCT
CAGAAGGAGGACATGGAAGAGCGAATCACCACCCTGGAGAAGCGCTACTTGGCTGCTCAGCGAG
AGGCCACATCCATCCATGACCTCAATGACAAACTGGAGAATGAGCTAGCCAACAAGGAGTCCCT
GCACCGCCAGTGTGAGGAGAAAGCCCGGCATCTGCAGGAGCTGTTGGAAGTGGCAGAGCAGAAG
CTGCAGCAGACCATGCGCAAGGCAGAGACCCTGCCAGAGGTGGAGGCCGAGCTGTCTCAGAGAA
TTGCAGCTCTCACCAAGGCTGAGGAACGTCATGGCAACATTGAGGAACATCTGCGGCAGCTGGA
AGGGCAGCTGGAGGAGAAGAACCAGGAGCTGGCAAGGGTGCGCCAGCGGGAGAAGATGAACGAG
GACCACAACAAGCGGCTGTCAGACACTGTGGACCGGTTGCTTAGTGAGTCCAACGAGCGCCTGC
AGCTCCACCTCAAGGAGCGAATGGCTGCCCTGGAGGAGAAGGGCCGTCTGTCTGAGGAGATTGA
GAAGCTTCGCCAAGAGGTGGACCAGCTGAAGGGTCGAGGGGGGCCGTTTGTGGATGGCATCCAC
TCCAGGTCACACGTGGGCAGTACAACAGATGTGCGGTTCTCACTGAGTACAGCCGCGCACGTGC
CTCCAGGTCTGCATCGTCGCTATACGGCTCTGAGGGAAGAGTCTGCCAAGGACTGGAAGCCGGC
ACCACTGCCGGGGGTGTTGGCTGCCACCACCACGCCTGCCTTTGACAGTGACCCTGAGATCTCC
GATGTGGACGAGGATGAGCCTGGTGGCTTGGTGGGCACTCAGGTTGATGTCATCTCACCTGGTG
GCCATTCTGATGCCCAAACCCTGGCCATGATGCTCCAGGAACAACTGGATGCCATCAACCAGGA
GATCAGGATGATTCAGGAGGAGAAGGAATCCACTGAGCTGCGTGCTGAAGAGATTGAGACCCGT
GTGACCAGCGGCAGCATGGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGGCTCCATCCCCA
CCTCTCTGACCGCCCTGTCCCTGGCCAGTGCATCTCCACCACTCAGTGGCCGCTCCACACCCAA
GCTCACTTCCAGAAGTGCTGCCCAGGACCTGGACCGAATGGGGGTCATGACCCTGCCCAGCGAC
TTAAGAAAGCATAGGAGGAAGCTGCTGTCGCCAGTGTCTCGGGAAGAGAACCGAGAGGATAAAG
CCACCATAAAATGTGAGACTTCTCCTCCTTCCTCACCCAGGACGCTGCGGCTAGAGAAGCTTGG
CCACCCTACCCTGAGTCAAGAAGAAGGCAAGAGTGCCTTGGAGGGCCAGGACAGCAACCCCAGC
AGCAGCAACAGCAGCCAGGACTCCCTGCACAAGGGCGCCAAGCGCAAGGGCATCAAGTCGTCCA
TTGGCCGCCTGTTTGGGAAGAAGGAGAAGGGCAGGCTGATCCACTTGAGTCGGGATGCCACAGG
CCATGTTCTGCTCACAGACTCCGAGCTCAGTCTGCAGGAACCAATGGTACCTGCCAAATTGGGG
ACCCAGGCAGAGAAGGACCGGCGACTGAAAAAGAAACACCAGCTGCTTGAAGATGCTCGCAGAA
AAGGAATGCCTTTTGCCCAATGGGATGGCCCCACGGTGGTCTCCTGGCTGGAGCTCTGGGTGGG
GATGCCTGCTTGGTATGTGGCGGCCTGCCGGGCCAATGTCAAGAGTGGAGCCATCATGTCTGCC
CTGTCAGACACGGAGATCCAGCGGGAGATCGGCATCAGCAATGCCCTGCACAGGCTCAAGCTCC
GCCTGGCCATCCAGGAGATGGTGTCACTGACGAGCCCCTCAGCCCCGCCTACCTCAAGGACATC
TTCAGGGAATGTCTGGGTGACCCACGAAGAGATGGAAACTCTGGCAACGTCTACCAAAACAGAC
AGTGAGGAGGGCAGTTGGGCCCAGACCCTGGCCTACGGAGATATGAATCACGAATGGATTGGAA
ATGAATGGCTGCCCAGCCTGGGGCTCCCTCAGTACCGCAGTTACTTCATGGAGTGCCTAGTGGA
TGCACGCATGCTGGATCACCTCACCAAGAAGGACCTGCGTGTCCACCTCAAGATGGTGGACAGT
TTCCATAGAACCAGTCTTCAGTATGGCATCATGTGTCTGAAGAGGCTGAACTATGACCGGAAGG
AGCTGGAGAAGAGGCGGGAAGAGAGCCAGCATGAGATCAAGGATGTGCTGGTCTGGACCAATGA
CCAGGTGGTTCACTGGGTCCAGTCCATAGGGCTAAGGGATTATGCCGGAAACCTACATGAAAGT
GGTGTGCATGGTGCCCTGCTGGCCTTGGATGAAAACTTCGACCACAACACATTGGCCTTGGTTC
TGCAGATCCCCACACAGAACACCCAGGCCCGCCAAGTGATGGAGAGAGAGTTCAATAACCTGTT
GGCCTTGGGCACAGACAGGAAATTGGATGACGGGGAAGAGAAGGTGTTCCGTCGAGCACCCTCC
TGGAGGAAACGCTTTCGGCCTCGGGATCACCATAGCGGTGGCATGTTGGGCACCTCAGCGGAGA
CCCTCCCTGCGGGCTTCCGTGTGTCCACCCTGGGTCCGCTGCAGCCTCCACCCGCCCCGCCCAA
CAAGATCATGCCGGAAGCTCACTCCCACTATCTCTACGGACACATGCTCTCCGCCTTCCGGGAC
TAGCCACGGCCCCCAGGGCGGGTGTCCTGGTTTCACAGGCTCAGCCGGCCCTGATCCTTCCTGC
TCGTTCCCTTTCTCCCTTGGCTCCCAGTCTCTCCTCTGTGACTTTCCAGTTGCCCAGGAACTCA
GAATATGCTCATCCAGTCCTTCGGCATCCCACTACCCGAGTCCTACTTCGTTCCCCCTTTGTAA
GTCTCTGGTGGATGTGGCCAAGGTCTCTGTGAGTGGCGGGCACCCAGGCTGTAGGTGCTTGAGA
TCCTGTGGGGGGAGGGAAGGACAGCACCGTGTGTGTGGCCACCTTCCCTCCTCCGGATCTGTTT
TGGTCTGAACTATGGGCTCATCAGGCTCAGAATCCTGGACCAAGGACTGAGATGACTCTTCCAA
TAAAAGGCCATTACGGACTCTGTCCTGCTTGGACTAATTGGCCTTCTGGTTCCCTCCACTCTGG
CAGTGCCGGACGGTCCGAATGGTTTTGCCACCCCCTCTCTCAATATCACTCCCTCCTCCCCAAA
CCCCATCATCAGTGTCTATAGCTCTTGCCTCCAAGTCTTGCTTGTGGGGCTAGGAGGGGTGTAG
AATACCCCAGTGCCCCTCTCCAGGACAAAGCCAAGAGGGGAATTGAGGAAGACTAAGGTAGAAA
CTCTGTGCCCAAGCCGACACAGAATCCCAAATGTGTGGGAGAAACGGACCCCAGAGCTTTGGTG
AGGGCAAGGGAAACTCTTCAGCTCCTTGCCTAGGGAGATAGCTTGGTAGCCTTTTGTACTTTTG
CCCAAAGGGCAGTGTGGGTGCCTCCAGCCCCAACCACAGATGGTGCTGCTACTGGATTGAGTGA
ATCAGACTGTGAACTGTTAACTCTGCCCTGAAGTGGGGGTACAGGGCTGGGGAAGTTTTCCCCT
TCAGTGAATCATGTCCCAGGTCTAGGAGATCTAAGGTGGACCGAGGCAGGCTCCCTTGTGTGCC
CCCATGCCCTCAAATCCACCTTTAGGGTTGGTTCTTTTGGGGCTACGGAGCAAACTACTCAAGA
AATTCTTGATCCCTTCTCTGTCTCCATTATTTTAATTGCTCTTTCTGGCAGCATGGTGGGGACA
GGGCAGATTTATGGGGAATATCAATCACTCTTCTCTTCTGGACCAATTTCTTAACCTTTGGAAA
GCTCAGGACCTAGTATCAGGGTGGGTGATAGAAGCTGGTAGTGGAAGAGGACAGGGAAGTGCTT
GGGCTGTGTTCGTGGTAGGGCAGTACAGTGCCGTCCTGGAGGTGATTGGAATAGCTGGTTTGCC
ATTTCATCACTGGGGTTCTGAACAGGGCCAGGCTGACAGGTGGAGAAACAAGCCAGAGCTCCCT
GTCTGAAAAGGACATAGAGCCTTGCGCTCAGCAGAGGGGAGCTTGGCTAATGGGGCGACCCAGT
GGGCTCCCATGGGCTGGGGCAGGCAACCACCCATCCTCAACCCCGTTGTTTCTGCCTTCCTACC
AGACAGACCTCTGGGGATGGAGAGAGAAACAGTTGAGTAGATCATGAGCTGATTAGAGAGAGAG
AACCCCTGATCCTGAATGCTGGAGTTACTGAGAAGGGCCAGCATCCTACGATGGAAAGAACCCA
GCATGGTCACACCGTCTGACTCCTTCTTGGGACTCTACGGGCTAGCTATGTGGGAGAGTCAGCC
CTGCCCCTCCTCTACCACAGAACCCTATCATGGTTTACAGTGACATAGGTAACAGTTGGGGAGC
CAGGTGCATTCAGGGTCAGTAGGCAGGACAAAATAGGGGACTCTACGTGCAGTGAGGAAAGGCT
GCCTTCACGGTGTAGCCTTGCCTCACTGTCAATATTTGTTTTCTCCGGAGAGTCACCAGTGACC
CAAGCTCTCCTTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTAATGGCTCAGT
GCTTCAGGAGTGGGTGTGCGAGTGTGTGTGTGAGTGTGTGTGGGTGTGAGTGGGTGTGTACGTA
CCAATAAACCTGGTTTTAAGACAATGTA

hide sequence

RefSeq Acc Id:

XM_039090289 ⟹ XP_038946217

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,323,535 - 48,354,323 (-)	NCBI
mRatBN7.2	13	45,771,520 - 45,789,743 (-)	NCBI

RefSeq Acc Id:

XM_039090290 ⟹ XP_038946218

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,323,535 - 48,354,323 (-)	NCBI
mRatBN7.2	13	45,771,519 - 45,802,305 (-)	NCBI

RefSeq Acc Id:

XM_063271975 ⟹ XP_063128045

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,308,103 - 48,354,329 (-)	NCBI

RefSeq Acc Id:

XM_063271976 ⟹ XP_063128046

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,305,844 - 48,354,323 (-)	NCBI

RefSeq Acc Id:

XM_063271977 ⟹ XP_063128047

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,308,103 - 48,354,323 (-)	NCBI

RefSeq Acc Id:

XM_063271978 ⟹ XP_063128048

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,305,844 - 48,354,323 (-)	NCBI

RefSeq Acc Id:

XR_005492195

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,323,000 - 48,354,323 (-)	NCBI
mRatBN7.2	13	45,770,980 - 45,802,305 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_536334	(Get FASTA)	NCBI Sequence Viewer
	XP_038946217	(Get FASTA)	NCBI Sequence Viewer
	XP_038946218	(Get FASTA)	NCBI Sequence Viewer
	XP_063128045	(Get FASTA)	NCBI Sequence Viewer
	XP_063128046	(Get FASTA)	NCBI Sequence Viewer
	XP_063128047	(Get FASTA)	NCBI Sequence Viewer
	XP_063128048	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92640	(Get FASTA)	NCBI Sequence Viewer
	AAL23695	(Get FASTA)	NCBI Sequence Viewer
	EDM09734	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033209
	ENSRNOP00000080414
	ENSRNOP00000081918
GenBank Protein	Q91Z80	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_536334 ⟸ NM_080409

- UniProtKB:

A0A8I6AIZ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCEVMPTINEGDPLGPPHGADADANFEQLMVNMLDEREKLLESLRESQETLVATQSRLQDALHE
RDQLQRHLNSALPQEFATLTRELSMCREQLLEREEEISELKAERNNTRLLLEHLECLVSRHERS
LRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEKVRERLRAALERVTTLEEQLAGAHQQ
VSALQQGAGIRDGVAEEEETVDLGPKRLWKDDTGRVEELQGLLEKQNYELSQARERLVTLSATV
TELEEDLGTARRDLIKSEELSGKHQRDLREALAQKEDMEERITTLEKRYLAAQREATSIHDLND
KLENELANKESLHRQCEEKARHLQELLEVAEQKLQQTMRKAETLPEVEAELSQRIAALTKAEER
HGNIEEHLRQLEGQLEEKNQELARVRQREKMNEDHNKRLSDTVDRLLSESNERLQLHLKERMAA
LEEKGRLSEEIEKLRQEVDQLKGRGGPFVDGIHSRSHVGSTTDVRFSLSTAAHVPPGLHRRYTA
LREESAKDWKPAPLPGVLAATTTPAFDSDPEISDVDEDEPGGLVGTQVDVISPGGHSDAQTLAM
MLQEQLDAINQEIRMIQEEKESTELRAEEIETRVTSGSMEALNLTQLRKRGSIPTSLTALSLAS
ASPPLSGRSTPKLTSRSAAQDLDRMGVMTLPSDLRKHRRKLLSPVSREENREDKATIKCETSPP
SSPRTLRLEKLGHPTLSQEEGKSALEGQDSNPSSSNSSQDSLHKGAKRKGIKSSIGRLFGKKEK
GRLIHLSRDATGHVLLTDSELSLQEPMVPAKLGTQAEKDRRLKKKHQLLEDARRKGMPFAQWDG
PTVVSWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNALHRLKLRLAIQEMVSL
TSPSAPPTSRTSSGNVWVTHEEMETLATSTKTDSEEGSWAQTLAYGDMNHEWIGNEWLPSLGLP
QYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYDRKELEKRREESQ
HEIKDVLVWTNDQVVHWVQSIGLRDYAGNLHESGVHGALLALDENFDHNTLALVLQIPTQNTQA
RQVMEREFNNLLALGTDRKLDDGEEKVFRRAPSWRKRFRPRDHHSGGMLGTSAETLPAGFRVST
LGPLQPPPAPPNKIMPEAHSHYLYGHMLSAFRD

hide sequence

Ensembl Acc Id:

ENSRNOP00000033209 ⟸ ENSRNOT00000039540

RefSeq Acc Id:	XP_038946218 ⟸ XM_039090290
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038946217 ⟸ XM_039090289
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000081918 ⟸ ENSRNOT00000108350

Ensembl Acc Id:

ENSRNOP00000080414 ⟸ ENSRNOT00000115473

Ensembl Acc Id:

ENSRNOP00000094172 ⟸ ENSRNOT00000098935

RefSeq Acc Id:	XP_063128048 ⟸ XM_063271978
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AIZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128046 ⟸ XM_063271976
- Peptide Label:	isoform X2
- UniProtKB:	A6ICB3 (UniProtKB/TrEMBL), F1M863 (UniProtKB/TrEMBL), A0A8I6AIZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128045 ⟸ XM_063271975
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZQL8 (UniProtKB/TrEMBL), A0A8I6AIZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128047 ⟸ XM_063271977
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AIZ8 (UniProtKB/TrEMBL)

Protein Domains

SAM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q91Z80-F1-model_v2	AlphaFold	Q91Z80	1-1043	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620055	AgrOrtholog
BioCyc Gene	G2FUF-18245	BioCyc
Ensembl Genes	ENSRNOG00000003494	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000039540	ENTREZGENE
	ENSRNOT00000108350	ENTREZGENE
	ENSRNOT00000115473	ENTREZGENE
Gene3D-CATH	1.10.150.50	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7316820	IMAGE-MGC_LOAD
InterPro	Liprin	UniProtKB/Swiss-Prot
	Liprin-alpha_SAM_rpt_1	UniProtKB/Swiss-Prot
	Liprin-alpha_SAM_rpt_2	UniProtKB/Swiss-Prot
	Liprin-alpha_SAM_rpt_3	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
	SAM/pointed_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:140592	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109376	IMAGE-MGC_LOAD
NCBI Gene	140592	ENTREZGENE
PANTHER	PTHR12587	UniProtKB/Swiss-Prot
	PTHR12587:SF5	UniProtKB/Swiss-Prot
Pfam	SAM_1	UniProtKB/Swiss-Prot
	SAM_2	UniProtKB/Swiss-Prot
PhenoGen	Ppfia4	PhenoGen
PROSITE	SAM_DOMAIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003494	RatGTEx
SMART	SAM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47769	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZQL8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZUF7_RAT	UniProtKB/TrEMBL
	A0A8I6AIZ8	ENTREZGENE, UniProtKB/TrEMBL
	A6ICB3	ENTREZGENE, UniProtKB/TrEMBL
	F1M863	ENTREZGENE, UniProtKB/TrEMBL
	LIPA4_RAT	UniProtKB/Swiss-Prot
	Q562A3_RAT	UniProtKB/TrEMBL
	Q91Z80	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-11-13	Ppfia4	PPFI scaffold protein A4	Ppfia4	PTPRF interacting protein alpha 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-17	Ppfia4	PTPRF interacting protein alpha 4	Ppfia4	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	Ppfia4	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	LOC685423	hypothetical protein LOC685423	Data merged from RGD:1593833	737654	PROVISIONAL
2006-11-20	LOC685423	hypothetical protein LOC685423			Symbol and Name status set to provisional	70820	PROVISIONAL
2004-02-26	Ppfia4	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Ppfia4	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_physical_interaction	binds to RIM-BPs, cyclic-AMP-GEFII, and Munc13-1	633666

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD