Cdh11 (cadherin 11) - Rat Genome Database

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Gene: Cdh11 (cadherin 11) Rattus norvegicus
Analyze
Symbol: Cdh11
Name: cadherin 11
RGD ID: 619742
Description: Predicted to enable beta-catenin binding activity and cadherin binding activity. Predicted to be involved in several processes, including aortic valve formation; calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; and cell junction assembly. Predicted to act upstream of or within several processes, including chordate embryonic development; fibroblast migration; and luteinization. Predicted to be located in cytoplasm and plasma membrane. Predicted to be part of catenin complex. Predicted to be active in Schaffer collateral - CA1 synapse; adherens junction; and glutamatergic synapse. Human ortholog(s) of this gene implicated in Elsahy-Waters syndrome and Teebi hypertelorism syndrome 2. Orthologous to human CDH11 (cadherin 11); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cadherin-11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,152,961 - 2,312,140 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl192,154,840 - 2,312,140 (+)EnsemblGRCr8
mRatBN7.2192,148,447 - 2,305,754 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl192,148,458 - 2,304,272 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx192,138,285 - 2,294,837 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,905,067 - 3,061,627 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,180,332 - 2,336,874 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0192,391,181 - 2,551,245 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl192,393,059 - 2,551,245 (+)Ensemblrn6Rnor6.0
Rnor_5.0192,372,260 - 2,531,571 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4192,225,209 - 2,382,805 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera192,130,072 - 2,287,470 (+)NCBICelera
RGSC_v3.1192,380,123 - 2,380,442 (+)NCBI
Cytogenetic Map19p14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3'-diindolylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (EXP)
aluminium oxide  (ISO)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloroprene  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dibutyl phthalate  (EXP,ISO)
diethyl maleate  (EXP)
diethylstilbestrol  (EXP)
diquat  (ISO)
disulfiram  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (EXP,ISO)
fenvalerate  (EXP)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
indole-3-methanol  (EXP)
isoprenaline  (ISO)
ketamine  (EXP)
lead diacetate  (EXP)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
lithium chloride  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-acetyl-L-cysteine  (EXP)
N-nitrosodiethylamine  (EXP)
niclosamide  (ISO)
nicotine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
perfluorooctanoic acid  (EXP)
picoxystrobin  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
propofol  (ISO)
pyrogallol  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sevoflurane  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Multiple cadherin superfamily members with unique expression profiles are produced in rat testis. Johnson KJ, etal., Endocrinology 2000 Feb;141(2):675-83.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10860580   PMID:12139922   PMID:21250828   PMID:22284184   PMID:23376485   PMID:23533145   PMID:23916685   PMID:24139451   PMID:25681337  


Genomics

Comparative Map Data
Cdh11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,152,961 - 2,312,140 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl192,154,840 - 2,312,140 (+)EnsemblGRCr8
mRatBN7.2192,148,447 - 2,305,754 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl192,148,458 - 2,304,272 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx192,138,285 - 2,294,837 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,905,067 - 3,061,627 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,180,332 - 2,336,874 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0192,391,181 - 2,551,245 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl192,393,059 - 2,551,245 (+)Ensemblrn6Rnor6.0
Rnor_5.0192,372,260 - 2,531,571 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4192,225,209 - 2,382,805 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera192,130,072 - 2,287,470 (+)NCBICelera
RGSC_v3.1192,380,123 - 2,380,442 (+)NCBI
Cytogenetic Map19p14NCBI
CDH11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381664,943,753 - 65,123,744 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1664,943,753 - 65,126,112 (-)Ensemblhg38GRCh38
GRCh371664,977,656 - 65,155,966 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361663,538,184 - 63,713,420 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341663,538,185 - 63,713,420NCBI
Celera1649,484,273 - 49,659,540 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1650,850,425 - 51,025,603 (-)NCBIHuRef
CHM1_11666,388,690 - 66,563,938 (-)NCBICHM1_1
T2T-CHM13v2.01670,732,330 - 70,912,379 (-)NCBIT2T-CHM13v2.0
Cdh11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398103,358,727 - 103,512,125 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8103,358,727 - 103,512,274 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388102,632,095 - 102,785,493 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8102,632,095 - 102,785,642 (-)Ensemblmm10GRCm38
MGSCv378105,156,895 - 105,309,011 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368105,522,124 - 105,674,205 (-)NCBIMGSCv36mm8
Celera8106,868,993 - 107,021,043 (-)NCBICelera
Cytogenetic Map8D1NCBI
cM Map850.44NCBI
Cdh11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543321,612,297 - 21,687,281 (-)Ensembl
ChiLan1.0NW_00495543321,613,909 - 21,770,968 (-)NCBIChiLan1.0ChiLan1.0
CDH11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21874,445,794 - 74,623,499 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11680,357,007 - 80,533,939 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01645,261,269 - 45,436,597 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11664,367,862 - 64,543,189 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1664,367,862 - 64,475,028 (-)EnsemblpanPan2panpan1.1
CDH11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1583,977,267 - 84,122,712 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl584,038,317 - 84,122,110 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha584,033,015 - 84,079,562 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0584,409,502 - 84,557,344 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl584,411,628 - 84,557,341 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1584,232,531 - 84,381,087 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0583,924,826 - 84,072,777 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0584,557,786 - 84,705,744 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdh11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934943,926,784 - 44,075,712 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647515,511,804 - 15,662,330 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647515,513,402 - 15,662,330 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl625,783,597 - 25,933,634 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1625,782,746 - 25,933,753 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2623,708,343 - 23,798,843 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDH11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1550,652,628 - 50,825,640 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl550,649,627 - 50,775,440 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604725,098,253 - 25,288,448 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdh11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474621,345,310 - 21,503,822 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474621,345,304 - 21,501,542 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cdh11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11710,994,489 - 11,149,179 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cdh11
949 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:391
Count of miRNA genes:216
Interacting mature miRNAs:275
Transcripts:ENSRNOT00000018535
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131969901Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124694445Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127361636Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat

Markers in Region
D19Rat34  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8192,194,317 - 2,194,573 (+)Marker Load Pipeline
mRatBN7.2192,187,927 - 2,188,183 (+)MAPPERmRatBN7.2
Rnor_6.0192,432,963 - 2,433,218NCBIRnor6.0
Rnor_5.0192,413,720 - 2,413,975UniSTSRnor5.0
RGSC_v3.4192,264,957 - 2,265,367RGDRGSC3.4
RGSC_v3.4192,265,038 - 2,265,293UniSTSRGSC3.4
Celera192,169,444 - 2,169,700UniSTS
RGSC_v3.1192,265,038 - 2,265,293RGD
RH 3.4 Map190.0RGD
RH 3.4 Map190.0UniSTS
RH 2.0 Map190.0RGD
SHRSP x BN Map190.0RGD
FHH x ACI Map190.0RGD
Cytogenetic Map19p14UniSTS
D19Got100  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0192,417,602 - 2,418,305NCBIRnor6.0
Rnor_5.0192,398,359 - 2,399,062UniSTSRnor5.0
RGSC_v3.4192,249,755 - 2,250,380UniSTSRGSC3.4
Cytogenetic Map19p14UniSTS
BE115484  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2192,292,399 - 2,292,552 (+)MAPPERmRatBN7.2
Rnor_6.0192,537,889 - 2,538,041NCBIRnor6.0
Rnor_5.0192,518,215 - 2,518,367UniSTSRnor5.0
RGSC_v3.4192,369,450 - 2,369,602UniSTSRGSC3.4
Celera192,274,117 - 2,274,269UniSTS
RH 3.4 Map190.0UniSTS
Cytogenetic Map19p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 35 59 6 299 135 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000018535   ⟹   ENSRNOP00000018535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl192,154,840 - 2,312,140 (+)Ensembl
mRatBN7.2 Ensembl192,148,458 - 2,304,272 (+)Ensembl
Rnor_6.0 Ensembl192,393,059 - 2,551,245 (+)Ensembl
RefSeq Acc Id: NM_053392   ⟹   NP_445844
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,154,840 - 2,312,140 (+)NCBI
mRatBN7.2192,148,447 - 2,305,754 (+)NCBI
Rnor_6.0192,393,059 - 2,551,245 (+)NCBI
Rnor_5.0192,372,260 - 2,531,571 (+)NCBI
RGSC_v3.4192,225,209 - 2,382,805 (+)RGD
Celera192,130,072 - 2,287,470 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255059   ⟹   XP_006255121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,200,561 - 2,310,662 (+)NCBI
mRatBN7.2192,194,173 - 2,305,750 (+)NCBI
Rnor_6.0192,437,105 - 2,549,767 (+)NCBI
Rnor_5.0192,372,260 - 2,531,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063278319   ⟹   XP_063134389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,152,961 - 2,310,662 (+)NCBI
Protein Sequences
Protein RefSeqs NP_445844 (Get FASTA)   NCBI Sequence Viewer  
  XP_006255121 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134389 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF87052 (Get FASTA)   NCBI Sequence Viewer  
  EDL87257 (Get FASTA)   NCBI Sequence Viewer  
  EDL87258 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018535
  ENSRNOP00000018535.3
RefSeq Acc Id: NP_445844   ⟸   NM_053392
- UniProtKB: F1MAH6 (UniProtKB/TrEMBL),   A6JXY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255121   ⟸   XM_006255059
- Peptide Label: isoform X1
- UniProtKB: F1MAH6 (UniProtKB/TrEMBL),   A6JXY0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018535   ⟸   ENSRNOT00000018535
RefSeq Acc Id: XP_063134389   ⟸   XM_063278319
- Peptide Label: isoform X1
- UniProtKB: F1MAH6 (UniProtKB/TrEMBL),   A6JXY0 (UniProtKB/TrEMBL)
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAH6-F1-model_v2 AlphaFold F1MAH6 1-796 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700916
Promoter ID:EPDNEW_R11440
Type:initiation region
Name:Cdh11_2
Description:cadherin 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11441  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0192,393,053 - 2,393,113EPDNEW
RGD ID:13700917
Promoter ID:EPDNEW_R11441
Type:single initiation site
Name:Cdh11_1
Description:cadherin 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11440  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0192,393,201 - 2,393,261EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619742 AgrOrtholog
BioCyc Gene G2FUF-6619 BioCyc
Ensembl Genes ENSRNOG00000013481 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018535 ENTREZGENE
  ENSRNOT00000018535.7 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin UniProtKB/TrEMBL
  Cadherin-like UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Catenin_binding_dom UniProtKB/TrEMBL
KEGG Report rno:84407 UniProtKB/TrEMBL
NCBI Gene 84407 ENTREZGENE
PANTHER CADHERIN-11 UniProtKB/TrEMBL
  PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PhenoGen Cdh11 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013481 RatGTEx
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin UniProtKB/TrEMBL
UniProt A6JXX9_RAT UniProtKB/TrEMBL
  A6JXY0 ENTREZGENE, UniProtKB/TrEMBL
  F1MAH6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Cdh11  cadherin 11    cadherin-11  Name updated 1299863 APPROVED
2002-08-07 Cdh11  cadherin-11      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in the testis 68759