Psma7 (proteasome 20S subunit alpha 7) - Rat Genome Database

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Gene: Psma7 (proteasome 20S subunit alpha 7) Rattus norvegicus
Analyze
Symbol: Psma7
Name: proteasome 20S subunit alpha 7
RGD ID: 61851
Description: Predicted to enable identical protein binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PSMA7 (proteasome 20S subunit alpha 7); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 2-nitrofluorene; 4,4'-sulfonyldiphenol; 4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alpha-4; MGC156537; proteasome (prosome, macropain) subunit, alpha type 7; proteasome subunit alpha 7; proteasome subunit alpha type-7; proteasome subunit alpha-4; proteasome subunit RC6-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,514,901 - 187,521,289 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3187,513,441 - 187,521,253 (-)EnsemblGRCr8
mRatBN7.23167,137,279 - 167,143,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,137,263 - 167,143,672 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3171,514,522 - 171,520,711 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03180,473,605 - 180,479,794 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,137,114 - 177,143,297 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03175,420,042 - 175,426,384 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,420,039 - 175,426,395 (-)Ensemblrn6Rnor6.0
Rnor_5.03181,692,298 - 181,698,641 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43169,100,807 - 169,107,149 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3165,436,256 - 165,442,444 (+)NCBICelera
RGSC_v3.13169,006,842 - 169,013,159 (-)NCBI
Cytogenetic Map3q43NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
1H-pyrazole  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-nitrofluorene  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
C60 fullerene  (EXP)
chlorpyrifos  (ISO)
clofibrate  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
hypochlorous acid  (ISO)
inulin  (ISO)
isoprenaline  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
nitrates  (ISO)
ozone  (ISO)
patulin  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenethyl caffeate  (EXP)
phenobarbital  (EXP)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
sulfasalazine  (EXP)
tanespimycin  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The proteasome alpha-subunit XAPC7 interacts specifically with Rab7 and late endosomes. Dong J, etal., J Biol Chem 2004 May 14;279(20):21334-42. Epub 2004 Mar 2.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Molecular cloning of two types of cDNA encoding subunit RC6-I of rat proteasomes. Ni R, etal., Biochim Biophys Acta 1995 Oct 17;1264(1):45-52.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Sun C, etal., Science. 2023 May 26;380(6647):eadf2018. doi: 10.1126/science.adf2018. Epub 2023 May 26.
Additional References at PubMed
PMID:12477932   PMID:12947022   PMID:15225636   PMID:15277470   PMID:16810255   PMID:16857966   PMID:17323924   PMID:17948026   PMID:20458337   PMID:20498273   PMID:21630459   PMID:22793692  
PMID:23376485   PMID:23533145   PMID:30133132   PMID:30361391  


Genomics

Comparative Map Data
Psma7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,514,901 - 187,521,289 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3187,513,441 - 187,521,253 (-)EnsemblGRCr8
mRatBN7.23167,137,279 - 167,143,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,137,263 - 167,143,672 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3171,514,522 - 171,520,711 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03180,473,605 - 180,479,794 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,137,114 - 177,143,297 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03175,420,042 - 175,426,384 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,420,039 - 175,426,395 (-)Ensemblrn6Rnor6.0
Rnor_5.03181,692,298 - 181,698,641 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43169,100,807 - 169,107,149 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3165,436,256 - 165,442,444 (+)NCBICelera
RGSC_v3.13169,006,842 - 169,013,159 (-)NCBI
Cytogenetic Map3q43NCBI
PSMA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,136,733 - 62,143,394 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,136,728 - 62,143,452 (-)Ensemblhg38GRCh38
GRCh372060,711,789 - 60,718,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,145,186 - 60,151,869 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342060,145,185 - 60,151,869NCBI
Celera2057,446,966 - 57,453,645 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2057,489,262 - 57,493,481 (-)NCBIHuRef
CHM1_12060,612,850 - 60,619,583 (-)NCBICHM1_1
T2T-CHM13v2.02063,927,604 - 63,934,261 (-)NCBIT2T-CHM13v2.0
Psma7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392179,678,160 - 179,684,257 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2179,678,167 - 179,684,226 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382180,036,367 - 180,042,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,036,374 - 180,042,433 (-)Ensemblmm10GRCm38
MGSCv372179,771,081 - 179,777,107 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362179,965,784 - 179,971,810 (-)NCBIMGSCv36mm8
Celera2184,120,963 - 184,127,008 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2102.55NCBI
Psma7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,883,938 - 1,888,882 (+)Ensembl
ChiLan1.0NW_0049555281,882,397 - 1,887,811 (+)NCBIChiLan1.0ChiLan1.0
PSMA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22167,918,126 - 67,924,848 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12067,911,241 - 67,918,017 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02058,502,446 - 58,509,175 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12059,822,545 - 59,826,804 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2059,822,545 - 59,826,802 (-)EnsemblpanPan2panpan1.1
PSMA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,182,344 - 46,186,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,182,420 - 46,186,079 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2445,419,604 - 45,424,931 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02447,039,071 - 47,044,386 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,039,078 - 47,044,368 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,140,666 - 46,145,984 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,263,612 - 46,268,935 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,017,870 - 47,023,195 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Psma7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,355,315 - 194,360,248 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365149,806,624 - 9,813,723 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365149,808,966 - 9,819,548 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,566,373 - 61,572,438 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11761,566,373 - 61,571,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21769,076,205 - 69,079,528 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMA7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.122,094,331 - 2,101,069 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl22,094,455 - 2,100,936 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605050,044,223 - 50,050,960 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psma7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,011,606 - 28,017,130 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474128,011,606 - 28,017,059 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Psma7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15157,122,572 - 157,129,966 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:125
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000011724
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3181611379189428310Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat

Markers in Region
RH136620  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83187,514,966 - 187,515,544 (+)Marker Load Pipeline
mRatBN7.23167,137,341 - 167,137,920 (+)MAPPERmRatBN7.2
Rnor_6.03175,420,105 - 175,420,683NCBIRnor6.0
Rnor_5.03181,698,000 - 181,698,578UniSTSRnor5.0
RGSC_v3.43169,100,870 - 169,101,448UniSTSRGSC3.4
Celera3165,441,803 - 165,442,381UniSTS
Cytogenetic Map3q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000082686   ⟹   ENSRNOP00000071611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3187,514,903 - 187,521,253 (-)Ensembl
mRatBN7.2 Ensembl3167,137,280 - 167,143,672 (-)Ensembl
Rnor_6.0 Ensembl3175,420,039 - 175,426,395 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095041   ⟹   ENSRNOP00000078026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3187,515,344 - 187,521,253 (-)Ensembl
mRatBN7.2 Ensembl3167,137,720 - 167,143,650 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106991   ⟹   ENSRNOP00000087849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3187,513,441 - 187,521,253 (-)Ensembl
mRatBN7.2 Ensembl3167,137,263 - 167,143,672 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116159   ⟹   ENSRNOP00000097117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3187,514,903 - 187,521,253 (-)Ensembl
mRatBN7.2 Ensembl3167,137,280 - 167,143,672 (-)Ensembl
RefSeq Acc Id: NM_001008217   ⟹   NP_001008218
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,514,903 - 187,521,246 (-)NCBI
mRatBN7.23167,137,279 - 167,143,626 (-)NCBI
Rnor_6.03175,420,042 - 175,426,384 (-)NCBI
Rnor_5.03181,692,298 - 181,698,641 (+)NCBI
RGSC_v3.43169,100,807 - 169,107,149 (-)RGD
Celera3165,436,256 - 165,442,444 (+)RGD
Sequence:
RefSeq Acc Id: XM_063283532   ⟹   XP_063139602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,514,901 - 187,521,289 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001008218 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139602 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI27467 (Get FASTA)   NCBI Sequence Viewer  
  EDL88834 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071611
GenBank Protein P48004 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001008218   ⟸   NM_001008217
- UniProtKB: A0A0G2K0W9 (UniProtKB/TrEMBL),   A6KMC7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071611   ⟸   ENSRNOT00000082686
Ensembl Acc Id: ENSRNOP00000097117   ⟸   ENSRNOT00000116159
Ensembl Acc Id: ENSRNOP00000078026   ⟸   ENSRNOT00000095041
Ensembl Acc Id: ENSRNOP00000087849   ⟸   ENSRNOT00000106991
RefSeq Acc Id: XP_063139602   ⟸   XM_063283532
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A6N6 (UniProtKB/TrEMBL),   A0A8I5Y830 (UniProtKB/TrEMBL)
Protein Domains
Proteasome alpha-type subunits

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P48004-F1-model_v2 AlphaFold P48004 1-254 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692728
Promoter ID:EPDNEW_R3253
Type:initiation region
Name:Psma7_1
Description:proteasome subunit alpha 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03175,426,376 - 175,426,436EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61851 AgrOrtholog
BioCyc Gene G2FUF-46373 BioCyc
Ensembl Genes ENSRNOG00000056853 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000082686 ENTREZGENE
Gene3D-CATH 3.60.20.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7381383 IMAGE-MGC_LOAD
InterPro Ntn_hydrolases_N UniProtKB/Swiss-Prot
  Proteasome_alpha UniProtKB/Swiss-Prot
  Proteasome_alpha-type UniProtKB/Swiss-Prot
  Proteasome_asu_N UniProtKB/Swiss-Prot
  Proteasome_sua/b UniProtKB/Swiss-Prot
MGC_CLONE MGC:156537 IMAGE-MGC_LOAD
NCBI Gene 29674 ENTREZGENE
PANTHER PROTEASOME SUBUNIT ALPHA/BETA UniProtKB/Swiss-Prot
Pfam Proteasome UniProtKB/Swiss-Prot
  Proteasome_A_N UniProtKB/Swiss-Prot
PhenoGen Psma7 PhenoGen
PROSITE PROTEASOME_ALPHA_1 UniProtKB/Swiss-Prot
  PROTEASOME_ALPHA_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000056853 RatGTEx
SMART Proteasome_A_N UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56235 UniProtKB/Swiss-Prot
UniProt A0A0G2K0W9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y830 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6N6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ASC7_RAT UniProtKB/TrEMBL
  A0JPK2_RAT UniProtKB/TrEMBL
  A6KMC7 ENTREZGENE, UniProtKB/TrEMBL
  P48004 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Psma7  proteasome 20S subunit alpha 7  Psma7  proteasome subunit alpha 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-08-19 Psma7  proteasome subunit alpha 7  Psma7  proteasome (prosome, macropain) subunit, alpha type 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Psma7  proteasome (prosome, macropain) subunit, alpha type 7      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference