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Gene: Psma3 (proteasome 20S subunit alpha 3) Rattus norvegicus

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Symbol:

Psma3

Name:

proteasome 20S subunit alpha 3

RGD ID:

61844

Description:

Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PSMA3 (proteasome 20S subunit alpha 3); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,2,4-trimethylbenzene; 1,3-dinitrobenzene; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

alpha-7; macropain subunit C8; multicatalytic endopeptidase complex subunit C8; multicatalytic proteinase subunit K; proteasome (prosome, macropain) subunit, alpha type 3; proteasome component C8; proteasome subunit alpha 3; proteasome subunit alpha type 3-like; proteasome subunit alpha type-3; proteasome subunit alpha-7; proteasome subunit C8; proteasome subunit K; Psma3l

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PSMA3 (proteasome 20S subunit alpha 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Psma3 (proteasome subunit alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Psma3 (proteasome 20S subunit alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PSMA3 (proteasome 20S subunit alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PSMA3 (proteasome 20S subunit alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Psma3 (proteasome 20S subunit alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PSMA3 (proteasome 20S subunit alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PSMA3 (proteasome 20S subunit alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Psma3 (proteasome 20S subunit alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Psma3 (proteasome 20S subunit alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Psma3 (proteasome subunit alpha 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PSMA3 (proteasome 20S subunit alpha 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	psma3 (proteasome subunit alpha 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PRE10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Prosalpha7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pas-7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pas-7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	psma3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	psma3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	95,219,714 - 95,239,745 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	95,219,629 - 95,241,032 (+)	Ensembl				GRCr8
mRatBN7.2	6	89,483,741 - 89,503,775 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	89,483,727 - 89,504,965 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	89,868,034 - 89,888,332 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	90,167,503 - 90,187,803 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	89,606,993 - 89,627,292 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	93,423,029 - 93,444,223 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	93,423,002 - 93,444,240 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	102,868,534 - 102,898,751 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	93,092,191 - 93,112,167 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	87,965,854 - 87,985,832 (+)	NCBI		Celera
RGSC_v3.1	6	93,095,646 - 93,115,622 (+)	NCBI
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

proteasome-associated autoinflammatory syndrome 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trimethylbenzene (EXP)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (EXP)

2,5-hexanedione (EXP)

2,6-dimethoxyphenol (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amitrole (EXP)

ammonium chloride (EXP)

ampicillin (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

beta-naphthoflavone (ISO)

bis(2-chloroethyl) sulfide (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (EXP,ISO)

bromobenzene (EXP)

bufalin (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

clofibrate (ISO)

cobalt dichloride (EXP)

cyclosporin A (ISO)

dibenzo[a,l]pyrene (ISO)

dibutyl phthalate (EXP)

dichlorine (EXP)

dicrotophos (ISO)

dimethylarsinous acid (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

eugenol (EXP)

finasteride (EXP)

fluoxetine (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

furfural (ISO)

genistein (EXP,ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

isotretinoin (ISO)

ivermectin (ISO)

lovastatin (ISO)

methidathion (ISO)

methimazole (EXP)

methoxychlor (EXP)

metronidazole (EXP)

mono(2-ethylhexyl) phthalate (ISO)

monobenzyl phthalate (ISO)

Monobutylphthalate (ISO)

monocrotaline (EXP)

monoethyl phthalate (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

nefazodone (EXP)

neomycin (EXP)

nickel atom (ISO)

nickel subsulfide (ISO)

nimesulide (EXP)

nitrates (ISO)

ozone (EXP,ISO)

p-menthan-3-ol (ISO)

paracetamol (EXP,ISO)

Pentoxifylline (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenethyl isothiocyanate (ISO)

phenobarbital (EXP)

picrotoxin (EXP)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

quinoline (ISO)

resveratrol (ISO)

rotenone (EXP,ISO)

sarin (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

titanium dioxide (ISO)

Tributyltin oxide (ISO)

tungsten (ISO)

valdecoxib (EXP)

vancomycin (EXP)

vorinostat (ISO)

warfarin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

proteasomal protein catabolic process (ISO,NAS)

proteasome-mediated ubiquitin-dependent protein catabolic process (IBA,ISO)

proteolysis involved in protein catabolic process (IEA)

regulation of proteasomal protein catabolic process (ISO)

response to oxidative stress (ISO)

ubiquitin-dependent protein catabolic process (IEA)

Cellular Component

cytoplasm (IEA,ISO)

cytosol (IEA)

nucleus (IBA,IEA,ISO)

proteasome complex (IEA,ISO)

proteasome core complex (IEA,ISO,ISS)

proteasome core complex, alpha-subunit complex (IBA,IEA,ISS)

synaptic vesicle (NAS)

Molecular Function

protein binding (ISO)

ubiquitin protein ligase binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ubiquitin/proteasome degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Activity-dependent dynamics and sequestration of proteasomes in dendritic spines.	Bingol B and Schuman EM, Nature. 2006 Jun 29;441(7097):1144-8.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	A genomic analysis of rat proteases and protease inhibitors.	Puente XS and Lopez-Otin C, Genome Res 2004 Apr;14(4):609-22.
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12.	An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses.	Sun C, etal., Science. 2023 May 26;380(6647):eadf2018. doi: 10.1126/science.adf2018. Epub 2023 May 26.
13.	cDNA cloning and sequencing of component C8 of proteasomes from rat hepatoma cells.	Tanaka K, etal., Biochem Biophys Res Commun 1990 Sep 14;171(2):676-83.
14.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:2249692	PMID:2335242	PMID:9688553	PMID:15489334	PMID:16207813	PMID:16641100	PMID:16857966	PMID:17323924	PMID:19056867	PMID:19208651	PMID:20458337	PMID:20498273
PMID:21630459	PMID:22793692	PMID:23376485	PMID:25002582	PMID:26524591	PMID:30361391	PMID:31904090

Genomics

Comparative Map Data

Psma3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	95,219,714 - 95,239,745 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	95,219,629 - 95,241,032 (+)	Ensembl				GRCr8
mRatBN7.2	6	89,483,741 - 89,503,775 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	89,483,727 - 89,504,965 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	89,868,034 - 89,888,332 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	90,167,503 - 90,187,803 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	89,606,993 - 89,627,292 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	93,423,029 - 93,444,223 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	93,423,002 - 93,444,240 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	102,868,534 - 102,898,751 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	93,092,191 - 93,112,167 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	87,965,854 - 87,985,832 (+)	NCBI		Celera
RGSC_v3.1	6	93,095,646 - 93,115,622 (+)	NCBI
Cytogenetic Map	6	q24	NCBI

PSMA3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	58,244,843 - 58,272,004 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	58,244,740 - 58,272,012 (+)	Ensembl			hg38	GRCh38
GRCh37	14	58,711,561 - 58,738,722 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	57,781,346 - 57,808,479 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	57,781,345 - 57,808,479	NCBI
Celera	14	38,761,540 - 38,788,685 (+)	NCBI		Celera
Cytogenetic Map	14	q23.1	NCBI
HuRef	14	38,877,058 - 38,904,216 (+)	NCBI		HuRef
CHM1_1	14	58,650,049 - 58,677,295 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	52,451,770 - 52,478,987 (+)	NCBI		T2T-CHM13v2.0

Psma3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	71,016,082 - 71,042,651 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	71,021,395 - 71,043,121 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	70,969,283 - 70,995,877 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	70,974,621 - 70,996,347 (+)	Ensembl			mm10	GRCm38
MGSCv37	12	72,075,610 - 72,095,924 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	71,893,298 - 71,913,526 (+)	NCBI		MGSCv36	mm8
Celera	12	72,078,082 - 72,098,500 (+)	NCBI		Celera
Cytogenetic Map	12	C2	NCBI
cM Map	12	29.39	NCBI

Psma3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	11,979,482 - 11,997,952 (+)	Ensembl
ChiLan1.0	NW_004955466	11,979,482 - 11,997,952 (+)	NCBI	ChiLan1.0	ChiLan1.0

PSMA3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	59,364,546 - 59,394,007 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	58,583,210 - 58,610,522 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	38,836,869 - 38,864,152 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	57,105,891 - 57,133,181 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	57,105,891 - 57,133,181 (+)	Ensembl			panPan2	panpan1.1

PSMA3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	33,616,735 - 33,642,434 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	33,616,480 - 33,642,404 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	33,378,219 - 33,403,729 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	33,858,343 - 33,884,028 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	33,858,385 - 33,884,037 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	33,471,278 - 33,496,743 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	33,538,435 - 33,564,256 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	33,913,572 - 33,939,074 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Psma3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	71,519,504 - 71,541,053 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	2,650,629 - 2,673,435 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	2,650,668 - 2,672,192 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PSMA3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	187,343,507 - 187,372,193 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	187,342,231 - 187,371,149 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	208,246,764 - 208,274,223 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PSMA3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	35,438,084 - 35,465,320 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	35,437,308 - 35,465,203 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	23,674,689 - 23,701,992 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Psma3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624884	3,324,418 - 3,346,128 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624884	3,324,390 - 3,346,128 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Psma3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	84,633,037 - 84,653,290 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Psma3
134 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	152
Count of miRNA genes:	102
Interacting mature miRNAs:	124
Transcripts:	ENSRNOT00000010753
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	64367996	109367996	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
4889933	Bss88	Bone structure and strength QTL 88	3.8		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	6	53684921	98684921	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
4889848	Pur25	Proteinuria QTL 25	14	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	63037319	95934232	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
5684963	Bss99	Bone structure and strength QTL 99	3.1		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	6	53684921	98684921	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
5684992	Bmd83	Bone mineral density QTL 82	4.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	6	53684921	98684921	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat

Markers in Region

RH127444

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	89,503,492 - 89,503,708 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	93,442,743 - 93,442,958	NCBI	Rnor6.0
Rnor_5.0	6	102,898,469 - 102,898,684	UniSTS	Rnor5.0
RGSC_v3.4	6	93,111,885 - 93,112,100	UniSTS	RGSC3.4
Celera	6	87,985,550 - 87,985,765	UniSTS
RH 3.4 Map	6	639.3	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH138090

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	6	95,221,416 - 95,221,563 (+)	Marker Load Pipeline
mRatBN7.2	6	89,485,444 - 89,485,591 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	93,424,697 - 93,424,843	NCBI	Rnor6.0
Rnor_5.0	6	102,870,438 - 102,870,584	UniSTS	Rnor5.0
RGSC_v3.4	6	93,093,859 - 93,094,005	UniSTS	RGSC3.4
Celera	6	87,967,522 - 87,967,668	UniSTS
RH 3.4 Map	6	640.3	UniSTS
Cytogenetic Map	10	q25	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH130667

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	89,504,584 - 89,504,785 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	93,443,835 - 93,444,035	NCBI	Rnor6.0
Rnor_5.0	6	102,899,561 - 102,899,761	UniSTS	Rnor5.0
RGSC_v3.4	6	93,112,977 - 93,113,177	UniSTS	RGSC3.4
Celera	6	87,986,642 - 87,986,842	UniSTS
RH 3.4 Map	6	639.5	UniSTS
Cytogenetic Map	6	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010753 ⟹ ENSRNOP00000010753

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	95,220,656 - 95,237,161 (+)	Ensembl
mRatBN7.2 Ensembl	6	89,484,684 - 89,501,189 (+)	Ensembl
Rnor_6.0 Ensembl	6	93,423,002 - 93,444,240 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000075868

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	93,437,383 - 93,441,873 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105733 ⟹ ENSRNOP00000084525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	95,219,687 - 95,241,032 (+)	Ensembl
mRatBN7.2 Ensembl	6	89,483,740 - 89,504,965 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114457 ⟹ ENSRNOP00000094706

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	95,219,629 - 95,238,843 (+)	Ensembl
mRatBN7.2 Ensembl	6	89,483,727 - 89,503,086 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119219 ⟹ ENSRNOP00000096724

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	89,484,684 - 89,501,189 (+)	Ensembl

RefSeq Acc Id:

NM_017280 ⟹ NP_058976

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	95,219,749 - 95,239,745 (+)	NCBI
mRatBN7.2	6	89,483,777 - 89,503,775 (+)	NCBI
Rnor_6.0	6	93,423,029 - 93,443,025 (+)	NCBI
Rnor_5.0	6	102,868,534 - 102,898,751 (+)	NCBI
RGSC_v3.4	6	93,092,191 - 93,112,167 (+)	RGD
Celera	6	87,965,854 - 87,985,832 (+)	RGD

Sequence:

show sequence

CCATGAGCTCCATTGGCACTGGGTATGACCTGTCAGCCTCTACATTCTCTCCTGATGGAAGAGT
TTTCCAAGTTGAATATGCTATGAAGGCTGTGGAAAACAGTAGTACAGCTATTGGGATCAGATGT
AAAGATGGTGTTGTGTTTGGGGTAGAAAAACTAGTCCTTTCTAAACTTTATGAAGAAGGCTCCA
ATAAACGTCTTTTCAATGTTGATCGACATGTTGGAATGGCAGTGGCAGGTTTGTTGGCAGATGC
TCGTTCCTTGGCAGACATAGCAAGAGAAGAAGCGTCCAACTTTAGGTCTAACTTTGGCTATAAC
ATTCCTCTAAAACATCTTGCAGACAGAGTGGCCATGTATGTACACGCGTATACACTCTACAGTG
CTGTTAGACCTTTTGGCTGCAGTTTCATGTTGGGGTCTTACAGTGTGAATGATGGTGCACAGCT
CTATATGATCGATCCATCAGGTGTTTCATATGGTTACTGGGGCTGTGCCATTGGCAAAGCCAGG
CAAGCTGCAAAGACAGAAATAGAAAAGCTTCAGATGAAGGAAATGACCTGCCGTGATGTAGTTA
AAGAAGTTGCAAAAATAATTTACATAGTACATGATGAAGTTAAGGATAAAGCTTTTGAACTAGA
GCTCAGCTGGGTTGGTGAATTAACTAAAGGAAGACATGAAATTGTTCCCAAAGACGTAAGAGAG
GAAGCAGAGAAATATGCCAAGGAATCTTTGAAGGAAGAAGATGAATCAGATGACGACAATATGT
AACATTTCACCATCCTCTGGTGTCCATTTCTGTGACAGTTGCATATGGCTAGCACCATGGATTA
TATATACCCACTGACCAATTTTCATTAAATTTTGTCTTATAAACATTGTTGGGTAATTGAGGAT
ATCTGCGTTATATTAAAATGTAGATTCATGTTTGATTAGAAATTCTAGGAACTGGGCCTGGAGA
GATGGCTCAGCAGTTAAGAGCTGCTCTTCCAGGGGACATAGGTTCAATTCCCAGCACCCGCATG
GCAGCTCACACCTGTTTGTAACTCTAGCTCCAGGTCTCTGACACCTAGACACAGAGGTACTTGC
AGGCAAAACACCAATGAATATAAAATAAAAATAAATGATATATATATTTACACATATAACAAGT
ATATACAAATATGTATATTATACAGACACATGTGTGTGTATATACATATAAATTCTTGGTGCTA
TTCTGGTGTGGTAGTATATGTCTTTAATCCTAGTACTCTGGAGGCAGAGGCAGGTGGATCTCTT
GAGTTCAAGGCTAGTATTTAAAAACAAAAACAAATGTAGTGCCCAGACTAAGGCTGAAAGATTG
AGCCCACAAGTCAATTTACAATTCCATTTTGTTTTAACTAGAATTAAAAGAATAATTTTAGATT
TTTTTTTTCTTTTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCT
CTACCACTAAGCTAAATCCCCAACCCCTTAGATTTATTTTTATTTTTTGCATGTTTATGTATAT
TACAGTGCCATGCCTGGTGCTCATGGAGGTCAAAAGAATGCTTTAATCTAGAACTAAAGTTATG
GAGGACTGTGAATCATGTATGTTCGAAACTGAACTTGGGTCCTGTGTAAGAGCAACACGTCCTC
TTAACCACTGAGCCATCTCTCCAGCCCTCTTTGACTAGAATGATCATATTCTACTGTGGTTCTT
GTATAATGTTTTGTTTAATGTAGGGATATCCTGTAACCACTATTGAGGACTAACCTGCCTTTTG
TGGAAAATGTGACATATTCTAATTTGACATCAATACAGACAACATTTATTTTCAGACTGCATAA
ATATCTTATGACTGGAAATTATCTTGATATTGGCACCTGAAACAAAAACTTAAAAGTTCCAAAC
TGGGCTTAAATATTTCATGTAATAAAATGTTTATAGTACTTATCTGAAAAAAAAAAAAAAAAAA
AAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017594059 ⟹ XP_017449548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	95,219,714 - 95,238,653 (+)	NCBI
mRatBN7.2	6	89,483,741 - 89,502,746 (+)	NCBI
Rnor_6.0	6	93,424,370 - 93,444,223 (+)	NCBI

Sequence:

show sequence

GTATGACCTGTCAGCCTCTACATTCTCTCCTGATGGAAGAGTTTTCCAAGTTGAATATGCTATG
AAGGCTGTGGAAAACAGTAGCTATTGGGATCAGATGTAAAGATGGTGTTGTGTTTGGGGTAGAA
AAACTAGTCCTTTCTAAACTTTATGAAGAAGGCTCCAATAAACGTCTTTTCAATGTTGATCGAC
ATGTTGGAATGGCAGTGGCAGGTTTGTTGGCAGATGCTCGTTCCTTGGCAGACATAGCAAGAGA
AGAAGCGTCCAACTTTAGGTCTAACTTTGGCTATAACATTCCTCTAAAACATCTTGCAGACAGA
GTGGCCATGTATGTACACGCGTATACACTCTACAGTGCTGTTAGACCTTTTGGCTGCAGTTTCA
TGTTGGGGTCTTACAGTGTGAATGATGGTGCACAGCTCTATATGATCGATCCATCAGGTGTTTC
ATATGGTTACTGGGGCTGTGCCATTGGCAAAGCCAGGCAAGCTGCAAAGACAGAAATAGAAAAG
CTTCAGATGAAGGAAATGACCTGCCGTGATGTAGTTAAAGAAGTTGCAAAAATAATTTACATAG
TACATGATGAAGTTAAGGATAAAGCTTTTGAACTAGAGCTCAGCTGGGTTGGTGAATTAACTAA
AGGAAGACATGAAATTGTTCCCAAAGACGTAAGAGAGGAAGCAGAGAAATATGCCAAGGAATCT
TTGAAGGAAGAAGATGAATCAGATGACGACAATATGTAACATTTCACCATCCTCTGGTGTCCAT
TTCTGTGACAGTTGCATATGGCTAGCACCATGGATTATATATACCCACTGACCAATTTTCATTA
AATTTTGTCTTATAAACATTGTTGGGTAATTGAGGATATCTGCGTTATATTAAAATGTAGATTC
ATGTTTGATTAGAAATTCTAGGAACTGGGCCTGGAGAGATGGCTCAGCAGTTAAGAGCTGCTCT
TCCAGGGGACATAGGTTCAATTCCCAGCACCCGCATGGCAGCTCACACCTGTTTGTAACTCTAG
CTCCAGGTCTCTGACACCTAGACACAGAGGTACTTGCAGGCAAAACACCAATGAATATAAAATA
AAAATAAATGATATATATATTTACACATATAACAAGTATATACAAATATGTATATTATACAGAC
ACATGTGTGTGTATATACATATAAATTCTTGGTGCTATTCTGGTGTGGTAGTATATGTCTTTAA
TCCTAGTACTCTGGAGGCAGAGGCAGGTGGATCTCTTGAGTTCAAGGCTAGTATTTAAAAACAA
AAACAAATGTAGTGCCCAGACTAAGGCTGAAAGATTGAGCCCACAAGTCAATTTACAATTCCAT
TTTGTTTTAACTAGAATTAAAAGAATAATTTTAGATTTTTTTTTTCTTTTTTTCAGAGCTGGGG
ACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTAAGCTAAATCCCCAACCCC
TTAGATTTATTTTTATTTTTTGCATGTTTATGTATATTACAGTGCCATGCCTGGTGCTCATGGA
GGTCAAAAGAATGCTTTAATCTAGAACTAAAGTTATGGAGGACTGTGAATCATGTATGTTCGAA
ACTGAACTTGGGTCCTGTGTAAGAGCAACACGTCCTCTTAACCACTGAGCCATCTCTCCAGCCC
TCTTTGACTAGAATGATCATATTCTACTGTGGTTCTTGTATAATGTTTTGTTTAATGTAGGGAT
ATCCTGTAACCACTATTGAGGACTAACCTGCCTTTTGTGGAAAATGTGACATATTCTAATTTGA
CATCAATACAGACAACATTTATTTTCAGACTGCATAAATATCTTATGACTGGAAATTATCTTGA
TATTGGCACCTGAAACAAAAACTTAAAAGTTCCAAACTGGGCTTAAATATTTCATGTAATAAAA
TGTTTATAGTACTTATCTGATAAGAAAGAGTTCTTTTGGTTTGTTTCTGTTACTTTTGGTTTAT
CTGAGGCAGAGTTAGTCTTCCTACATAAGCCCTGCCTGTCCTGGAACTTATTACATAGGCCAGG
CTGGCTTTGAACTCTCGAGATCCCCTTGCCTCTGCCTCCACCACACCTGGCCCTGTTTCTGTTG
TTAAAATGACCTAAAAAAAAGAAAATCAAATTTAGATTGTCAGTATCTCTGAAACAATTTCCTT
TGTAAGACAAGTGGCAAAATTAAAATTATGTATATTTTTTAAACATAAAGTAAACACATACTAC
AATGCAGATAAGATACCAGAAGAAACTCCAAATGAAAACGTCTTGAATGTGTAACTTTCTGTTT
TATTCGTCTGTTGAAATGTAATCTAGAGCTGACCTATATTTTACATTCTGGAACATCGCTGTAT
CCATATTGTATTCCTCGTACTTAGGCTGTTTCTAAGAGGAAGACAGTCCTATGTATTCCCCACA
AAGCCACCATAAGATCTCAAAACCACCAAAGTTCCTCCCCACTAAAGGCCCTTCAAGTGTTTAA
TATTTTTATCATAAATTATGTTTGTAACTAACCATGTGCAGTTCCACCACCCAGAACATGAGTT
GTTTTAAATCAGACAAGGCATGGTGCCACATACATTGTAATTCTAGTTCTCTAGAAGGTAAGAT
AGGAGAATTTAGAGGTCAACTTTGGATAAGGAGTGAGTGAGTTTCAGGCAAATCTGGAGAATCT
TACTTAACAAGAAGCTTCTTATAGGTATATCTGTGAGTTCTAGGACACCCTGGCCTATAAAGTT
AGTTCCAAGACAGGCAGGGCTACACAAAAGAAACTCTGTTTCAAAAAAACAAAAATACACGTCT
AATTCAACTTCAGTTGCCTAACAACTGTCAAAGCATGCAAGATTAAAGACAGAAAATAGAAACC
GATTCTTACCCTTTATAAAATACTCTGAAAACCCCATAGTGATGAAACTGCTAGTTGCTATCTT
GCTCCCTATAATCTGACTACTTTTCAAGAGTTACAGGGCAAAAGGCATTCATTCTCATAACCCA
AGATGTTTTACCGTCTATTTATATCCACTGTCTATTCAGCTTGAACTGTGTTACACAATAGGTA
ACTGTATTTATTGTGCTTTGTATATTTGAACATTAAAATGTTCTTTTTTGATCATTTACCCTTG
AA

hide sequence

RefSeq Acc Id:

XM_063261592 ⟹ XP_063117662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	95,220,008 - 95,238,653 (+)	NCBI

RefSeq Acc Id:

XM_063261593 ⟹ XP_063117663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	95,219,900 - 95,238,653 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_058976	(Get FASTA)	NCBI Sequence Viewer
	XP_017449548	(Get FASTA)	NCBI Sequence Viewer
	XP_063117662	(Get FASTA)	NCBI Sequence Viewer
	XP_063117663	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81817	(Get FASTA)	NCBI Sequence Viewer
	EDM03560	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010753
	ENSRNOP00000084525
	ENSRNOP00000084525.1
GenBank Protein	P18422	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_058976 ⟸ NM_017280

- UniProtKB:

P18422 (UniProtKB/Swiss-Prot), A6HC06 (UniProtKB/TrEMBL), Q6IE67 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN
KRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSA
VRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVK
EVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVPKDVREEAEKYAKESLKEEDESDDDNM

hide sequence

RefSeq Acc Id:	XP_017449548 ⟸ XM_017594059
- Peptide Label:	isoform X2
- Sequence:	show sequence MAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLG SYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHD EVKDKAFELELSWVGELTKGRHEIVPKDVREEAEKYAKESLKEEDESDDDNM hide sequence

Ensembl Acc Id:

ENSRNOP00000010753 ⟸ ENSRNOT00000010753

Ensembl Acc Id:

ENSRNOP00000084525 ⟸ ENSRNOT00000105733

Ensembl Acc Id:

ENSRNOP00000094706 ⟸ ENSRNOT00000114457

Ensembl Acc Id:

ENSRNOP00000096724 ⟸ ENSRNOT00000119219

RefSeq Acc Id:	XP_063117663 ⟸ XM_063261593
- Peptide Label:	isoform X3
- UniProtKB:	A6HH67 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117662 ⟸ XM_063261592
- Peptide Label:	isoform X1
- UniProtKB:	Q6IE67 (UniProtKB/TrEMBL)

Protein Domains

Proteasome alpha-type subunits

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P18422-F1-model_v2	AlphaFold	P18422	1-255	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694647

Promoter ID:

EPDNEW_R5170

Type:

initiation region

Name:

Psma3_1

Description:

proteasome subunit alpha 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	93,422,967 - 93,423,027	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:61844	AgrOrtholog
BioCyc Gene	G2FUF-37187	BioCyc
Ensembl Genes	ENSRNOG00000007851	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000010753	ENTREZGENE
	ENSRNOT00000105733	ENTREZGENE
	ENSRNOT00000105733.1	UniProtKB/Swiss-Prot
Gene3D-CATH	3.60.20.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7110009	IMAGE-MGC_LOAD
InterPro	Ntn_hydrolases_N	UniProtKB/Swiss-Prot
	Proteasome_alpha	UniProtKB/Swiss-Prot
	Proteasome_alpha-type	UniProtKB/Swiss-Prot
	Proteasome_asu_N	UniProtKB/Swiss-Prot
	Proteasome_sua/b	UniProtKB/Swiss-Prot
KEGG Report	rno:29670	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93511	IMAGE-MGC_LOAD
NCBI Gene	29670	ENTREZGENE
PANTHER	PROTEASOME SUBUNIT ALPHA/BETA	UniProtKB/Swiss-Prot
Pfam	Proteasome	UniProtKB/Swiss-Prot
	Proteasome_A_N	UniProtKB/Swiss-Prot
PhenoGen	Psma3	PhenoGen
PROSITE	PROTEASOME_ALPHA_1	UniProtKB/Swiss-Prot
	PROTEASOME_ALPHA_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000007851	RatGTEx
SMART	Proteasome_A_N	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF56235	UniProtKB/Swiss-Prot
TIGR	TC216589
UniProt	A0A8I6B1E1_RAT	UniProtKB/TrEMBL
	A0A8L2Q4S0_RAT	UniProtKB/TrEMBL
	A6HC06	ENTREZGENE, UniProtKB/TrEMBL
	A6HH67	ENTREZGENE, UniProtKB/TrEMBL
	P18422	ENTREZGENE, UniProtKB/Swiss-Prot
	Q6IE67	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-09-13	Psma3	proteasome 20S subunit alpha 3	Psma3	proteasome subunit alpha 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-08-19	Psma3	proteasome subunit alpha 3	Psma3	proteasome (prosome, macropain) subunit, alpha type 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Psma3	proteasome (prosome, macropain) subunit, alpha type 3			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)