Trnan1 (transfer RNA asparagine 1 (anticodon GUU)) - Rat Genome Database

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Gene: Trnan1 (transfer RNA asparagine 1 (anticodon GUU)) Rattus norvegicus
Analyze
Symbol: Trnan1
Name: transfer RNA asparagine 1 (anticodon GUU)
RGD ID: 3905
Description: tRNA gene cluster predicted to encode one or several tRNAs
Type: trna
Previously known as: Asp- Gly- Glu- and Leu-tRNAs cluster; Asp-, Gly-, Glu- and Leu-tRNAs cluster; RATTGDCL; RNTRNA; TGDCL; Tr@; Traggl; TRN; TRNA; tRNA asparagine; Trnegl
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.11386,926,613 - 87,050,072 (-)NCBI
Cytogenetic Map13 NCBI



References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
2. Characterization of a rat tRNA gene cluster: comparison of nucleotide sequences of the gene for tRNALeu newly found in repeating units. Shibuya K, etal., J Biochem (Tokyo) 1985 Jun;97(6):1719-25.

Genomics

Markers in Region
D13Mgh8  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01395,682,034 - 95,682,290NCBIRnor5.0
Rnor_5.01395,682,035 - 95,682,290NCBIRnor5.0
Rnor_5.01393,939,423 - 93,939,690NCBIRnor5.0
Rnor_5.01395,701,859 - 95,702,126NCBIRnor5.0
Rnor_5.01393,939,422 - 93,939,690NCBIRnor5.0
Rnor_5.01395,752,942 - 95,753,116NCBIRnor5.0
Rnor_5.01395,701,858 - 95,702,126NCBIRnor5.0
RGSC_v3.41386,915,524 - 86,915,779UniSTSRGSC3.4
RGSC_v3.41386,935,348 - 86,935,615RGDRGSC3.4
RGSC_v3.41386,915,525 - 86,915,779RGDRGSC3.4
RGSC_v3.41386,935,349 - 86,935,615UniSTSRGSC3.4
Celera1338,990,430 - 38,990,696UniSTS
RGSC_v3.11386,929,711 - 86,929,967RGD
RH 3.4 Map13552.7RGD
RH 3.4 Map13552.7UniSTS
RH 2.0 Map13611.7RGD
D13Arb12  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01394,075,909 - 94,076,216UniSTSRnor5.0
Rnor_5.01395,679,354 - 95,679,654UniSTSRnor5.0
Celera1383,127,023 - 83,127,326UniSTS
Cytogenetic Map13q24UniSTS
D13Wox7  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01389,439,295 - 89,439,448NCBIRnor6.0
Rnor_5.01395,679,360 - 95,679,525NCBIRnor5.0
Rnor_5.01395,679,359 - 95,679,525NCBIRnor5.0
RGSC_v3.41386,954,882 - 86,955,036RGDRGSC3.4
RGSC_v3.41386,954,883 - 86,955,036UniSTSRGSC3.4
RH 3.4 Map16660.4RGD
RH 3.4 Map16660.4UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide V01272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 24853 ENTREZGENE
PhenoGen Trnan1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-15 Trnan1  transfer RNA asparagine 1 (anticodon GUU)  TRN  tRNA asparagine  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 TRN  tRNA asparagine  Trnegl  Asp-, Gly-, Glu- and Leu-tRNAs cluster  Symbol and Name updated 1299863 APPROVED
2003-12-19 Trnegl  Asp-, Gly-, Glu- and Leu-tRNAs cluster  Tr@    Data merged from RGD:67363 632217 PROVISIONAL
2002-06-10 Tr@        Symbol and Name status set to approved 70586 APPROVED
2002-06-10 Trnegl  Asp-, Gly-, Glu- and Leu-tRNAs cluster      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_transcript contains neither the intervening sequences nor the CCA sequence expected in the 3'-end of the mature tRNA