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Gene: Syn3 (synapsin III) Rattus norvegicus

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Symbol:

Syn3

Name:

synapsin III

RGD ID:

3799

Description:

Enables ATP binding activity. Predicted to be involved in synapse organization and synaptic vesicle clustering. Located in synaptic vesicle. Is extrinsic component of synaptic vesicle membrane. Orthologous to human SYN3 (synapsin III); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC100910134; synapsin 3; synapsin-3; synapsin-3-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYN3 (synapsin III)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Syn3 (synapsin III)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Syn3 (synapsin III)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SYN3 (synapsin III)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYN3 (synapsin III)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Syn3 (synapsin III)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYN3 (synapsin III)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SYN3 (synapsin III)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Syn3 (synapsin III)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Syn3 (synapsin III)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SYN3 (synapsin III)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Syn3 (synapsin III)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Syn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Syn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	snn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	syn3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	19,244,032 - 19,701,571 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	19,264,094 - 19,696,510 (+)	Ensembl				GRCr8
mRatBN7.2	7	16,216,055 - 17,808,790 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	17,376,372 - 17,808,790 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	19,338,160 - 19,770,881 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	21,496,950 - 21,928,082 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	21,277,828 - 21,710,529 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	23,403,896 - 23,808,602 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	23,403,891 - 23,808,602 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	23,553,831 - 23,958,150 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	19,544,439 - 19,940,847 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	14,630,545 - 15,035,838 (+)	NCBI		Celera
RGSC_v3.1	7	19,552,680 - 19,953,765 (+)	NCBI
Cytogenetic Map	7	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

choline (ISO)

cocaine (ISO)

crocidolite asbestos (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

dopamine (ISO)

epoxiconazole (ISO)

folic acid (ISO)

L-methionine (ISO)

lead diacetate (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

paracetamol (EXP)

paraquat (EXP)

permethrin (EXP)

potassium dichromate (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

neurotransmitter secretion (IEA,TAS)

synapse organization (IBA)

synaptic vesicle clustering (IBA,IEA,ISO)

synaptic vesicle cycle (IEA,ISO)

Cellular Component

cytoplasmic vesicle (IEA)

extrinsic component of synaptic vesicle membrane (EXP,IDA,IEP)

glutamatergic synapse (IEA,ISO)

postsynaptic density (IEA,ISO)

synapse (IEA,ISO)

synaptic vesicle (IDA,IEA)

synaptic vesicle membrane (IBA,IEA,ISO)

Molecular Function

ATP binding (IDA,IEA)

nucleotide binding (IEA)

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular profiling of synaptic vesicle docking sites reveals novel proteins but few differences between glutamatergic and GABAergic synapses.	Boyken J, etal., Neuron. 2013 Apr 24;78(2):285-97. doi: 10.1016/j.neuron.2013.02.027.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Synapsin III, a novel synapsin with an unusual regulation by Ca2+.	Hosaka M and Sudhof TC, J Biol Chem 1998 May 29;273(22):13371-4.
5.	Neuronal nitric-oxide synthase localization mediated by a ternary complex with synapsin and CAPON.	Jaffrey SR, etal., Proc Natl Acad Sci U S A. 2002 Mar 5;99(5):3199-204. Epub 2002 Feb 26.
6.	A third member of the synapsin gene family.	Kao HT, etal., Proc Natl Acad Sci U S A. 1998 Apr 14;95(8):4667-72.
7.	A cytosolic splice variant of Cab45 interacts with Munc18b and impacts on amylase secretion by pancreatic acini.	Lam PP, etal., Mol Biol Cell. 2007 Jul;18(7):2473-80. Epub 2007 Apr 18.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	GOA pipeline	RGD automated data pipeline
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10358015	PMID:12040043	PMID:15071120	PMID:17114649	PMID:25843720

Genomics

Comparative Map Data

Syn3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	19,244,032 - 19,701,571 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	19,264,094 - 19,696,510 (+)	Ensembl				GRCr8
mRatBN7.2	7	16,216,055 - 17,808,790 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	17,376,372 - 17,808,790 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	19,338,160 - 19,770,881 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	21,496,950 - 21,928,082 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	21,277,828 - 21,710,529 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	23,403,896 - 23,808,602 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	23,403,891 - 23,808,602 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	23,553,831 - 23,958,150 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	19,544,439 - 19,940,847 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	14,630,545 - 15,035,838 (+)	NCBI		Celera
RGSC_v3.1	7	19,552,680 - 19,953,765 (+)	NCBI
Cytogenetic Map	7	q13	NCBI

SYN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	32,507,820 - 33,058,381 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	32,507,820 - 33,058,381 (-)	Ensembl			hg38	GRCh38
GRCh37	22	32,903,807 - 33,454,367 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	31,238,540 - 31,732,683 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	22	31,233,093 - 31,727,237	NCBI
Celera	22	16,710,711 - 17,256,522 (-)	NCBI		Celera
Cytogenetic Map	22	q12.3	NCBI
HuRef	22	15,865,721 - 16,411,951 (-)	NCBI		HuRef
CHM1_1	22	32,867,892 - 33,413,788 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	32,971,715 - 33,522,831 (-)	NCBI		T2T-CHM13v2.0

Syn3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	85,884,610 - 86,336,730 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	85,890,989 - 86,334,760 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	86,048,746 - 86,498,926 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	86,055,125 - 86,498,896 (-)	Ensembl			mm10	GRCm38
MGSCv37	10	85,511,491 - 85,961,641 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	85,485,308 - 85,928,638 (-)	NCBI		MGSCv36	mm8
Celera	10	88,022,524 - 88,480,347 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	41.95	NCBI

Syn3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	41,455,465 - 41,762,920 (-)	Ensembl
ChiLan1.0	NW_004955405	41,450,081 - 41,762,894 (-)	NCBI	ChiLan1.0	ChiLan1.0

SYN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	42,435,668 - 43,001,939 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	45,136,351 - 45,700,243 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	13,517,932 - 14,069,661 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	31,373,466 - 31,920,997 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	31,373,604 - 31,866,798 (-)	Ensembl			panPan2	panpan1.1

SYN3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	30,475,134 - 30,927,758 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	30,482,870 - 30,923,257 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	30,458,198 - 30,910,923 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	31,316,595 - 31,770,135 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	31,316,551 - 31,767,063 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	31,058,009 - 31,509,813 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	31,347,117 - 31,799,406 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	31,531,822 - 31,985,721 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Syn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	13,825,984 - 14,243,677 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	6,876,684 - 7,253,375 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	6,836,441 - 7,253,867 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYN3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	12,473,793 - 12,500,076 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	12,017,741 - 12,501,995 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	12,196,607 - 12,291,334 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYN3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	15,330,179 - 15,821,965 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	110,129,396 - 110,678,492 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Syn3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	1,699,107 - 1,972,252 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624750	1,663,309 - 1,976,738 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Syn3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	162,108,157 - 162,543,735 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Syn3
4429 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	322
Count of miRNA genes:	199
Interacting mature miRNAs:	233
Transcripts:	ENSRNOT00000037918
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	1	23748937	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	29716167	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	10498820	55498820	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat

Markers in Region

D7Mgh9

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	7	19,510,666 - 19,510,815 (+)	Marker Load Pipeline
Rnor_6.0	7	23,645,249 - 23,645,397	NCBI	Rnor6.0
Rnor_5.0	7	23,795,488 - 23,795,636	UniSTS	Rnor5.0
RGSC_v3.4	7	19,778,187 - 19,778,336	RGD	RGSC3.4
RGSC_v3.4	7	19,778,188 - 19,778,336	UniSTS	RGSC3.4
Celera	7	14,861,467 - 14,861,602	UniSTS
RGSC_v3.1	7	19,788,447 - 19,788,596	RGD
RH 2.0 Map	7	79.3	RGD
Cytogenetic Map	7	q13	UniSTS

D7Rat40

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	17,777,285 - 17,777,527 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,783,311 - 23,783,552	NCBI	Rnor6.0
Rnor_5.0	7	23,933,259 - 23,933,500	UniSTS	Rnor5.0
RGSC_v3.4	7	19,915,731 - 19,916,213	RGD	RGSC3.4
RGSC_v3.4	7	19,915,925 - 19,916,166	UniSTS	RGSC3.4
Celera	7	15,011,032 - 15,011,271	UniSTS
RGSC_v3.1	7	19,928,649 - 19,929,131	RGD
RH 2.0 Map	7	78.0	RGD
SHRSP x BN Map	7	6.87	RGD
Cytogenetic Map	7	q13	UniSTS

D7Rat216

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	7	19,566,070 - 19,566,284 (+)	Marker Load Pipeline
mRatBN7.2	7	17,678,338 - 17,678,552 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,700,654 - 23,700,867	NCBI	Rnor6.0
Rnor_5.0	7	23,850,893 - 23,851,106	UniSTS	Rnor5.0
RGSC_v3.4	7	19,833,592 - 19,833,806	RGD	RGSC3.4
RGSC_v3.4	7	19,833,593 - 19,833,806	UniSTS	RGSC3.4
Celera	7	14,916,655 - 14,916,868	UniSTS
RGSC_v3.1	7	19,847,222 - 19,847,649	RGD
SHRSP x BN Map	7	6.87	UniSTS
SHRSP x BN Map	7	6.87	RGD
Cytogenetic Map	7	q13	UniSTS

RH128273

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	17,523,310 - 17,523,527 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,545,609 - 23,545,825	NCBI	Rnor6.0
Rnor_5.0	7	23,695,848 - 23,696,064	UniSTS	Rnor5.0
RGSC_v3.4	7	19,678,548 - 19,678,764	UniSTS	RGSC3.4
Celera	7	14,762,644 - 14,762,860	UniSTS
Cytogenetic Map	7	q13	UniSTS

RH129267

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	17,523,345 - 17,523,536 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,545,644 - 23,545,834	NCBI	Rnor6.0
Rnor_5.0	7	23,695,883 - 23,696,073	UniSTS	Rnor5.0
RGSC_v3.4	7	19,678,583 - 19,678,773	UniSTS	RGSC3.4
Celera	7	14,762,679 - 14,762,869	UniSTS
Cytogenetic Map	7	q13	UniSTS

RH94615

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	17,524,335 - 17,524,409 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,546,634 - 23,546,707	NCBI	Rnor6.0
Rnor_5.0	7	23,696,873 - 23,696,946	UniSTS	Rnor5.0
RGSC_v3.4	7	19,679,573 - 19,679,646	UniSTS	RGSC3.4
Celera	7	14,763,669 - 14,763,742	UniSTS
Cytogenetic Map	7	q13	UniSTS

RH143027

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	17,679,415 - 17,679,605 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,701,731 - 23,701,920	NCBI	Rnor6.0
Rnor_5.0	7	23,851,970 - 23,852,159	UniSTS	Rnor5.0
RGSC_v3.4	7	19,834,670 - 19,834,859	UniSTS	RGSC3.4
Celera	7	14,917,732 - 14,917,921	UniSTS
Cytogenetic Map	7	q13	UniSTS

RH144261

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	17,551,976 - 17,552,083 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,574,271 - 23,574,377	NCBI	Rnor6.0
Rnor_5.0	7	23,724,510 - 23,724,616	UniSTS	Rnor5.0
RGSC_v3.4	7	19,707,210 - 19,707,316	UniSTS	RGSC3.4
Celera	7	14,791,244 - 14,791,350	UniSTS
Cytogenetic Map	7	q13	UniSTS

BI278238

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	17,523,117 - 17,523,220 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,545,416 - 23,545,518	NCBI	Rnor6.0
Rnor_5.0	7	23,695,655 - 23,695,757	UniSTS	Rnor5.0
RGSC_v3.4	7	19,678,355 - 19,678,457	UniSTS	RGSC3.4
Celera	7	14,762,451 - 14,762,553	UniSTS
Cytogenetic Map	7	q13	UniSTS

BF400160

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	17,802,723 - 17,802,823 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,808,746 - 23,808,845	NCBI	Rnor6.0
Rnor_5.0	7	23,958,294 - 23,958,393	UniSTS	Rnor5.0
RGSC_v3.4	7	19,940,991 - 19,941,090	UniSTS	RGSC3.4
Celera	7	15,035,982 - 15,036,081	UniSTS
Cytogenetic Map	7	q13	UniSTS

RH135110

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	17,522,418 - 17,522,611 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,544,717 - 23,544,909	NCBI	Rnor6.0
Rnor_5.0	7	23,694,956 - 23,695,148	UniSTS	Rnor5.0
RGSC_v3.4	7	19,677,656 - 19,677,848	UniSTS	RGSC3.4
Celera	7	14,761,752 - 14,761,944	UniSTS
Cytogenetic Map	7	q13	UniSTS

RH141014

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	7	19,408,827 - 19,409,022 (+)	Marker Load Pipeline
mRatBN7.2	7	17,521,115 - 17,521,310 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,543,414 - 23,543,608	NCBI	Rnor6.0
Rnor_5.0	7	23,693,653 - 23,693,847	UniSTS	Rnor5.0
RGSC_v3.4	7	19,676,353 - 19,676,547	UniSTS	RGSC3.4
Celera	7	14,760,452 - 14,760,643	UniSTS
Cytogenetic Map	7	q13	UniSTS

Timp3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	17,523,945 - 17,524,436 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,546,244 - 23,546,734	NCBI	Rnor6.0
Rnor_5.0	7	23,696,483 - 23,696,973	UniSTS	Rnor5.0
RGSC_v3.4	7	19,679,183 - 19,679,673	UniSTS	RGSC3.4
Celera	7	14,763,279 - 14,763,769	UniSTS
Cytogenetic Map	7	q13	UniSTS

G45201

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	17,562,016 - 17,562,389 (+)	MAPPER	mRatBN7.2
mRatBN7.2	7	17,562,046 - 17,562,389 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	23,584,341 - 23,584,683	NCBI	Rnor6.0
Rnor_6.0	7	23,584,311 - 23,584,683	NCBI	Rnor6.0
Rnor_5.0	7	23,734,580 - 23,734,922	UniSTS	Rnor5.0
Rnor_5.0	7	23,734,550 - 23,734,922	UniSTS	Rnor5.0
RGSC_v3.4	7	19,717,250 - 19,717,622	UniSTS	RGSC3.4
RGSC_v3.4	7	19,717,280 - 19,717,622	UniSTS	RGSC3.4
Celera	7	14,801,206 - 14,801,548	UniSTS
Celera	7	14,801,176 - 14,801,548	UniSTS
Cytogenetic Map	7	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
20	13	95	259	91	90	59	217	59	6	580	364	30	226	129	155	31	51	51

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC133425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC136584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC136645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF056704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000037918 ⟹ ENSRNOP00000036740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	19,264,094 - 19,696,510 (+)	Ensembl
mRatBN7.2 Ensembl	7	17,376,372 - 17,808,790 (+)	Ensembl
Rnor_6.0 Ensembl	7	23,403,891 - 23,808,602 (+)	Ensembl

RefSeq Acc Id:

NM_017109 ⟹ NP_058805

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	19,264,086 - 19,696,510 (+)	NCBI
mRatBN7.2	7	17,376,364 - 17,808,790 (+)	NCBI
Rnor_6.0	7	23,403,896 - 23,808,602 (+)	NCBI
Rnor_5.0	7	23,553,831 - 23,958,150 (+)	NCBI
RGSC_v3.4	7	19,544,439 - 19,940,847 (+)	RGD
Celera	7	14,630,545 - 15,035,838 (+)	RGD

Sequence:

show sequence

GCCAAATCGACTAGGTAAACAGAGTCCTGTGAAGCCCACTTCTGGTGGTGCAGAAGCCCCGGGA
TCCTCTGACCCCAAGCCTCCAGCTTCCTGTAGCTGGCAACCTGCACTTCAAACCTCATCTAGCT
GATTTTGTGTGGAAGGAGGCTTCCCATCCATCGCAGCCATGAACTTCCTCCGGAGGCGGCTGTC
AGACAGCAGCTTTGTGGCCAACCTGCCCAATGGCTACATGCCGGACCTGCAGCGCCCAGAGAGC
TCCAGTAGCTCCCCAGCATCCCCAGCCACAGAGAGAAGGCATCCCCAGCCCCTGGCTGCCTCCT
TCTCTTCTCCAGGATCCAGCCTGTTTAGCTCCTTCTCCAGTGCCATGAAACAGACCCCACAGGC
CCCGACAGGGCTAATGGAACCACCAACTCCTGTCACACCTGTGGTTCAAAGACCCAGGATCTTG
TTGGTCATTGATGATGCCCACACAGACTGGTCGAAATATTTTCATGGGAAGAAAGTGAATGGCG
ACATTGAGATCCGGGTGGAACAGGCTGAGTTCTCTGAGCTGAACCTGGCTGCTTATGTCACCGG
AGGCTGCATGGTGGACATGCAAGTTGTGAGAAATGGCACCAAAATTGTGCGGTCCTTCAAACCT
GACTTCATTCTGGTTAGACAGCATGCCTATAGCATGGCCCTGGCTGAGGACTACCGAAGCCTGG
TCATCGGCCTCCAGTATGGAGGGCTTCCTGCTGTCAACTCTCTCTACTCCGTATACAACTTCTG
CAGCAAGCCTTGGGTGTTCTCTCAGCTCATTAAGATCTTCCATTCCTTGGGTCCTGAGAAGTTT
CCACTAGTGGAGCAAACATTTTTCCCCAACCACAAGCCAATGCTCACAGCCCCGAACTTCCCTG
TGGTGATCAAGCTGGGACACGCTCATGCTGGCATGGGAAAGATCAAAGTAGAAAACCAGCACGA
CTACCAGGACATCACCAGCGTGGTGGCCATGGCCAAAACCTATGCCACCACGGAGGCCTTTATT
GACTCCAAGTATGACATCCGCATACAGAAGATCGGATCCAACTACAAGGCATACATGAGAACCT
CCATCTCTGGAAACTGGAAGGCCAACACAGGCTCTGCTATGCTGGAGCAGGTGGCCATGACGGA
AAGGTACAGGCTGTGGGTGGACAGCTGCTCAGAAATGTTCGGCGGCCTAGACATCTGTGCTGTC
AAGGCCGTTCACAGCAAGAATGGCAGAGATTATATCATTGAGGTCATGGACAGTTCAATGCCAC
TGATTGGAGAACATGTGGAGGAGGACAAGCAGTTAATGGCTGACCTTGTTGTTTCCAAGATGAG
CCAACTCCTGGTGCCAGGGGCCTCGGTGCCCTCCCCCCTGAGACCTTGGGGTCCACAGACTAAA
TCTGCAAAATCTCCAGGGCAAGGCCAGCTAGGACCTCTGCTCGGACAGCCCCAGCCAAGGCCAC
CTCCACAAGGGGGCCCTCGTCAGGCTCAGTCTCCTCAGCCTCCCAGATCTAGAAGTCCATCCCA
GCAGAGGCTCTCCCCACAAGGTCAGCAGCCTGTGAGTCCCCAGTCAGGATCCCCACAGCAGCAA
AGGTCACCAGGTTCTCCACAGCTATCCCGGGCATCTGGCGGCAGTTCTCCAAACCAGGCCTCCA
AGCCAACTGCCAGTCTCAGTTCACATACCCGGCCTCCTGTGCAGGGACGCAGCACCTCCCAGCA
GGGTGAAGAACCCCAAAAGACAGCATCACCTCACCCCCACCTCAACAAATCTCAGTCCCTGACT
AACAGCCTCAGCACGTCAGATACCTCCCATCGAGGAACCCCAAGTGAAGATGAGGCCAAGGCTG
AGACAATCCGCAACCTGAGGAAGTCCTTTGCCAGCCTCTTCTCCGACTAGCCTCTATCCAGGCT
GGAGGACAGGAGGGCAAGAAGACTCAGTGACTGGAGCCCTGTCTGGTTCCCTCCTTCTCAGCCT
TGGTTCCTGATGGAAATATGCTTCCTAAATACATCTGTCCCAGGAACTGGTGATCTACATTCCC
ACCTCCTTGACCATGACATTCTAATGCTGTCTGACTGAGCGGTAGCCTTGAGAGCCCCTAGGTT
CCTCAACACGGACCTTCTAGACAGACAAGGCATCACTACATCCACCATACGCTTGCTCCCTGCC
GCCGGTACCACGTGAGATGTCTGTGTGGCTTGTTTTTGCAGTCTTATTAGTATTTTGCTTGCCT
TTGGGCTGAGGCCCCCTTCTAAGCTGTGAC

hide sequence

RefSeq Acc Id:

XM_063263102 ⟹ XP_063119172

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	19,246,473 - 19,701,571 (+)	NCBI

RefSeq Acc Id:

XM_063263103 ⟹ XP_063119173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	19,244,032 - 19,701,571 (+)	NCBI

RefSeq Acc Id:

XM_063263104 ⟹ XP_063119174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	19,246,492 - 19,701,571 (+)	NCBI

RefSeq Acc Id:

XM_063263105 ⟹ XP_063119175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	19,246,484 - 19,701,571 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_058805	(Get FASTA)	NCBI Sequence Viewer
	XP_063119172	(Get FASTA)	NCBI Sequence Viewer
	XP_063119173	(Get FASTA)	NCBI Sequence Viewer
	XP_063119174	(Get FASTA)	NCBI Sequence Viewer
	XP_063119175	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC24521	(Get FASTA)	NCBI Sequence Viewer
	EDM17123	(Get FASTA)	NCBI Sequence Viewer
	EDM17124	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000036740
	ENSRNOP00000036740.6
GenBank Protein	O70441	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_058805 ⟸ NM_017109

- UniProtKB:

O70441 (UniProtKB/Swiss-Prot), A6IFC2 (UniProtKB/TrEMBL), A0A096MIT7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNFLRRRLSDSSFVANLPNGYMPDLQRPESSSSSPASPATERRHPQPLAASFSSPGSSLFSSFS
SAMKQTPQAPTGLMEPPTPVTPVVQRPRILLVIDDAHTDWSKYFHGKKVNGDIEIRVEQAEFSE
LNLAAYVTGGCMVDMQVVRNGTKIVRSFKPDFILVRQHAYSMALAEDYRSLVIGLQYGGLPAVN
SLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMLTAPNFPVVIKLGHAHAGMG
KIKVENQHDYQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSA
MLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKNGRDYIIEVMDSSMPLIGEHVEEDKQLM
ADLVVSKMSQLLVPGASVPSPLRPWGPQTKSAKSPGQGQLGPLLGQPQPRPPPQGGPRQAQSPQ
PPRSRSPSQQRLSPQGQQPVSPQSGSPQQQRSPGSPQLSRASGGSSPNQASKPTASLSSHTRPP
VQGRSTSQQGEEPQKTASPHPHLNKSQSLTNSLSTSDTSHRGTPSEDEAKAETIRNLRKSFASL
FSD

hide sequence

Ensembl Acc Id:

ENSRNOP00000036740 ⟸ ENSRNOT00000037918

RefSeq Acc Id:	XP_063119173 ⟸ XM_063263103
- Peptide Label:	isoform X1
- UniProtKB:	O70441 (UniProtKB/Swiss-Prot), A6IFC2 (UniProtKB/TrEMBL), A0A096MIT7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119172 ⟸ XM_063263102
- Peptide Label:	isoform X1
- UniProtKB:	O70441 (UniProtKB/Swiss-Prot), A6IFC2 (UniProtKB/TrEMBL), A0A096MIT7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119175 ⟸ XM_063263105
- Peptide Label:	isoform X1
- UniProtKB:	O70441 (UniProtKB/Swiss-Prot), A6IFC2 (UniProtKB/TrEMBL), A0A096MIT7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119174 ⟸ XM_063263104
- Peptide Label:	isoform X1
- UniProtKB:	O70441 (UniProtKB/Swiss-Prot), A6IFC2 (UniProtKB/TrEMBL), A0A096MIT7 (UniProtKB/TrEMBL)

Protein Domains

Synapsin ATP-binding Synapsin pre-ATP-grasp

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O70441-F1-model_v2	AlphaFold	O70441	1-579	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3799	AgrOrtholog
BioCyc Gene	G2FUF-34667	BioCyc
Ensembl Genes	ENSRNOG00000026866	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000037918	ENTREZGENE
	ENSRNOT00000037918.6	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.1490.20	UniProtKB/Swiss-Prot
	3.40.50.20	UniProtKB/Swiss-Prot
	ATP-grasp fold, B domain	UniProtKB/Swiss-Prot
InterPro	ATP_grasp_subdomain_1	UniProtKB/Swiss-Prot
	PreATP-grasp_dom_sf	UniProtKB/Swiss-Prot
	Synapsin	UniProtKB/Swiss-Prot
	Synapsin_ATP-bd_dom	UniProtKB/Swiss-Prot
	Synapsin_CS	UniProtKB/Swiss-Prot
	Synapsin_P_site	UniProtKB/Swiss-Prot
	Synapsin_pre-ATP-grasp_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:29130	UniProtKB/Swiss-Prot
NCBI Gene	29130	ENTREZGENE
PANTHER	SYNAPSIN	UniProtKB/Swiss-Prot
	SYNAPSIN-3	UniProtKB/Swiss-Prot
Pfam	Synapsin	UniProtKB/Swiss-Prot
	Synapsin_C	UniProtKB/Swiss-Prot
	Synapsin_N	UniProtKB/Swiss-Prot
PhenoGen	Syn3	PhenoGen
PRINTS	SYNAPSIN	UniProtKB/Swiss-Prot
PROSITE	SYNAPSIN_1	UniProtKB/Swiss-Prot
	SYNAPSIN_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000026866	RatGTEx
Superfamily-SCOP	Glutathione synthetase ATP-binding domain-like	UniProtKB/Swiss-Prot
	SSF52440	UniProtKB/Swiss-Prot
UniProt	A0A096MIT7	ENTREZGENE, UniProtKB/TrEMBL
	A6IFC2	ENTREZGENE, UniProtKB/TrEMBL
	O70441	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Syn3	synapsin III	LOC100910134	synapsin-3-like	Data merged from RGD:6500248	737654	PROVISIONAL
2012-07-05	LOC100910134	synapsin-3-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2004-09-10	Syn3	synapsin III		synapsin 3	Name updated	1299863	APPROVED
2002-06-10	Syn3	synapsin 3			Name updated	70585	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_function	binds ATP with high affinity and ADP with a lower affinity	70029
gene_regulation	ATP binding is inhibited by Ca2+	70029

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - MGI