Ndufa5 (NADH:ubiquinone oxidoreductase subunit A5) - Rat Genome Database

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Gene: Ndufa5 (NADH:ubiquinone oxidoreductase subunit A5) Rattus norvegicus
Analyze
Symbol: Ndufa5
Name: NADH:ubiquinone oxidoreductase subunit A5
RGD ID: 3155
Description: Predicted to be involved in respiratory electron transport chain. Part of protein-containing complex. Orthologous to human NDUFA5 (NADH:ubiquinone oxidoreductase subunit A5); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5-triiodo-L-thyronine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CI-13kD-B; complex I subunit B13; complex I-13kD-B; MGC72911; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5; NADH ubiquinone oxidoreductase subunit B13; NADH-ubiquinone oxidoreductase 13 kDa-B subunit; NADHUO
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8453,962,877 - 53,971,235 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl453,962,877 - 53,971,235 (-)EnsemblGRCr8
mRatBN7.2452,997,327 - 53,005,685 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl573,659,223 - 73,659,585 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl452,995,546 - 53,005,598 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx457,984,164 - 57,992,522 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0453,890,983 - 53,899,344 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0452,325,552 - 52,333,908 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0451,590,413 - 51,598,771 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl451,590,413 - 51,598,771 (-)Ensemblrn6Rnor6.0
Rnor_5.0451,368,669 - 51,377,027 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4450,649,500 - 50,657,858 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera448,163,115 - 48,171,473 (-)NCBICelera
RGSC_v3.1450,880,073 - 50,888,427 (-)NCBI
Cytogenetic Map4q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
Aflatoxin B2 alpha  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
aspartame  (ISO)
astaxanthin  (ISO)
benzene  (EXP)
benzo[a]pyrene  (ISO)
biochanin A  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorohydrocarbon  (EXP)
chlorpyrifos  (ISO)
clofibrate  (ISO)
clotrimazole  (EXP)
copper(II) sulfate  (ISO)
corosolic acid  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fenthion  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fructose  (EXP)
gentamycin  (EXP)
glyphosate  (ISO)
hydralazine  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
ketoconazole  (EXP)
lipopolysaccharide  (ISO)
Mesaconitine  (EXP)
methamphetamine  (EXP)
methapyrilene  (EXP)
methidathion  (ISO)
methimazole  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
monosodium L-glutamate  (ISO)
nefazodone  (EXP)
nicotine  (ISO)
nimesulide  (EXP)
nitroglycerin  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sulindac  (EXP)
tetrachloromethane  (EXP)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (EXP)
tributylstannane  (ISO)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The polypeptide composition of the mitochondrial NADH: ubiquinone reductase complex from several mammalian species. Cleeter MW and Ragan CI, Biochem J. 1985 Sep 15;230(3):739-46.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. A serial analysis of gene expression profile of the Alzheimer's disease Tg2576 mouse model. George AJ, etal., Neurotox Res. 2010 May;17(4):360-79. doi: 10.1007/s12640-009-9112-3. Epub 2009 Sep 16.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
6. Molecular cloning of the rat NADH:ubiquinone oxidoreductase subunit and its up-regulation in the facial muscle after denervation: detected by means of differential display. Kitahara T, etal., Neurol Res. 1996 Aug;18(4):329-36.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
14. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:12477932   PMID:12611891   PMID:14651853   PMID:15047621   PMID:15489334   PMID:18614015   PMID:21700703   PMID:24154540   PMID:27626371   PMID:34800366  


Genomics

Comparative Map Data
Ndufa5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8453,962,877 - 53,971,235 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl453,962,877 - 53,971,235 (-)EnsemblGRCr8
mRatBN7.2452,997,327 - 53,005,685 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl573,659,223 - 73,659,585 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl452,995,546 - 53,005,598 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx457,984,164 - 57,992,522 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0453,890,983 - 53,899,344 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0452,325,552 - 52,333,908 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0451,590,413 - 51,598,771 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl451,590,413 - 51,598,771 (-)Ensemblrn6Rnor6.0
Rnor_5.0451,368,669 - 51,377,027 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4450,649,500 - 50,657,858 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera448,163,115 - 48,171,473 (-)NCBICelera
RGSC_v3.1450,880,073 - 50,888,427 (-)NCBI
Cytogenetic Map4q22NCBI
NDUFA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387123,536,997 - 123,601,651 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7123,536,997 - 123,557,904 (-)Ensemblhg38GRCh38
GRCh377123,177,051 - 123,241,705 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367122,968,319 - 122,985,194 (-)NCBIBuild 36Build 36hg18NCBI36
Build 347122,775,033 - 122,791,909NCBI
Celera7117,984,821 - 118,001,712 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7117,543,876 - 117,560,767 (-)NCBIHuRef
CHM1_17123,114,373 - 123,131,247 (-)NCBICHM1_1
T2T-CHM13v2.07124,853,763 - 124,918,422 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27122,569,696 - 122,586,588 (-)NCBI
Ndufa5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39624,518,661 - 24,527,689 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl624,518,665 - 24,528,012 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38624,518,662 - 24,527,690 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl624,518,666 - 24,528,013 (-)Ensemblmm10GRCm38
MGSCv37624,468,666 - 24,477,687 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36624,468,676 - 24,477,697 (-)NCBIMGSCv36mm8
Celera624,530,384 - 24,539,405 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map611.28NCBI
Ndufa5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554795,064,652 - 5,080,215 (-)Ensembl
ChiLan1.0NW_0049554795,065,948 - 5,080,215 (-)NCBIChiLan1.0ChiLan1.0
NDUFA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26160,409,229 - 160,426,155 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1712,419,478 - 12,436,355 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07115,547,062 - 115,563,948 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17128,230,035 - 128,246,800 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7128,230,035 - 128,246,800 (-)EnsemblpanPan2panpan1.1
NDUFA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11411,995,862 - 12,008,257 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1411,680,175 - 11,692,562 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01411,773,697 - 11,786,109 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1411,773,694 - 11,787,826 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11411,963,395 - 11,975,792 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01411,701,242 - 11,713,645 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01411,941,763 - 11,954,191 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ndufa5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511850,275,192 - 50,288,699 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366051,915,031 - 1,928,732 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366051,915,246 - 1,928,853 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1823,881,966 - 23,900,855 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11823,881,872 - 23,896,699 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21825,478,874 - 25,492,248 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12192,330,693 - 92,348,567 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2192,327,822 - 92,348,591 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604211,117,409 - 11,135,413 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufa5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478312,418,963 - 12,439,440 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478312,418,825 - 12,435,868 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ndufa5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16114,804,061 - 114,814,033 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ndufa5
48 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:47
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000008325
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44140057786400577Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44442502489425024Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)44049044275726188Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
10450825Scl78Serum cholesterol level QTL 783.70.01blood VLDL cholesterol amount (VT:0005144)blood low density lipoprotein cholesterol level (CMO:0000053)45014392658080146Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
10450821Scl77Serum cholesterol level QTL 774.10.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)45014392658080146Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
10450818Scl76Serum cholesterol level QTL 763.60.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)45014392658080146Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)44047145375939996Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44140060386400603Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41891315163913151Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42786220462997402Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)44140057786400577Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000008325   ⟹   ENSRNOP00000008325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl451,590,413 - 51,598,771 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000020076   ⟹   ENSRNOP00000092529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl573,659,223 - 73,659,585 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096026   ⟹   ENSRNOP00000078262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl452,995,546 - 53,005,598 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100355   ⟹   ENSRNOP00000089514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl452,995,546 - 53,005,598 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000150412   ⟹   ENSRNOP00000109596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl453,962,877 - 53,971,235 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000170015   ⟹   ENSRNOP00000108821
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl453,962,877 - 53,971,235 (-)Ensembl
RefSeq Acc Id: NM_012985   ⟹   NP_037117
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8453,962,877 - 53,971,235 (-)NCBI
mRatBN7.2452,997,327 - 53,005,685 (-)NCBI
Rnor_6.0451,590,413 - 51,598,771 (-)NCBI
Rnor_5.0451,368,669 - 51,377,027 (-)NCBI
RGSC_v3.4450,649,500 - 50,657,858 (-)RGD
Celera448,163,115 - 48,171,473 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_037117 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH59148 (Get FASTA)   NCBI Sequence Viewer  
  BAA13045 (Get FASTA)   NCBI Sequence Viewer  
  EDM15169 (Get FASTA)   NCBI Sequence Viewer  
  EDM15170 (Get FASTA)   NCBI Sequence Viewer  
  EDM15171 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000078262.1
  ENSRNOP00000109596
GenBank Protein Q63362 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037117   ⟸   NM_012985
- UniProtKB: Q63362 (UniProtKB/Swiss-Prot),   A6IE84 (UniProtKB/TrEMBL),   A0A8I6AIC3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008325   ⟸   ENSRNOT00000008325
Ensembl Acc Id: ENSRNOP00000089514   ⟸   ENSRNOT00000100355
Ensembl Acc Id: ENSRNOP00000078262   ⟸   ENSRNOT00000096026
Ensembl Acc Id: ENSRNOP00000092529   ⟸   ENSRNOT00000020076
Ensembl Acc Id: ENSRNOP00000108821   ⟸   ENSRNOT00000170015
Ensembl Acc Id: ENSRNOP00000109596   ⟸   ENSRNOT00000150412

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63362-F1-model_v2 AlphaFold Q63362 1-116 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692904
Promoter ID:EPDNEW_R3429
Type:initiation region
Name:Ndufa5_1
Description:NADH:ubiquinone oxidoreductase subunit A5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0451,598,638 - 51,598,698EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3155 AgrOrtholog
BioCyc Gene G2FUF-45485 BioCyc
BioCyc Pathway PWY-3781 [aerobic respiration I (cytochrome c)] BioCyc
BioCyc Pathway Image PWY-3781 BioCyc
Ensembl Genes ENSRNOG00000005698 Ensembl
  ENSRNOG00000014899 Ensembl
  ENSRNOG00000071062 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000090026 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000096026.1 UniProtKB/Swiss-Prot
  ENSRNOT00000150412 ENTREZGENE
IMAGE_CLONE IMAGE:6919202 IMAGE-MGC_LOAD
InterPro NDUFA5 UniProtKB/Swiss-Prot
KEGG Report rno:25488 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72911 IMAGE-MGC_LOAD
NCBI Gene 25488 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 5 UniProtKB/Swiss-Prot
  PTHR12653 UniProtKB/Swiss-Prot
Pfam ETC_C1_NDUFA5 UniProtKB/Swiss-Prot
PhenoGen Ndufa5 PhenoGen
RatGTEx ENSRNOG00000005698 RatGTEx
  ENSRNOG00000014899 RatGTEx
  ENSRNOG00000071062 RatGTEx
  ENSRNOG00000090026 RatGTEx
TIGR TC216646
UniProt A0A8I6AIC3 ENTREZGENE
  A0ABK0M276_RAT UniProtKB/TrEMBL
  A6IE83_RAT UniProtKB/TrEMBL
  A6IE84 ENTREZGENE, UniProtKB/TrEMBL
  NDUA5_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Ndufa5  NADH:ubiquinone oxidoreductase subunit A5  Ndufa5  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Ndufa5  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5    NADH ubiquinone oxidoreductase subunit B13  Name updated 625702 APPROVED
2002-06-10 Ndufa5  NADH ubiquinone oxidoreductase subunit B13      Symbol and Name status set to approved 70586 APPROVED