Ggt5 (gamma-glutamyltransferase 5) - Rat Genome Database

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Gene: Ggt5 (gamma-glutamyltransferase 5) Rattus norvegicus
Analyze
Symbol: Ggt5 (Ensembl: AABR07044631.2)
Name: gamma-glutamyltransferase 5
RGD ID: 2684
Description: Predicted to enable glutathione hydrolase activity; leukotriene-C(4) hydrolase; and peptidyltransferase activity. Predicted to be involved in several processes, including carboxylic acid metabolic process; glutathione catabolic process; and proteolysis. Predicted to act upstream of or within lymphocyte migration. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human GGT5 (gamma-glutamyltransferase 5); PARTICIPATES IN arachidonic acid metabolic pathway; cyanoamino acid metabolic pathway; glutathione metabolic pathway; INTERACTS WITH 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: gamma-glutamyl leukotrienase; gamma-glutamyl transpeptidase-related enzyme; gamma-glutamyltransferase-like activity 1; gamma-glutamyltranspeptidase 5; GGL; GGT 5; GGT-rel; Ggta1; Ggtla1; glutathione hydrolase 5; glutathione hydrolase 5 proenzyme; leukotriene-C4 hydrolase; MGC93485
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,042,694 - 13,070,960 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2013,042,696 - 13,070,892 (-)EnsemblGRCr8
mRatBN7.22013,043,255 - 13,071,523 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,043,257 - 13,071,450 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2013,749,839 - 13,778,030 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02013,110,786 - 13,138,974 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02013,583,284 - 13,611,483 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02013,988,444 - 14,001,296 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02016,178,488 - 16,191,069 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01962,302,144 - 62,302,579 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera2014,531,284 - 14,557,667 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
Lung Neoplasms  (IEP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA,ISO,ISS)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Expression and regulation of gamma-glutamyl transpeptidase-related enzyme in tracheal cells. Potdar PD, etal., Am J Physiol 1997 Nov;273(5 Pt 1):L1082-9.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:1676842   PMID:9774450   PMID:12163373   PMID:12477932   PMID:21447318  


Genomics

Comparative Map Data
Ggt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,042,694 - 13,070,960 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2013,042,696 - 13,070,892 (-)EnsemblGRCr8
mRatBN7.22013,043,255 - 13,071,523 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,043,257 - 13,071,450 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2013,749,839 - 13,778,030 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02013,110,786 - 13,138,974 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02013,583,284 - 13,611,483 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02013,988,444 - 14,001,296 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02016,178,488 - 16,191,069 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01962,302,144 - 62,302,579 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera2014,531,284 - 14,557,667 (-)NCBICelera
Cytogenetic Map20p12NCBI
GGT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382224,219,654 - 24,245,142 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2224,218,000 - 24,245,748 (-)Ensemblhg38GRCh38
GRCh372224,615,622 - 24,641,110 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362222,945,622 - 22,971,110 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342222,940,192 - 22,965,582NCBI
Celera228,416,020 - 8,441,502 (-)NCBICelera
Cytogenetic Map22q11.23NCBI
HuRef227,564,739 - 7,590,237 (-)NCBIHuRef
CHM1_12224,574,371 - 24,599,750 (-)NCBICHM1_1
T2T-CHM13v2.02224,681,268 - 24,706,753 (-)NCBIT2T-CHM13v2.0
Ggt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391075,425,161 - 75,453,034 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1075,425,174 - 75,453,034 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381075,589,327 - 75,617,200 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1075,589,340 - 75,617,200 (+)Ensemblmm10GRCm38
MGSCv371075,052,126 - 75,079,713 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361075,033,097 - 75,060,684 (+)NCBIMGSCv36mm8
Celera1076,634,075 - 76,661,662 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.55NCBI
Ggt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,102,499 - 8,125,966 (+)Ensembl
ChiLan1.0NW_0049554558,101,251 - 8,125,597 (+)NCBIChiLan1.0ChiLan1.0
GGT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22334,004,643 - 34,033,738 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12236,738,366 - 36,767,475 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0225,025,740 - 5,053,074 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12223,110,461 - 23,125,629 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2223,110,780 - 23,125,632 (-)EnsemblpanPan2panpan1.1
GGT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12628,316,022 - 28,343,928 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2628,317,989 - 28,343,611 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2627,390,911 - 27,419,099 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02629,720,313 - 29,748,512 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2629,721,943 - 29,750,656 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12627,804,270 - 27,832,467 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02627,421,067 - 27,449,253 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02628,411,249 - 28,439,354 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ggt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118141,916,314 - 141,959,384 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936619794,889 - 837,736 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936619794,876 - 837,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GGT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1449,640,586 - 49,663,003 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11449,638,184 - 49,663,007 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,080,650 - 53,104,965 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ggt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474710,051,553 - 10,071,983 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474710,050,765 - 10,072,255 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ggt5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11811,829,780 - 11,855,917 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ggt5
284 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1581577Pur15Proteinuria QTL 154.380.0002urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804392015089182Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 48 67 133 95 11 43 31 32 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000093720   ⟹   ENSRNOP00000076334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2013,042,696 - 13,070,892 (-)Ensembl
mRatBN7.2 Ensembl2013,043,257 - 13,071,450 (-)Ensembl
RefSeq Acc Id: NM_019235   ⟹   NP_062108
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82013,042,694 - 13,070,892 (-)NCBI
mRatBN7.22013,043,255 - 13,071,450 (-)NCBI
Rnor_6.02013,988,444 - 14,001,296 (-)NCBI
Rnor_5.01962,302,144 - 62,302,579 (-)NCBI
Rnor_5.02016,178,488 - 16,191,069 (-)NCBI
Celera2014,531,284 - 14,557,667 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098626   ⟹   XP_038954554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82013,046,412 - 13,070,960 (-)NCBI
mRatBN7.22013,046,654 - 13,071,523 (-)NCBI
Protein Sequences
Protein RefSeqs NP_062108 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954554 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC23546 (Get FASTA)   NCBI Sequence Viewer  
  AAH87018 (Get FASTA)   NCBI Sequence Viewer  
  EDL97198 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000076334
  ENSRNOP00000076334.2
GenBank Protein Q9QWE9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_062108   ⟸   NM_019235
- UniProtKB: Q9QWE9 (UniProtKB/Swiss-Prot),   Q5PQV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038954554   ⟸   XM_039098626
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000076334   ⟸   ENSRNOT00000093720

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QWE9-F1-model_v2 AlphaFold Q9QWE9 1-572 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2684 AgrOrtholog
BioCyc Gene G2FUF-4152 BioCyc
Ensembl Genes ENSRNOG00000062276 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000093720 ENTREZGENE
  ENSRNOT00000093720.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.246.130 UniProtKB/Swiss-Prot
  3.60.20.40 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7191011 IMAGE-MGC_LOAD
InterPro GGT_CS UniProtKB/Swiss-Prot
  GGT_lsub_C UniProtKB/Swiss-Prot
  GGT_peptidase UniProtKB/Swiss-Prot
  GGT_ssub UniProtKB/Swiss-Prot
  Ntn_hydrolases_N UniProtKB/Swiss-Prot
KEGG Report rno:29566 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93485 IMAGE-MGC_LOAD
NCBI Gene 29566 ENTREZGENE
PANTHER GAMMA-GLUTAMYLTRANSFERASE 5 UniProtKB/Swiss-Prot
  PUTATIVE GLUTATHIONE HYDROLASE LIGHT CHAIN UniProtKB/Swiss-Prot
Pfam G_glu_transpept UniProtKB/Swiss-Prot
PhenoGen Ggt5 PhenoGen
PRINTS GGTRANSPTASE UniProtKB/Swiss-Prot
PROSITE G_GLU_TRANSPEPTIDASE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000062276 RatGTEx
Superfamily-SCOP SSF56235 UniProtKB/Swiss-Prot
UniProt A0A1W2Q6M5_RAT UniProtKB/TrEMBL
  GGT5_RAT UniProtKB/Swiss-Prot
  Q5PQV0 ENTREZGENE
  Q9QWE9 ENTREZGENE
UniProt Secondary Q5PQV0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-31 Ggt5  gamma-glutamyltransferase 5  Ggtla1  gamma-glutamyltransferase-like activity 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Ggtla1  gamma-glutamyltransferase-like activity 1      Name updated 70584 APPROVED
2002-02-27 Ggtla1  gamma-glutamyltransferase-like activity 1      Symbol updated 70292 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in rat tracheal epithelial cultured cells 69846
gene_function protein cleaves the gamma-glutamyl peptide bond of glutathione 69846
gene_transcript 2.6 Kb cDNA which is 79% identical to human 69846