Rps28-ps1 (ribosomal protein S28, pseudogene 1) - Rat Genome Database

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Gene: Rps28-ps1 (ribosomal protein S28, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Rps28-ps1
Name: ribosomal protein S28, pseudogene 1
RGD ID: 2302583
Description:
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: AABR07026317.1; null; ribosomal protein S28 pseudogene
Related Functional Gene: Rps28  
Latest Assembly: GRCr8 - GRCr8 Assembly
NCBI Annotation Information: Note: NCBI's annotation of RGSC v3.4 annotated this pseudogene on Rno16 as the functional gene. This was corrected November 26, 2008. [26 Nov 2008]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81673,511,032 - 73,511,356 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1673,511,032 - 73,511,341 (+)EnsemblGRCr8
mRatBN7.21666,808,357 - 66,808,682 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,797,875 - 66,808,775 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1672,085,564 - 72,085,888 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01675,491,512 - 75,491,836 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01670,740,007 - 70,740,331 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01671,592,963 - 71,593,287 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1671,592,986 - 71,593,195 (+)Ensemblrn6Rnor6.0
Rnor_5.01671,248,740 - 71,249,064 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41671,191,209 - 71,191,533 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1664,715,970 - 64,716,294 (+)NCBICelera
Cytogenetic Map16q12.4NCBI
JBrowse:




References
Additional References at PubMed
PMID:947902   PMID:1679328  


Genomics

Variants

.
Variants in Rps28-ps1
3 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)166241446475736480Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_009198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000025380   ⟹   ENSRNOP00000088092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,798,297 - 66,808,775 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114114   ⟹   ENSRNOP00000078298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,797,875 - 66,808,775 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-10956 BioCyc
Ensembl Genes ENSRNOG00000049442 Ensembl, ENTREZGENE
NCBI Gene 50718 ENTREZGENE
PhenoGen Rps28-ps1 PhenoGen
RatGTEx ENSRNOG00000049442 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-13 Rps28-ps1  ribosomal protein S28, pseudogene 1  AABR07026317.1    Data merged from RGD:15005748 737654 PROVISIONAL
2019-11-08 AABR07026317.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2009-01-02 Rps28-ps1  ribosomal protein S28, pseudogene 1      Symbol and Name status set to provisional 70820 PROVISIONAL