Scaf11 (SR-related CTD-associated factor 11) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Scaf11 (SR-related CTD-associated factor 11) Rattus norvegicus
Analyze
Symbol: Scaf11
Name: SR-related CTD-associated factor 11
RGD ID: 1598325
Description: Predicted to enable zinc ion binding activity. Predicted to be involved in spliceosomal complex assembly. Orthologous to human SCAF11 (SR-related CTD associated factor 11); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aristolochic acids; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC312030; serine/arginine-rich splicing factor 2, interacting protein; SFRS2-interacting protein; Sfrs2ip; similar to splicing factor, arginine/serine-rich 2, interacting protein; splicing factor, arginine/serine-rich 2, interacting protein; Srsf2ip
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Scaf11-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87129,450,872 - 129,503,280 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7129,417,955 - 129,503,280 (-)EnsemblGRCr8
mRatBN7.27127,571,678 - 127,624,089 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7127,574,463 - 127,624,101 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7129,372,444 - 129,424,839 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07131,597,961 - 131,650,354 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07131,518,839 - 131,571,169 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07137,804,019 - 137,856,337 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7137,804,019 - 137,856,485 (-)Ensemblrn6Rnor6.0
Rnor_5.07137,436,043 - 137,488,361 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47135,088,641 - 135,138,269 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7124,076,710 - 124,128,927 (-)NCBICelera
Cytogenetic Map7q35NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
aristolochic acids  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
clobetasol  (ISO)
clorgyline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dioxygen  (ISO)
diuron  (EXP)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nicotine  (ISO)
nitrates  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
phenobarbital  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
testosterone enanthate  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
zinc protoporphyrin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear body  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9447963   PMID:22658674   PMID:22681889   PMID:25931508   PMID:30361391  


Genomics

Comparative Map Data
Scaf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87129,450,872 - 129,503,280 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7129,417,955 - 129,503,280 (-)EnsemblGRCr8
mRatBN7.27127,571,678 - 127,624,089 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7127,574,463 - 127,624,101 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7129,372,444 - 129,424,839 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07131,597,961 - 131,650,354 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07131,518,839 - 131,571,169 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07137,804,019 - 137,856,337 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7137,804,019 - 137,856,485 (-)Ensemblrn6Rnor6.0
Rnor_5.07137,436,043 - 137,488,361 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47135,088,641 - 135,138,269 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7124,076,710 - 124,128,927 (-)NCBICelera
Cytogenetic Map7q35NCBI
SCAF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381245,919,131 - 45,992,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1245,919,131 - 45,992,120 (-)Ensemblhg38GRCh38
GRCh371246,312,914 - 46,384,357 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361244,599,181 - 44,670,668 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341244,601,458 - 44,610,015NCBI
Celera1245,110,253 - 45,181,745 (-)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1243,343,703 - 43,415,274 (-)NCBIHuRef
CHM1_11246,277,803 - 46,349,280 (-)NCBICHM1_1
T2T-CHM13v2.01245,878,717 - 45,954,628 (-)NCBIT2T-CHM13v2.0
Scaf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391596,309,580 - 96,358,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1596,309,580 - 96,358,724 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381596,411,698 - 96,460,988 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1596,411,699 - 96,460,843 (-)Ensemblmm10GRCm38
MGSCv371596,242,129 - 96,291,274 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361596,242,610 - 96,288,858 (-)NCBIMGSCv36mm8
Celera1598,562,854 - 98,597,741 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1552.44NCBI
Scaf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555005,186,954 - 5,229,887 (-)Ensembl
ChiLan1.0NW_0049555005,187,112 - 5,229,929 (-)NCBIChiLan1.0ChiLan1.0
SCAF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21048,171,764 - 48,248,633 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11248,165,957 - 48,245,391 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01242,732,783 - 42,810,650 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11243,603,961 - 43,678,883 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1243,633,640 - 43,675,988 (+)EnsemblpanPan2panpan1.1
SCAF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,343,501 - 8,396,735 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,324,170 - 8,395,285 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2737,915,498 - 37,989,388 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0278,518,372 - 8,592,412 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,518,096 - 8,717,938 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,326,196 - 8,400,075 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,365,392 - 8,439,240 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02738,154,509 - 38,228,437 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Scaf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494568,878,610 - 68,957,625 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365124,206,825 - 4,251,269 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365124,209,231 - 4,286,227 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCAF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl576,809,514 - 76,848,660 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1576,809,441 - 76,876,653 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2579,736,662 - 79,785,643 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCAF11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11142,132,550 - 42,209,387 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1142,129,779 - 42,209,402 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037204,227,981 - 204,311,573 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scaf11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248166,233,587 - 6,314,926 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Scaf11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11269,254,162 - 269,306,082 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Scaf11
408 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:32
Interacting mature miRNAs:34
Transcripts:ENSRNOT00000007003
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7116269196132020414Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
BE110221  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27127,625,403 - 127,625,558 (+)MAPPERmRatBN7.2
Rnor_6.07137,857,973 - 137,858,127NCBIRnor6.0
Rnor_5.07137,489,997 - 137,490,151UniSTSRnor5.0
RGSC_v3.47135,139,584 - 135,139,738UniSTSRGSC3.4
Celera7124,130,726 - 124,130,880UniSTS
RH 3.4 Map71095.3UniSTS
Cytogenetic Map7q35UniSTS
RH140182  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27127,573,739 - 127,573,957 (+)MAPPERmRatBN7.2
Rnor_6.07137,806,081 - 137,806,298NCBIRnor6.0
Rnor_5.07137,438,105 - 137,438,322UniSTSRnor5.0
RGSC_v3.47135,087,905 - 135,088,122UniSTSRGSC3.4
Celera7124,078,772 - 124,078,989UniSTS
RH 3.4 Map71094.3UniSTS
Cytogenetic Map7q35UniSTS
RH128657  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27127,574,595 - 127,574,792 (+)MAPPERmRatBN7.2
Rnor_6.07137,807,027 - 137,807,223NCBIRnor6.0
Rnor_5.07137,439,051 - 137,439,247UniSTSRnor5.0
RGSC_v3.47135,088,761 - 135,088,957UniSTSRGSC3.4
Celera7124,079,628 - 124,079,824UniSTS
RH 3.4 Map71094.0UniSTS
Cytogenetic Map7q35UniSTS
RH136978  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27127,571,743 - 127,571,951 (+)MAPPERmRatBN7.2
Rnor_6.07137,804,085 - 137,804,292NCBIRnor6.0
Rnor_5.07137,436,109 - 137,436,316UniSTSRnor5.0
RGSC_v3.47135,085,909 - 135,086,116UniSTSRGSC3.4
Celera7124,076,776 - 124,076,983UniSTS
RH 3.4 Map71127.6UniSTS
Cytogenetic Map7q35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000007003   ⟹   ENSRNOP00000007003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7129,417,955 - 129,503,280 (-)Ensembl
mRatBN7.2 Ensembl7127,574,480 - 127,624,101 (-)Ensembl
Rnor_6.0 Ensembl7137,804,019 - 137,856,485 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109436   ⟹   ENSRNOP00000092745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7129,450,872 - 129,503,280 (-)Ensembl
mRatBN7.2 Ensembl7127,574,463 - 127,624,101 (-)Ensembl
RefSeq Acc Id: NM_001271170   ⟹   NP_001258099
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87129,450,872 - 129,503,280 (-)NCBI
mRatBN7.27127,571,678 - 127,624,089 (-)NCBI
Rnor_6.07137,804,019 - 137,856,337 (-)NCBI
Rnor_5.07137,436,043 - 137,488,361 (-)NCBI
Celera7124,076,710 - 124,128,927 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063263397   ⟹   XP_063119467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87129,450,872 - 129,503,210 (-)NCBI
RefSeq Acc Id: XM_063263398   ⟹   XP_063119468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87129,450,872 - 129,503,210 (-)NCBI
RefSeq Acc Id: XM_063263399   ⟹   XP_063119469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87129,450,872 - 129,483,185 (-)NCBI
RefSeq Acc Id: NP_001258099   ⟸   NM_001271170
- UniProtKB: A6KC21 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007003   ⟸   ENSRNOT00000007003
Ensembl Acc Id: ENSRNOP00000092745   ⟸   ENSRNOT00000109436
RefSeq Acc Id: XP_063119468   ⟸   XM_063263398
- Peptide Label: isoform X2
- UniProtKB: A6KC21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119467   ⟸   XM_063263397
- Peptide Label: isoform X1
- UniProtKB: D4ABH1 (UniProtKB/TrEMBL),   A6KC21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119469   ⟸   XM_063263399
- Peptide Label: isoform X3
- UniProtKB: A6KC21 (UniProtKB/TrEMBL)
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABH1-F1-model_v2 AlphaFold D4ABH1 1-1439 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1598325 AgrOrtholog
BioCyc Gene G2FUF-32259 BioCyc
Ensembl Genes ENSRNOG00000005263 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007003 ENTREZGENE
  ENSRNOT00000007003.9 UniProtKB/TrEMBL
  ENSRNOT00000109436 ENTREZGENE
  ENSRNOT00000109436.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro SCAF11-like_C UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene 312030 ENTREZGENE
PANTHER PROTEIN SCAF11 UniProtKB/TrEMBL
  PROTEIN SCAF11 UniProtKB/TrEMBL
Pfam SCAF11-like_C UniProtKB/TrEMBL
PhenoGen Scaf11 PhenoGen
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005263 RatGTEx
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8I6GKB6_RAT UniProtKB/TrEMBL
  A6KC21 ENTREZGENE, UniProtKB/TrEMBL
  D4ABH1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Scaf11  SR-related CTD-associated factor 11  LOC681974  similar to splicing factor, arginine/serine-rich 2, interacting protein  Data merged from RGD:1589305 1643240 APPROVED
2011-08-01 Scaf11  SR-related CTD-associated factor 11  Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-22 Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  Scaf11  SR-related CTD-associated factor 11   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-13 Scaf11  SR-related CTD-associated factor 11   Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-09-20 Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  Srsf2ip  serine/arginine-rich splicing factor 2, interacting protein   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-09-14 Srsf2ip  serine/arginine-rich splicing factor 2, interacting protein   Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  LOC312030  similar to splicing factor, arginine/serine-rich 2, interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC312030  similar to splicing factor, arginine/serine-rich 2, interacting protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC681974  similar to splicing factor, arginine/serine-rich 2, interacting protein      Symbol and Name status set to provisional 70820 PROVISIONAL