Tnfrsf9 (TNF receptor superfamily member 9) - Rat Genome Database

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Gene: Tnfrsf9 (TNF receptor superfamily member 9) Rattus norvegicus
Analyze
Symbol: Tnfrsf9
Name: TNF receptor superfamily member 9
RGD ID: 1598208
Description: Predicted to enable signaling receptor activity. Predicted to be involved in regulation of cell population proliferation. Predicted to act upstream of or within regulation of immature T cell proliferation in thymus. Predicted to be located in plasma membrane. Human ortholog(s) of this gene implicated in immunodeficiency 109. Orthologous to human TNFRSF9 (TNF receptor superfamily member 9); PARTICIPATES IN cytokine mediated signaling pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4-1BB; LOC500590; MGC114552; similar to T-cell antigen 4-1BB precursor - mouse; tumor necrosis factor receptor superfamily member 9; tumor necrosis factor receptor superfamily, member 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85166,664,494 - 166,690,834 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5166,664,494 - 166,690,831 (+)EnsemblGRCr8
mRatBN7.25161,381,662 - 161,408,003 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5161,381,662 - 161,408,000 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5164,099,048 - 164,125,296 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05165,915,620 - 165,941,931 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05165,877,685 - 165,903,940 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05168,009,245 - 168,035,813 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5168,009,393 - 168,035,810 (+)Ensemblrn6Rnor6.0
Rnor_5.05171,586,822 - 171,613,568 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45168,071,159 - 168,099,501 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5159,635,368 - 159,660,862 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-diaminotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-tert-butylhydroquinone  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
8'-apo-beta,psi-caroten-8'-al  (ISO)
aflatoxin B1  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (EXP)
andrographolide  (ISO)
anthracen-2-amine  (EXP)
aripiprazole  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
Bardoxolone methyl  (ISO)
benzalkonium chloride  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-carotene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
calciol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP)
copper(0)  (EXP)
cordycepin  (ISO)
coumarin  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
deoxycholic acid  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epichlorohydrin  (ISO)
erythrosin B  (ISO)
ethanol  (ISO)
fentanyl  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fructose  (ISO)
fulvestrant  (ISO)
furosemide  (EXP)
Geniposide  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glucose  (ISO)
glycidol  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
GSK-J4  (ISO)
GW 4064  (ISO)
hexadecanoic acid  (ISO)
hydroquinone  (ISO)
ketoconazole  (EXP)
levofloxacin  (EXP)
Licarin A  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
metformin  (ISO)
methotrexate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
Muraglitazar  (EXP)
N-Nitrosopyrrolidine  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
p-menthan-3-ol  (ISO)
paclitaxel  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
PCB138  (ISO)
pemetrexed  (ISO)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
potassium chromate  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rose bengal  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sarin  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
streptozocin  (ISO)
styrene oxide  (ISO)
sulforaphane  (ISO)
Sunset Yellow FCF  (ISO)
tartrazine  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (EXP)
tetrachloromethane  (EXP)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
tributylstannane  (EXP)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (EXP)
trovafloxacin  (ISO)
tunicamycin  (ISO)
uranium atom  (ISO)
usnic acid  (ISO)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8405064   PMID:12477932   PMID:18640726   PMID:19008373   PMID:19233196   PMID:21352817   PMID:23453329   PMID:23484089  


Genomics

Comparative Map Data
Tnfrsf9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85166,664,494 - 166,690,834 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5166,664,494 - 166,690,831 (+)EnsemblGRCr8
mRatBN7.25161,381,662 - 161,408,003 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5161,381,662 - 161,408,000 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5164,099,048 - 164,125,296 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05165,915,620 - 165,941,931 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05165,877,685 - 165,903,940 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05168,009,245 - 168,035,813 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5168,009,393 - 168,035,810 (+)Ensemblrn6Rnor6.0
Rnor_5.05171,586,822 - 171,613,568 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45168,071,159 - 168,099,501 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5159,635,368 - 159,660,862 (+)NCBICelera
Cytogenetic Map5q36NCBI
TNFRSF9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3817,915,871 - 7,940,839 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl17,915,871 - 7,943,165 (-)Ensemblhg38GRCh38
GRCh3717,975,931 - 8,000,899 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3617,902,494 - 7,923,474 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3417,914,172 - 7,935,153NCBI
Celera17,086,974 - 7,107,941 (-)NCBICelera
Cytogenetic Map1p36.23NCBI
HuRef17,124,023 - 7,151,098 (-)NCBIHuRef
CHM1_117,963,693 - 7,990,983 (-)NCBICHM1_1
T2T-CHM13v2.017,446,742 - 7,471,701 (-)NCBIT2T-CHM13v2.0
Tnfrsf9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394151,004,612 - 151,030,561 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4150,999,019 - 151,030,559 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384150,920,155 - 150,946,104 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4150,914,562 - 150,946,102 (+)Ensemblmm10GRCm38
MGSCv374150,294,264 - 150,320,211 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364149,769,106 - 149,789,004 (+)NCBIMGSCv36mm8
Celera4153,197,328 - 153,223,255 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map481.52NCBI
Tnfrsf9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554864,989,582 - 5,010,213 (+)Ensembl
ChiLan1.0NW_0049554864,986,245 - 5,009,437 (+)NCBIChiLan1.0ChiLan1.0
TNFRSF9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,286,976 - 220,307,625 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11218,928,238 - 218,948,891 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016,681,954 - 6,703,813 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.117,942,678 - 7,949,326 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl17,942,641 - 7,949,326 (-)EnsemblpanPan2panpan1.1
TNFRSF9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1561,548,972 - 61,562,019 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl561,551,405 - 61,560,667 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha561,557,753 - 61,570,789 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0561,765,323 - 61,778,355 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl561,767,778 - 61,777,041 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1561,764,591 - 61,777,621 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0561,629,405 - 61,642,432 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0562,032,740 - 62,045,771 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tnfrsf9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505831,913,208 - 31,934,402 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366232,399,752 - 2,407,009 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366232,398,446 - 2,407,990 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl668,590,360 - 68,609,695 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1668,590,562 - 68,609,784 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2663,053,826 - 63,072,324 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120123,808,289 - 123,839,957 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20123,820,342 - 123,838,987 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605427,842,800 - 27,874,576 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248183,925,626 - 3,934,046 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248183,924,883 - 3,934,343 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tnfrsf9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v119,815,568 - 9,831,192 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tnfrsf9
160 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:80
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000055506
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5156396728167181764Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5160111176171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5156289283171137955Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5160071170172129029Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 61 151 91 90 59 85 59 6 343 179 11 129 81 92 31 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000055506   ⟹   ENSRNOP00000052371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5166,664,494 - 166,690,831 (+)Ensembl
mRatBN7.2 Ensembl5161,381,662 - 161,408,000 (+)Ensembl
Rnor_6.0 Ensembl5168,009,393 - 168,035,810 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077202   ⟹   ENSRNOP00000074761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5161,391,563 - 161,407,951 (+)Ensembl
Rnor_6.0 Ensembl5168,019,058 - 168,035,792 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118543   ⟹   ENSRNOP00000083115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5166,664,494 - 166,690,655 (+)Ensembl
mRatBN7.2 Ensembl5161,381,662 - 161,407,824 (+)Ensembl
RefSeq Acc Id: NM_001025773   ⟹   NP_001020944
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,664,494 - 166,690,834 (+)NCBI
mRatBN7.25161,381,662 - 161,408,003 (+)NCBI
Rnor_6.05168,009,393 - 168,035,813 (+)NCBI
Rnor_5.05171,586,822 - 171,613,568 (+)NCBI
RGSC_v3.45168,071,159 - 168,099,501 (+)RGD
Celera5159,635,368 - 159,660,862 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239472   ⟹   XP_006239534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,674,047 - 166,690,834 (+)NCBI
mRatBN7.25161,391,209 - 161,408,003 (+)NCBI
Rnor_6.05168,017,537 - 168,035,813 (+)NCBI
Rnor_5.05171,586,822 - 171,613,568 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764282   ⟹   XP_008762504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,665,001 - 166,690,834 (+)NCBI
mRatBN7.25161,382,147 - 161,408,003 (+)NCBI
Rnor_6.05168,009,804 - 168,035,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110647   ⟹   XP_038966575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,674,043 - 166,690,834 (+)NCBI
mRatBN7.25161,391,206 - 161,408,003 (+)NCBI
RefSeq Acc Id: XM_039110648   ⟹   XP_038966576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,672,549 - 166,690,834 (+)NCBI
mRatBN7.25161,390,387 - 161,408,003 (+)NCBI
RefSeq Acc Id: XM_039110649   ⟹   XP_038966577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85166,672,563 - 166,690,689 (+)NCBI
mRatBN7.25161,390,405 - 161,407,865 (+)NCBI
RefSeq Acc Id: NP_001020944   ⟸   NM_001025773
- Peptide Label: precursor
- UniProtKB: Q4V895 (UniProtKB/TrEMBL),   D4AD93 (UniProtKB/TrEMBL),   A0A9K3Y716 (UniProtKB/TrEMBL),   Q4W8J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239534   ⟸   XM_006239472
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008762504   ⟸   XM_008764282
- Peptide Label: isoform X1
- UniProtKB: Q4V895 (UniProtKB/TrEMBL),   D4AD93 (UniProtKB/TrEMBL),   A0A9K3Y716 (UniProtKB/TrEMBL),   Q4W8J3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074761   ⟸   ENSRNOT00000077202
Ensembl Acc Id: ENSRNOP00000052371   ⟸   ENSRNOT00000055506
RefSeq Acc Id: XP_038966576   ⟸   XM_039110648
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038966577   ⟸   XM_039110649
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038966575   ⟸   XM_039110647
- Peptide Label: isoform X1
- UniProtKB: D4AD93 (UniProtKB/TrEMBL),   Q4V895 (UniProtKB/TrEMBL),   A0A9K3Y716 (UniProtKB/TrEMBL),   Q4W8J3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083115   ⟸   ENSRNOT00000118543
Protein Domains
TNFR-Cys

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V895-F1-model_v2 AlphaFold Q4V895 1-258 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694286
Promoter ID:EPDNEW_R4811
Type:multiple initiation site
Name:Tnfrsf9_1
Description:TNF receptor superfamily member 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05168,019,324 - 168,019,384EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1598208 AgrOrtholog
BioCyc Gene G2FUF-39051 BioCyc
Ensembl Genes ENSRNOG00000036942 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055506 ENTREZGENE
  ENSRNOT00000055506.6 UniProtKB/TrEMBL
  ENSRNOT00000118543.2 UniProtKB/TrEMBL
Gene3D-CATH Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7459228 IMAGE-MGC_LOAD
InterPro TNFR_9 UniProtKB/TrEMBL
  TNFR_Cys_rich_reg UniProtKB/TrEMBL
  TNFRSF9_N UniProtKB/TrEMBL
KEGG Report rno:500590 UniProtKB/TrEMBL
MGC_CLONE MGC:114552 IMAGE-MGC_LOAD
NCBI Gene 500590 ENTREZGENE
PANTHER PTHR47139:SF1 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 9 UniProtKB/TrEMBL
Pfam TNFR_c6 UniProtKB/TrEMBL
PhenoGen Tnfrsf9 PhenoGen
PRINTS TNFACTORR9 UniProtKB/TrEMBL
PROSITE TNFR_NGFR_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000036942 RatGTEx
SMART TNFR UniProtKB/TrEMBL
Superfamily-SCOP TNF receptor-like UniProtKB/TrEMBL
UniProt A0A8I5ZWJ3_RAT UniProtKB/TrEMBL
  A0A9K3Y716 ENTREZGENE, UniProtKB/TrEMBL
  D4AD93 ENTREZGENE
  Q4V895 ENTREZGENE, UniProtKB/TrEMBL
  Q4W8J3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D4AD93 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-05 Tnfrsf9  TNF receptor superfamily member 9  Tnfrsf9  tumor necrosis factor receptor superfamily, member 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Tnfrsf9  tumor necrosis factor receptor superfamily, member 9  LOC500590  similar to T-cell antigen 4-1BB precursor - mouse  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC500590  similar to T-cell antigen 4-1BB precursor - mouse      Symbol and Name status set to provisional 70820 PROVISIONAL