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Gene: Cnpy3 (canopy FGF signaling regulator 3) Rattus norvegicus

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Symbol:

Cnpy3

Name:

canopy FGF signaling regulator 3

RGD ID:

1597709

Description:

Predicted to enable signaling receptor binding activity. Predicted to be involved in innate immune response. Predicted to be located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 60. Orthologous to human CNPY3 (canopy FGF signaling regulator 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

canopy 3 homolog; canopy 3 homolog (zebrafish); LOC685174; protein canopy homolog 3; similar to trinucleotide repeat containing 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CNPY3 (canopy FGF signaling regulator 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cnpy3 (canopy FGF signaling regulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cnpy3 (canopy FGF signaling regulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CNPY3 (canopy FGF signaling regulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CNPY3 (canopy FGF signaling regulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cnpy3 (canopy FGF signaling regulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CNPY3 (canopy FGF signaling regulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CNPY3 (canopy FGF signaling regulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cnpy3 (canopy FGF signaling regulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cnpy3 (canopy FGF signaling regulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PRPF31 (pre-mRNA processing factor 31)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CNPY3 (canopy FGF signaling regulator 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cnpy3 (canopy FGF signaling regulator 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cnpy3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C11H1.7	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C11H1.7	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CNPYb	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CNPYb	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	cnpy3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	21,731,088 - 21,745,448 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	21,730,791 - 21,745,505 (+)	Ensembl				GRCr8
mRatBN7.2	9	14,233,478 - 14,247,847 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,233,428 - 14,247,831 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	22,815,662 - 22,830,584 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	27,878,947 - 27,894,777 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,179,035 - 26,193,957 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	16,543,715 - 16,558,441 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	16,543,688 - 16,558,456 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	15,450,330 - 15,465,056 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	10,105,689 - 10,120,259 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	11,981,824 - 11,996,290 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 60 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP,ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

fenpyroximate (ISO)

folic acid (ISO)

fulvestrant (ISO)

glafenine (EXP)

indometacin (ISO)

ivermectin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methidathion (ISO)

methyl methanesulfonate (ISO)

nitrates (ISO)

paracetamol (ISO)

phenylmercury acetate (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

testosterone (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

immune system process (IEA)

innate immune response (IEA)

Cellular Component

endoplasmic reticulum (IEA)

Molecular Function

protein binding (ISO)

signaling receptor binding (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16338228

Genomics

Comparative Map Data

Cnpy3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	21,731,088 - 21,745,448 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	21,730,791 - 21,745,505 (+)	Ensembl				GRCr8
mRatBN7.2	9	14,233,478 - 14,247,847 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,233,428 - 14,247,831 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	22,815,662 - 22,830,584 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	27,878,947 - 27,894,777 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,179,035 - 26,193,957 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	16,543,715 - 16,558,441 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	16,543,688 - 16,558,456 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	15,450,330 - 15,465,056 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	10,105,689 - 10,120,259 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	11,981,824 - 11,996,290 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

CNPY3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	42,928,002 - 42,939,294 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	42,929,115 - 42,939,903 (+)	Ensembl			hg38	GRCh38
GRCh37	6	42,895,740 - 42,907,032 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	43,004,838 - 43,014,986 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	6	44,449,122 - 44,459,272 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	42,614,299 - 42,624,447 (+)	NCBI		HuRef
CHM1_1	6	42,899,329 - 42,909,477 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	42,757,067 - 42,768,434 (+)	NCBI		T2T-CHM13v2.0

Cnpy3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	47,046,637 - 47,063,639 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	47,046,631 - 47,063,140 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	46,735,711 - 46,752,713 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	46,735,705 - 46,752,214 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	46,872,662 - 46,889,161 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	46,198,899 - 46,215,391 (-)	NCBI		MGSCv36	mm8
Celera	17	50,171,313 - 50,187,813 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	22.9	NCBI

Cnpy3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	8,930,885 - 8,939,869 (+)	Ensembl
ChiLan1.0	NW_004955437	8,930,883 - 8,939,869 (+)	NCBI	ChiLan1.0	ChiLan1.0

CNPY3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	57,426,033 - 57,436,101 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	53,296,466 - 53,306,134 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	42,518,140 - 42,528,239 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	43,812,595 - 43,822,918 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	43,812,791 - 43,824,252 (+)	Ensembl			panPan2	panpan1.1

CNPY3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	11,477,659 - 11,487,228 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	11,477,733 - 11,487,196 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	11,504,664 - 11,514,250 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	11,958,839 - 11,968,425 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	11,958,856 - 11,968,413 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	11,486,770 - 11,496,362 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	11,571,198 - 11,580,800 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	11,665,086 - 11,674,674 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cnpy3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	46,977,077 - 46,987,820 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	16,971,942 - 16,983,184 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	16,972,389 - 16,983,266 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNPY3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	38,014,751 - 38,026,456 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	38,014,766 - 38,025,752 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	43,463,159 - 43,473,533 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNPY3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	29,215,239 - 29,225,511 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	29,211,767 - 29,225,142 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	42,986,787 - 42,998,493 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cnpy3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	16,529,446 - 16,540,098 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	16,529,439 - 16,540,094 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cnpy3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	83,116,638 - 83,132,099 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cnpy3
142 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	91
Count of miRNA genes:	71
Interacting mature miRNAs:	84
Transcripts:	ENSRNOT00000021868
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	1	31250552	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	496645	45496645	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	41763315	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	6714888	29567695	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	496645	45496645	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	496645	45496645	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat

Markers in Region

RH133362

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	9	21,745,163 - 21,745,356 (+)	Marker Load Pipeline
mRatBN7.2	9	14,247,553 - 14,247,747 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,558,157 - 16,558,349	NCBI	Rnor6.0
Rnor_5.0	9	15,464,772 - 15,464,964	UniSTS	Rnor5.0
RGSC_v3.4	9	10,119,974 - 10,120,166	UniSTS	RGSC3.4
Celera	9	11,996,006 - 11,996,198	UniSTS
Cytogenetic Map	9	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021868 ⟹ ENSRNOP00000021868

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	21,730,791 - 21,745,505 (+)	Ensembl
mRatBN7.2 Ensembl	9	14,233,428 - 14,247,831 (+)	Ensembl
Rnor_6.0 Ensembl	9	16,543,688 - 16,558,456 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100864 ⟹ ENSRNOP00000084251

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	21,731,018 - 21,735,392 (+)	Ensembl
mRatBN7.2 Ensembl	9	14,233,428 - 14,237,782 (+)	Ensembl

RefSeq Acc Id:

NM_001134710 ⟹ NP_001128182

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,731,088 - 21,745,448 (+)	NCBI
mRatBN7.2	9	14,233,478 - 14,247,839 (+)	NCBI
Rnor_6.0	9	16,543,715 - 16,558,441 (+)	NCBI
Rnor_5.0	9	15,450,330 - 15,465,056 (+)	NCBI
RGSC_v3.4	9	10,105,689 - 10,120,259 (+)	RGD
Celera	9	11,981,824 - 11,996,290 (+)	RGD

Sequence:

show sequence

CCGCTCCGGGTCCGACTGGGCCATGGAGTCCATGTCTGAGCTCGCGCCCCGCTGCCTCCTGCTT
CTCTTGCTGCTGCTGCCGCTGCTGCTCCTCCCTGCCCCGAAGCTGGGCCCGAGCTCCGCCGGGG
CCGAGGAGACCGACTGGGTGCGATTGCCCAGCAAATGCGAAGTGTGCAAGTATGTTGCCGTGGA
GCTGAAGTCAGCTTTTGAGGAAACAGGGAAGACCAAGGAAGTGATTGACACAGGCTACGGCATT
CTGGACCGGAAGGCCTCTGGAGTCAAGTACACCAAGTCGGACTTACGGTTAATTGAAGTCACTG
AGACCATATGCAAGAGGCTTCTGGACTACAGCCTGCACAAGGAGAGGACTGGCAGCAACCGGTT
TGCCAAGGGTATGTCGGAGACCTTTGAGACTCTGCACAACCTAGTCCACAAAGGGGTCAAGGTG
GTGATGGACATCCCCTACGAGCTGTGGAATGAGACCTCAGCTGAAGTGGCTGACCTCAAGAAGC
AGTGTGATGTGCTGGTGGAGGAATTTGAAGAGGTGATCGAGGACTGGTACAGGAACCACCAGGA
GGAAGACCTCACTCAGTTCCTGTGTGCCAACCATGTGCTGAAGGGCAAGGACACCAGTTGCCTG
GCAGAGCGGTGGTCTGGCAAGAAGGGGGACATAGCCTCCCTGGGAGGGAAGAAATCCAAGAAGA
AGCGCGGCAGGGTCAAGGGTTCCAGTGGCGGTGGCGGCGGCAGCAAGCAGAGGAAGGAACTGGG
GAGCCTGGAGGAGGACGCCAACCCAGACGAGGAGGGCGTGCAGAAGGCGTCTCCCCTTCCACAC
AGCCCCCCTGACGAGCTGTGAGCCTAGCTTAGTGTCCATGGATCAAGACCCCAGACGAGAGCTG
AAGCGCTTGGGACGTGGCTCCAGCAAGGACGGCTCTGTCCCAGTTTCCGGTCTCCTCCCTTGGC
TGTGCCCTCTTTCTTCCCTTGAACAACAAGAAGTGGAAGGATCTGGGGTGCTGGGAGTCCCCAG
CCCAAAGGGAAGAGCAGGAGGCGGCTCTCTTTCTATACAGCCCCCGTCATGAGTGGGTCCCACC
CAGCATCCCCAGGCTGCGACTCCTGACCTTGAAGCTGACGAGCATGAGGCCCACAGGGTGCTCG
CAGTGCCTCTCACCCAGGAGGGACAGAGCCCGGGAAGCACTCAGTGCAGCCTCCGTAGCCAGAC
CTGCCTCTTCCTCCACCAAGCATCCTCTCTGCCCGTCCTTGTCGGGTCTTGTCGGTCGTGAGTT
TCAGAACTTTGAGGATGAACTCAGGAGGTGTGCACAAGGGGCCGGACACCACAGCTGCAGCCAC
TCCAGACCTGCGGAGAGGACGCCTCACCTGACGCCACCGGGAAGCAAAACCACAGCCCCCATGT
CTACCCACCCTTCCTGAGGACACTCTCTGCCCAGCCCTCCTCCCCAGGGCTACCAGAATAAACA
CCTTTTGGCCTTTTGGTTTGGTTCTTGGGTCCTCTTCAGCCTCCAGAGTGCCCCCTCCCATGTC
CCTTTTCTGCCTATGTCCCCCAAGTCCCAGGTACTGGAAAGGCTGTCACTGTCATTGGAGGCTT
AACCTGCTAGTTACTAGGAGGAGCAGGTACTGGGAGCACGGGGGGTTGGTTTGGAGTCAGTCAC
TCAGAGGTTCTCAGTCTTCTAACATTGCAGCCCCTTAATACAGTTCCTCATGTTGTGGTGACCC
CCATCCCCAACCATAAAATTATTTTCGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001128182	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66762	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021868.6
	ENSRNOP00000084251.1

RefSeq Acc Id:	NP_001128182 ⟸ NM_001134710
- Peptide Label:	precursor
- UniProtKB:	A6JIM4 (UniProtKB/TrEMBL), B2RYF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESMSELAPRCLLLLLLLLPLLLLPAPKLGPSSAGAEETDWVRLPSKCEVCKYVAVELKSAFEE TGKTKEVIDTGYGILDRKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSET FETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFL CANHVLKGKDTSCLAERWSGKKGDIASLGGKKSKKKRGRVKGSSGGGGGSKQRKELGSLEEDAN PDEEGVQKASPLPHSPPDEL hide sequence

Ensembl Acc Id:

ENSRNOP00000021868 ⟸ ENSRNOT00000021868

Ensembl Acc Id:

ENSRNOP00000084251 ⟸ ENSRNOT00000100864

Protein Domains

DUF3456

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V828-F1-model_v2	AlphaFold	G3V828	1-276	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696505

Promoter ID:

EPDNEW_R7029

Type:

multiple initiation site

Name:

Cnpy3_1

Description:

canopy FGF signaling regulator 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	16,543,669 - 16,543,729	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1597709	AgrOrtholog
BioCyc Gene	G2FUF-28243	BioCyc
Ensembl Genes	ENSRNOG00000016315	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021868.9	UniProtKB/TrEMBL
	ENSRNOT00000100864.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7931606	IMAGE-MGC_LOAD
InterPro	DUF3456	UniProtKB/TrEMBL
KEGG Report	rno:685174	UniProtKB/TrEMBL
MGC_CLONE	MGC:188521	IMAGE-MGC_LOAD
NCBI Gene	685174	ENTREZGENE
PANTHER	CTG4A-RELATED	UniProtKB/TrEMBL
	PROTEIN CANOPY HOMOLOG 3	UniProtKB/TrEMBL
Pfam	DUF3456	UniProtKB/TrEMBL
PhenoGen	Cnpy3	PhenoGen
RatGTEx	ENSRNOG00000016315	RatGTEx
UniProt	A0A8I6A0W3_RAT	UniProtKB/TrEMBL
	A6JIM4	ENTREZGENE, UniProtKB/TrEMBL
	A6JIM6_RAT	UniProtKB/TrEMBL
	B2RYF8	ENTREZGENE, UniProtKB/TrEMBL
	G3V828_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-01	Cnpy3	canopy FGF signaling regulator 3	Cnpy3	canopy 3 homolog (zebrafish)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Cnpy3	canopy 3 homolog (zebrafish)	LOC685174	similar to trinucleotide repeat containing 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC685174	similar to trinucleotide repeat containing 5	LOC683377	similar to trinucleotide repeat containing 5	Data merged from RGD:1587992	1643240	APPROVED
2006-11-20	LOC685174	similar to trinucleotide repeat containing 5			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC683377	similar to trinucleotide repeat containing 5			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM