Plin3 (perilipin 3) - Rat Genome Database

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Gene: Plin3 (perilipin 3) Rattus norvegicus
Analyze
Symbol: Plin3 (Ensembl: Ticam1)
Name: perilipin 3 (Ensembl:TIR domain containing adaptor molecule 1)
RGD ID: 1595854
Description: Orthologous to human PLIN3 (perilipin 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AABR07066529.1; LOC316130; M6prbp1; mannose-6-phosphate receptor binding protein 1; perilipin-3; similar to mannose-6-phosphate receptor binding protein 1; Tip47
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Plin3-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,198,336 - 1,210,212 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl91,198,336 - 1,210,231 (-)EnsemblGRCr8
mRatBN7.291,111,178 - 1,123,057 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,102,366 - 1,123,147 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx91,556,854 - 1,568,721 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.096,904,847 - 6,916,723 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.095,861,896 - 5,873,763 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,769,739 - 10,781,659 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,773,901 - 10,781,109 (+)Ensemblrn6Rnor6.0
Rnor_5.099,761,407 - 9,773,329 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera97,386,939 - 7,398,847 (+)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,6-dimethoxyphenol  (ISO)
2-bromohexadecanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinyl palmitate  (ISO)
alpha-pinene  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
buspirone  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chloropicrin  (ISO)
chloroquine  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cytarabine  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
dibutyl phthalate  (EXP)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
fenthion  (ISO)
finasteride  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
hexadecanoic acid  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
lead(II) chloride  (ISO)
levofloxacin  (EXP)
methidathion  (ISO)
microcystin-LR  (ISO)
Monobutylphthalate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nitrates  (ISO)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
oleic acid  (ISO)
orphenadrine  (EXP)
ozone  (ISO)
p-toluidine  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
propanal  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
tolcapone  (EXP)
triphenyl phosphate  (EXP,ISO)
trovafloxacin  (EXP)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
lipid droplet  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14741744   PMID:19946888   PMID:20198297   PMID:21498505   PMID:25468996   PMID:31505169  


Genomics

Comparative Map Data
Plin3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,198,336 - 1,210,212 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl91,198,336 - 1,210,231 (-)EnsemblGRCr8
mRatBN7.291,111,178 - 1,123,057 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,102,366 - 1,123,147 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx91,556,854 - 1,568,721 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.096,904,847 - 6,916,723 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.095,861,896 - 5,873,763 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,769,739 - 10,781,659 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,773,901 - 10,781,109 (+)Ensemblrn6Rnor6.0
Rnor_5.099,761,407 - 9,773,329 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera97,386,939 - 7,398,847 (+)NCBICelera
Cytogenetic Map9q11NCBI
PLIN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,838,341 - 4,867,667 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,838,339 - 4,867,717 (-)Ensemblhg38GRCh38
GRCh37194,838,353 - 4,867,679 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,789,346 - 4,818,676 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34194,789,345 - 4,818,676NCBI
Celera194,776,278 - 4,805,688 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef194,600,618 - 4,630,086 (-)NCBIHuRef
CHM1_1194,837,970 - 4,867,350 (-)NCBICHM1_1
T2T-CHM13v2.0194,823,835 - 4,853,154 (-)NCBIT2T-CHM13v2.0
Plin3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,585,962 - 56,597,511 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,584,476 - 56,599,873 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381756,278,962 - 56,290,511 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,277,476 - 56,292,873 (-)Ensemblmm10GRCm38
MGSCv371756,418,385 - 56,429,934 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361755,912,671 - 55,924,220 (-)NCBIMGSCv36mm8
Celera1760,640,285 - 60,644,348 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.25NCBI
Plin3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554954,177,906 - 4,193,299 (+)Ensembl
ChiLan1.0NW_0049554954,177,701 - 4,190,052 (+)NCBIChiLan1.0ChiLan1.0
PLIN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2209,232,586 - 9,262,057 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,461,880 - 8,491,353 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0193,857,506 - 3,886,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1194,808,510 - 4,835,180 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl194,808,512 - 4,835,180 (-)EnsemblpanPan2panpan1.1
PLIN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,919,034 - 54,938,665 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,924,149 - 54,938,167 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2054,643,558 - 54,663,086 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02055,573,514 - 55,593,014 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2055,573,654 - 55,593,905 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12054,634,911 - 54,654,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,115,470 - 55,134,989 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02055,313,396 - 55,332,913 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Plin3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,992,322 - 215,005,247 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,829,282 - 2,842,501 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,829,536 - 2,842,427 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLIN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,969,862 - 73,995,529 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1273,970,149 - 73,995,314 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap2q22-q23NCBI
PLIN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.164,538,877 - 4,565,595 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660813,581,430 - 3,610,593 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plin3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,950,718 - 4,961,177 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248284,949,913 - 4,961,529 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Plin3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1487,670,332 - 87,681,479 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Plin3
7 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:64
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000070978
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)916094576Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9121707400Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat

Markers in Region
RH134483  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.291,111,285 - 1,111,482 (-)MAPPERmRatBN7.2
mRatBN7.22022,132,543 - 22,132,740 (+)MAPPERmRatBN7.2
Rnor_6.02023,566,923 - 23,567,119NCBIRnor6.0
Rnor_6.0910,781,357 - 10,781,553NCBIRnor6.0
Rnor_5.099,773,025 - 9,773,221UniSTSRnor5.0
Rnor_5.02025,646,916 - 25,647,112UniSTSRnor5.0
RGSC_v3.42023,019,069 - 23,019,265UniSTSRGSC3.4
Celera2023,484,940 - 23,485,136UniSTS
Celera97,398,545 - 7,398,741UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map9q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000070978   ⟹   ENSRNOP00000066344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,102,941 - 1,123,147 (-)Ensembl
Rnor_6.0 Ensembl910,773,901 - 10,781,109 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000072501   ⟹   ENSRNOP00000076995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,102,366 - 1,109,331 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111500   ⟹   ENSRNOP00000085855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl91,198,336 - 1,210,231 (-)Ensembl
mRatBN7.2 Ensembl91,110,592 - 1,118,597 (-)Ensembl
RefSeq Acc Id: NM_001399329   ⟹   NP_001386258
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,198,336 - 1,210,212 (-)NCBI
mRatBN7.291,111,178 - 1,123,057 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001386258 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL83647 (Get FASTA)   NCBI Sequence Viewer  
  EDL83648 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085855
  ENSRNOP00000085855.2
Ensembl Acc Id: ENSRNOP00000066344   ⟸   ENSRNOT00000070978
Ensembl Acc Id: ENSRNOP00000085855   ⟸   ENSRNOT00000111500
Ensembl Acc Id: ENSRNOP00000076995   ⟸   ENSRNOT00000072501
RefSeq Acc Id: NP_001386258   ⟸   NM_001399329
- UniProtKB: A0A8I6A147 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RA08-F1-model_v2 AlphaFold M0RA08 1-438 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696471
Promoter ID:EPDNEW_R6988
Type:single initiation site
Name:Plin3_1
Description:perilipin 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0910,773,858 - 10,773,918EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595854 AgrOrtholog
BioCyc Gene G2FUF-28537 BioCyc
Ensembl Genes ENSRNOG00000048462 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000048834 Ensembl
Ensembl Transcript ENSRNOT00000111500 ENTREZGENE
  ENSRNOT00000111500.2 UniProtKB/TrEMBL
Gene3D-CATH Flagellar protein FliS UniProtKB/TrEMBL
  Perilipin, alpha-beta domain UniProtKB/TrEMBL
InterPro Perilipin UniProtKB/TrEMBL
NCBI Gene 316130 ENTREZGENE
PANTHER PERILIPIN UniProtKB/TrEMBL
  PERILIPIN-3 UniProtKB/TrEMBL
Pfam Perilipin UniProtKB/TrEMBL
PhenoGen Plin3 PhenoGen
PIRSF PAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000048462 RatGTEx
  ENSRNOG00000048834 RatGTEx
Superfamily-SCOP Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain UniProtKB/TrEMBL
UniProt A0A8I6A147 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Plin3  perilipin 3  AABR07066529.1    Data merged from RGD:15005518 737654 PROVISIONAL
2019-11-08 AABR07066529.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2011-08-02 Plin3  perilipin 3  M6prbp1  mannose-6-phosphate receptor binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 M6prbp1  mannose-6-phosphate receptor binding protein 1  LOC316130  similar to mannose-6-phosphate receptor binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC316130  similar to mannose-6-phosphate receptor binding protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL