Trmt10a (tRNA methyltransferase 10A) - Rat Genome Database

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Gene: Trmt10a (tRNA methyltransferase 10A) Rattus norvegicus
Analyze
Symbol: Trmt10a
Name: tRNA methyltransferase 10A
RGD ID: 1594565
Description: Predicted to enable tRNA (guanosine(9)-N1)-methyltransferase activity and tRNA binding activity. Predicted to be involved in tRNA N1-guanine methylation. Predicted to act upstream of or within magnesium ion homeostasis. Predicted to be located in nucleolus. Predicted to be active in cytosol and nucleoplasm. Orthologous to human TRMT10A (tRNA methyltransferase 10A); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC116361; Rg9mtd2; RNA (guanine-9-) methyltransferase domain containing 2; RNA (guanine-9-)-methyltransferase domain-containing protein 2; tRNA (guanine(9)-N(1))-methyltransferase TRMT10A; tRNA methyltransferase 10 homolog A; tRNA methyltransferase 10 homolog A (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82229,342,853 - 229,357,573 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2229,342,864 - 229,360,108 (+)EnsemblGRCr8
mRatBN7.22226,669,445 - 226,684,166 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2226,669,832 - 226,684,151 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2234,408,784 - 234,422,014 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02232,308,525 - 232,321,755 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02227,173,200 - 227,186,430 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02243,422,811 - 243,437,533 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2243,422,811 - 243,438,050 (+)Ensemblrn6Rnor6.0
Rnor_5.02261,963,896 - 261,978,618 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42235,670,051 - 235,683,261 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2218,825,623 - 218,838,832 (+)NCBICelera
Cytogenetic Map2q43NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,IEA,ISO)
nucleolus  (IEA,ISO,ISS)
nucleoplasm  (IBA,IEA,ISO)
nucleus  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19056867   PMID:22658674   PMID:23042678   PMID:23870131   PMID:24204302   PMID:25053765  


Genomics

Comparative Map Data
Trmt10a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82229,342,853 - 229,357,573 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2229,342,864 - 229,360,108 (+)EnsemblGRCr8
mRatBN7.22226,669,445 - 226,684,166 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2226,669,832 - 226,684,151 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2234,408,784 - 234,422,014 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02232,308,525 - 232,321,755 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02227,173,200 - 227,186,430 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02243,422,811 - 243,437,533 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2243,422,811 - 243,438,050 (+)Ensemblrn6Rnor6.0
Rnor_5.02261,963,896 - 261,978,618 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42235,670,051 - 235,683,261 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2218,825,623 - 218,838,832 (+)NCBICelera
Cytogenetic Map2q43NCBI
TRMT10A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38499,546,711 - 99,564,039 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl499,546,709 - 99,564,039 (-)Ensemblhg38GRCh38
GRCh374100,467,868 - 100,485,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364100,686,904 - 100,703,848 (-)NCBIBuild 36Build 36hg18NCBI36
Build 344100,825,061 - 100,842,003NCBI
Celera497,765,280 - 97,782,608 (-)NCBICelera
Cytogenetic Map4q23NCBI
HuRef496,205,953 - 96,223,232 (-)NCBIHuRef
CHM1_14100,444,338 - 100,461,662 (-)NCBICHM1_1
T2T-CHM13v2.04102,861,479 - 102,878,808 (-)NCBIT2T-CHM13v2.0
Trmt10a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393137,849,214 - 137,865,582 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3137,849,209 - 137,865,582 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm383138,143,448 - 138,159,821 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3138,143,448 - 138,159,821 (+)Ensemblmm10GRCm38
MGSCv373137,806,502 - 137,822,785 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363138,080,925 - 138,097,208 (+)NCBIMGSCv36mm8
Celera3144,554,497 - 144,570,828 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map364.09NCBI
Trmt10a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554968,026,569 - 8,037,802 (+)Ensembl
ChiLan1.0NW_0049554968,021,747 - 8,037,562 (+)NCBIChiLan1.0ChiLan1.0
TRMT10A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2397,630,709 - 97,646,223 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1497,914,440 - 97,929,950 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0491,970,440 - 91,987,722 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14102,631,501 - 102,648,770 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4102,631,501 - 102,648,454 (-)EnsemblpanPan2panpan1.1
TRMT10A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13221,554,096 - 21,570,894 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3221,555,045 - 21,570,338 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3220,325,736 - 20,343,112 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03221,774,481 - 21,792,045 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3221,773,270 - 21,791,576 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13221,751,224 - 21,768,766 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03221,538,921 - 21,556,250 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03218,312,807 - 18,330,371 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Trmt10a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530120,056,582 - 20,070,786 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365203,400,019 - 3,417,843 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365203,400,029 - 3,413,867 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRMT10A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8120,879,523 - 120,917,433 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.18120,879,067 - 120,917,442 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28130,095,032 - 130,133,417 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRMT10A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1747,689,865 - 47,706,540 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl747,691,555 - 47,701,748 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603726,154,118 - 26,171,617 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trmt10a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248307,519,851 - 7,530,772 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248307,515,810 - 7,529,980 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Trmt10a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1321,001,846 - 21,016,482 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Trmt10a
124 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:246
Count of miRNA genes:166
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000014694
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2212145502231732847Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2184482291229482291Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2202029709236904960Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2219814164239320906Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2186850607231850607Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2192287802237287802Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2188565047233565047Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2192287802229609668Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2184856304229856304Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2184856304229856304Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2184856304229856304Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2184856304229856304Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2192287802237287802Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000014694   ⟹   ENSRNOP00000014694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2229,343,242 - 229,360,108 (+)Ensembl
mRatBN7.2 Ensembl2226,669,832 - 226,683,212 (+)Ensembl
Rnor_6.0 Ensembl2243,422,811 - 243,436,014 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082894   ⟹   ENSRNOP00000071908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2229,342,864 - 229,360,108 (+)Ensembl
mRatBN7.2 Ensembl2226,672,739 - 226,684,151 (+)Ensembl
Rnor_6.0 Ensembl2243,425,007 - 243,438,050 (+)Ensembl
RefSeq Acc Id: NM_001044232   ⟹   NP_001037697
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,342,853 - 229,356,063 (+)NCBI
mRatBN7.22226,669,445 - 226,682,656 (+)NCBI
Rnor_6.02243,422,811 - 243,436,020 (+)NCBI
Rnor_5.02261,963,896 - 261,978,618 (+)NCBI
RGSC_v3.42235,670,051 - 235,683,261 (+)RGD
Celera2218,825,623 - 218,838,832 (+)RGD
Sequence:
RefSeq Acc Id: XM_017590789   ⟹   XP_017446278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,343,172 - 229,357,573 (+)NCBI
mRatBN7.22226,669,811 - 226,684,166 (+)NCBI
Rnor_6.02243,423,127 - 243,437,533 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039102109   ⟹   XP_038958037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,343,219 - 229,357,573 (+)NCBI
mRatBN7.22226,669,811 - 226,684,166 (+)NCBI
RefSeq Acc Id: XM_039102110   ⟹   XP_038958038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,343,226 - 229,357,573 (+)NCBI
mRatBN7.22226,669,811 - 226,684,166 (+)NCBI
RefSeq Acc Id: NP_001037697   ⟸   NM_001044232
- UniProtKB: Q4KLI2 (UniProtKB/Swiss-Prot),   A6HW21 (UniProtKB/TrEMBL),   A0A0G2K1N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446278   ⟸   XM_017590789
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K1N0 (UniProtKB/TrEMBL),   A0A8L2Q6X6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071908   ⟸   ENSRNOT00000082894
Ensembl Acc Id: ENSRNOP00000014694   ⟸   ENSRNOT00000014694
RefSeq Acc Id: XP_038958037   ⟸   XM_039102109
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q6X6 (UniProtKB/TrEMBL),   A0A0G2K1N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958038   ⟸   XM_039102110
- Peptide Label: isoform X2
- UniProtKB: Q4KLI2 (UniProtKB/Swiss-Prot),   A6HW21 (UniProtKB/TrEMBL),   A0A0G2K1N0 (UniProtKB/TrEMBL)
Protein Domains
SAM-dependent MTase TRM10-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLI2-F1-model_v2 AlphaFold Q4KLI2 1-335 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691782
Promoter ID:EPDNEW_R2307
Type:initiation region
Name:Trmt10a_1
Description:tRNA methyltransferase 10A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02243,422,773 - 243,422,833EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594565 AgrOrtholog
BioCyc Gene G2FUF-51081 BioCyc
Ensembl Genes ENSRNOG00000011025 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000014694 ENTREZGENE
  ENSRNOT00000082894 ENTREZGENE
Gene3D-CATH 3.40.1280.30 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7383412 IMAGE-MGC_LOAD
InterPro MT_TRM10-typ UniProtKB/Swiss-Prot
  MT_TRM10-typ_sf UniProtKB/Swiss-Prot
  TRM10/TRM10A UniProtKB/Swiss-Prot
  tRNA_m1G_MeTrfase_euk UniProtKB/Swiss-Prot
  tRNA_MeTrfase_TRMD/TRM10 UniProtKB/Swiss-Prot
KEGG Report rno:295496 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116361 IMAGE-MGC_LOAD
NCBI Gene 295496 ENTREZGENE
PANTHER PTHR13563 UniProtKB/Swiss-Prot
  PTHR13563:SF13 UniProtKB/Swiss-Prot
Pfam tRNA_m1G_MT UniProtKB/Swiss-Prot
PhenoGen Trmt10a PhenoGen
PIRSF tRNA_m1G_mtfrase_met UniProtKB/Swiss-Prot
PROSITE SAM_MT_TRM10 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011025 RatGTEx
UniProt A0A0G2K1N0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q6X6 ENTREZGENE, UniProtKB/TrEMBL
  A6HW21 ENTREZGENE, UniProtKB/TrEMBL
  Q4KLI2 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-01 Trmt10a  tRNA methyltransferase 10A  Trmt10a  tRNA methyltransferase 10 homolog A (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Trmt10a  tRNA methyltransferase 10 homolog A (S. cerevisiae)  Rg9mtd2  RNA (guanine-9-) methyltransferase domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 Rg9mtd2  RNA (guanine-9-) methyltransferase domain containing 2      Symbol and Name status set to provisional 70820 PROVISIONAL