Tnfaip2 (TNF alpha induced protein 2) - Rat Genome Database

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Gene: Tnfaip2 (TNF alpha induced protein 2) Rattus norvegicus
Analyze
Symbol: Tnfaip2
Name: TNF alpha induced protein 2
RGD ID: 1594556
Description: Predicted to enable SNARE binding activity. Predicted to be involved in exocyst localization and exocytosis. Predicted to be part of exocyst. Orthologous to human TNFAIP2 (TNF alpha induced protein 2); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299339; similar to Tumor necrosis factor, alpha-induced protein 2 (Primary response gene B94 protein); tumor necrosis factor alpha-induced protein 2; tumor necrosis factor, alpha-induced protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,297,388 - 136,311,106 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6136,298,082 - 136,311,106 (+)EnsemblGRCr8
mRatBN7.26130,476,832 - 130,489,914 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,476,889 - 130,489,914 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6130,646,992 - 130,660,017 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,942,980 - 130,956,005 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,306,961 - 130,319,987 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,890,869 - 135,903,647 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,890,931 - 135,903,647 (+)Ensemblrn6Rnor6.0
Rnor_5.06144,512,073 - 144,524,734 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46136,196,746 - 136,210,410 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6128,033,680 - 128,046,938 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-tribromophenol  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
6alpha-methylprednisolone  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calciol  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
citric acid  (ISO)
clofibrate  (ISO)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
diquat  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP)
formaldehyde  (ISO)
furan  (EXP)
gamma-tocopherol  (ISO)
glafenine  (EXP)
glyphosate  (EXP)
hexadecanoic acid  (ISO)
hydroquinone  (ISO)
imidacloprid  (EXP)
ivermectin  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
manganese(II) chloride  (EXP)
methimazole  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
Muraglitazar  (EXP)
N(6)-dimethylallyladenine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
naled  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nickel subsulfide  (ISO)
nickel sulfate  (ISO)
okadaic acid  (ISO)
oleic acid  (ISO)
orphenadrine  (EXP)
oxazepam  (ISO)
ozone  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenformin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
prednisolone  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
progesterone  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium aurothiomalate  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
Tesaglitazar  (EXP)
testosterone  (EXP)
tetrachloromethane  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
tocopherol  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
exocyst  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tnfaip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,297,388 - 136,311,106 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6136,298,082 - 136,311,106 (+)EnsemblGRCr8
mRatBN7.26130,476,832 - 130,489,914 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,476,889 - 130,489,914 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6130,646,992 - 130,660,017 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,942,980 - 130,956,005 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,306,961 - 130,319,987 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,890,869 - 135,903,647 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,890,931 - 135,903,647 (+)Ensemblrn6Rnor6.0
Rnor_5.06144,512,073 - 144,524,734 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46136,196,746 - 136,210,410 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6128,033,680 - 128,046,938 (+)NCBICelera
Cytogenetic Map6q32NCBI
TNFAIP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,121,469 - 103,137,439 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,121,407 - 103,137,441 (+)Ensemblhg38GRCh38
GRCh3714103,589,798 - 103,603,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614102,662,417 - 102,673,529 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3414102,662,416 - 102,673,529NCBI
Celera1483,646,666 - 83,657,739 (+)NCBICelera
Cytogenetic Map14q32.32NCBI
HuRef1483,771,095 - 83,782,134 (+)NCBIHuRef
CHM1_114103,530,048 - 103,541,100 (+)NCBICHM1_1
T2T-CHM13v2.01497,357,363 - 97,373,355 (+)NCBIT2T-CHM13v2.0
Tnfaip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,408,898 - 111,421,452 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,408,903 - 111,421,452 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3812111,442,450 - 111,455,018 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,442,469 - 111,455,018 (+)Ensemblmm10GRCm38
MGSCv3712112,680,872 - 112,693,229 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3612111,892,770 - 111,902,825 (+)NCBIMGSCv36mm8
Celera12112,632,641 - 112,645,211 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.99NCBI
Tnfaip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555382,160,483 - 2,171,967 (+)Ensembl
ChiLan1.0NW_0049555382,159,773 - 2,173,312 (+)NCBIChiLan1.0ChiLan1.0
TNFAIP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215104,276,390 - 104,292,190 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114103,492,791 - 103,508,690 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01483,745,176 - 83,759,157 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114103,562,408 - 103,572,383 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14103,561,181 - 103,570,309 (+)EnsemblpanPan2panpan1.1
TNFAIP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,965,776 - 70,977,807 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,967,741 - 70,976,396 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha870,476,799 - 70,489,979 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0871,241,603 - 71,254,791 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl871,244,886 - 71,253,380 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,904,950 - 70,918,118 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,969,797 - 70,982,976 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,369,924 - 71,383,105 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tnfaip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,063,073 - 3,074,796 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366211,891,326 - 1,903,504 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFAIP2
(Sus scrofa - pig)		 No map positions available.
TNFAIP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12481,099,232 - 81,113,399 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2481,102,127 - 81,113,509 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605368,309,309 - 68,323,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfaip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,563,176 - 1,572,848 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247341,563,274 - 1,575,884 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tnfaip2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17129,015,927 - 129,028,496 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tnfaip2
362 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:359
Count of miRNA genes:195
Interacting mature miRNAs:233
Transcripts:ENSRNOT00000042973
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6131392689143944780Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat

Markers in Region
RH143039  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26130,476,340 - 130,476,442 (+)MAPPERmRatBN7.2
Rnor_6.06135,890,383 - 135,890,484NCBIRnor6.0
Rnor_5.06144,525,150 - 144,525,251UniSTSRnor5.0
RGSC_v3.46136,196,198 - 136,196,299UniSTSRGSC3.4
Celera6128,033,132 - 128,033,233UniSTS
RH 3.4 Map6781.2UniSTS
Cytogenetic Map6q32UniSTS
RH140274  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26130,489,517 - 130,489,711 (+)MAPPERmRatBN7.2
Rnor_6.06135,903,251 - 135,903,444NCBIRnor6.0
Rnor_5.06144,512,276 - 144,512,469UniSTSRnor5.0
RGSC_v3.46136,210,014 - 136,210,207UniSTSRGSC3.4
Celera6128,046,542 - 128,046,735UniSTS
RH 3.4 Map6782.4UniSTS
Cytogenetic Map6q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 158 91 90 59 91 59 6 355 191 11 137 81 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000042973   ⟹   ENSRNOP00000044643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6136,298,082 - 136,311,106 (+)Ensembl
mRatBN7.2 Ensembl6130,476,889 - 130,489,914 (+)Ensembl
Rnor_6.0 Ensembl6135,890,931 - 135,903,647 (+)Ensembl
RefSeq Acc Id: NM_001137633   ⟹   NP_001131105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,298,082 - 136,311,106 (+)NCBI
mRatBN7.26130,476,889 - 130,489,914 (+)NCBI
Rnor_6.06135,890,931 - 135,903,647 (+)NCBI
Rnor_5.06144,512,073 - 144,524,734 (-)NCBI
RGSC_v3.46136,196,746 - 136,210,410 (+)RGD
Celera6128,033,680 - 128,046,938 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240577   ⟹   XP_006240639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,298,016 - 136,311,103 (+)NCBI
mRatBN7.26130,476,841 - 130,489,911 (+)NCBI
Rnor_6.06135,890,869 - 135,903,644 (+)NCBI
Rnor_5.06144,512,073 - 144,524,734 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112101   ⟹   XP_038968029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,298,010 - 136,304,777 (+)NCBI
mRatBN7.26130,476,832 - 130,483,585 (+)NCBI
RefSeq Acc Id: XM_039112102   ⟹   XP_038968030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,298,011 - 136,304,802 (+)NCBI
mRatBN7.26130,476,833 - 130,483,611 (+)NCBI
RefSeq Acc Id: XM_063261786   ⟹   XP_063117856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,297,388 - 136,311,103 (+)NCBI
RefSeq Acc Id: NP_001131105   ⟸   NM_001137633
- Sequence:
RefSeq Acc Id: XP_006240639   ⟸   XM_006240577
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000044643   ⟸   ENSRNOT00000042973
RefSeq Acc Id: XP_038968029   ⟸   XM_039112101
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968030   ⟸   XM_039112102
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063117856   ⟸   XM_063261786
- Peptide Label: isoform X1
- UniProtKB: A6KBR0 (UniProtKB/TrEMBL),   D3ZYQ3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZYQ3-F1-model_v2 AlphaFold D3ZYQ3 1-691 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694840
Promoter ID:EPDNEW_R5363
Type:single initiation site
Name:Tnfaip2_2
Description:TNF alpha induced protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5364  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06135,890,864 - 135,890,924EPDNEW
RGD ID:13694841
Promoter ID:EPDNEW_R5364
Type:single initiation site
Name:Tnfaip2_1
Description:TNF alpha induced protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5363  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06135,891,124 - 135,891,184EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594556 AgrOrtholog
BioCyc Gene G2FUF-35847 BioCyc
Ensembl Genes ENSRNOG00000010165 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042973.6 UniProtKB/TrEMBL
Gene3D-CATH 1.10.357.50 UniProtKB/TrEMBL
  1.10.357.70 UniProtKB/TrEMBL
InterPro EXOC3/Sec6_C UniProtKB/TrEMBL
  Sec6 UniProtKB/TrEMBL
KEGG Report rno:299339 UniProtKB/TrEMBL
NCBI Gene 299339 ENTREZGENE
PANTHER Sec6 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR ALPHA-INDUCED PROTEIN 2 UniProtKB/TrEMBL
Pfam Sec6 UniProtKB/TrEMBL
PhenoGen Tnfaip2 PhenoGen
RatGTEx ENSRNOG00000010165 RatGTEx
UniProt A6KBR0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZYQ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Tnfaip2  TNF alpha induced protein 2  Tnfaip2  tumor necrosis factor, alpha-induced protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Tnfaip2  tumor necrosis factor, alpha-induced protein 2  LOC299339  similar to Tumor necrosis factor, alpha-induced protein 2 (Primary response gene B94 protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC299339  similar to Tumor necrosis factor, alpha-induced protein 2 (Primary response gene B94 protein)      Symbol and Name status set to provisional 70820 PROVISIONAL