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Gene: Prdm2 (PR/SET domain 2) Rattus norvegicus

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Symbol:

Prdm2

Name:

PR/SET domain 2

RGD ID:

1594531

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; DNA-binding transcription repressor activity, RNA polymerase II-specific; and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in response to estradiol. Predicted to be active in nucleus. Orthologous to human PRDM2 (PR/SET domain 2); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

PR domain 2; PR domain containing 2, with ZNF domain; PR domain containing 2, with ZNF domain (mapped); PR domain zinc finger protein 2; PR domain-containing protein 2; Prdm2_mapped; retinoblastoma interacting zinc finger protein; retinoblastoma protein-binding zinc finger protein; retinoblastoma protein-interacting zinc finger protein; Riz; zinc finger protein RIZ

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRDM2 (PR/SET domain 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Prdm2 (PR domain containing 2, with ZNF domain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prdm2 (PR/SET domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRDM2 (PR/SET domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRDM2 (PR/SET domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prdm2 (PR/SET domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRDM2 (PR/SET domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRDM2 (PR/SET domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prdm2 (PR/SET domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Prdm2 (PR/SET domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PRDM2 (PR/SET domain 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Prdm2 (PR domain containing 2, with ZNF domain)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prdm2a (PR domain containing 2, with ZNF domain a)	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	prdm2b (PR domain containing 2, with ZNF domain b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	prdm2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	160,704,396 - 160,815,184 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	160,705,462 - 160,815,140 (-)	Ensembl				GRCr8
mRatBN7.2	5	155,421,066 - 155,531,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	155,422,134 - 155,531,825 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	158,106,645 - 158,216,138 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	159,879,929 - 159,989,430 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	159,861,245 - 159,970,147 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	161,769,587 - 161,879,150 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	161,770,653 - 161,879,133 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	165,468,778 - 165,578,775 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	161,962,929 - 162,072,519 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	153,753,320 - 153,860,334 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amphetamine abuse (ISO)

Contracture (ISO)

Thyroid Neoplasms (ISO)

urinary bladder cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amiodarone (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bortezomib (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

ciguatoxin CTX1B (ISO)

cobalt dichloride (EXP,ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dimethyl sulfoxide (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

fenthion (ISO)

fenvalerate (EXP)

fonofos (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

glyphosate (EXP)

indometacin (ISO)

inulin (ISO)

L-citrulline (ISO)

methamphetamine (ISO)

methidathion (ISO)

methimazole (EXP)

methotrexate (ISO)

N,N-diethyl-m-toluamide (EXP)

nitrates (ISO)

nitric oxide (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

parathion (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

potassium dichromate (ISO)

resveratrol (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

succimer (ISO)

sulfadimethoxine (EXP)

tamibarotene (ISO)

terbufos (ISO)

tetrachloromethane (ISO)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA)

determination of adult lifespan (ISO)

DNA-templated transcription (IEA)

methylation (IEA)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA)

response to estradiol (IDA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA,ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA,ISO)

histone H3K9 trimethyltransferase activity (IEA)

histone methyltransferase activity (IEA)

metal ion binding (IEA)

methyltransferase activity (IEA)

protein binding (IPI,ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA,ISO)

sequence-specific DNA binding (IEA,ISO)

transferase activity (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	The retinoblastoma-interacting zinc-finger protein RIZ is a downstream effector of estrogen action.	Abbondanza C, etal., Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3130-5.
2.	Histone lysine methylation dynamics: establishment, regulation, and biological impact.	Black JC, etal., Mol Cell. 2012 Nov 30;48(4):491-507. doi: 10.1016/j.molcel.2012.11.006.
3.	The retinoblastoma protein binds to RIZ, a zinc-finger protein that shares an epitope with the adenovirus E1A protein.	Buyse IM, etal., Proc Natl Acad Sci U S A. 1995 May 9;92(10):4467-71.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8654390	PMID:9334209	PMID:11544182	PMID:27573876

Genomics

Comparative Map Data

Prdm2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	160,704,396 - 160,815,184 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	160,705,462 - 160,815,140 (-)	Ensembl				GRCr8
mRatBN7.2	5	155,421,066 - 155,531,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	155,422,134 - 155,531,825 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	158,106,645 - 158,216,138 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	159,879,929 - 159,989,430 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	159,861,245 - 159,970,147 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	161,769,587 - 161,879,150 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	161,770,653 - 161,879,133 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	165,468,778 - 165,578,775 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	161,962,929 - 162,072,519 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	153,753,320 - 153,860,334 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

PRDM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	13,700,188 - 13,825,079 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	13,700,188 - 13,825,079 (+)	Ensembl			hg38	GRCh38
GRCh37	1	14,026,683 - 14,151,574 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	13,903,937 - 14,024,162 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	13,776,655 - 13,859,875	NCBI
Celera	1	12,508,705 - 12,633,526 (+)	NCBI		Celera
Cytogenetic Map	1	p36.21	NCBI
HuRef	1	12,544,696 - 12,669,465 (+)	NCBI		HuRef
CHM1_1	1	13,825,064 - 13,950,026 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	13,142,270 - 13,267,189 (+)	NCBI		T2T-CHM13v2.0

Prdm2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	142,833,961 - 142,939,560 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	142,833,961 - 142,939,565 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	143,107,391 - 143,212,769 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	143,107,391 - 143,212,995 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	142,697,294 - 142,802,612 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	142,394,156 - 142,479,396 (-)	NCBI		MGSCv36	mm8
Celera	4	144,915,482 - 145,028,265 (-)	NCBI		Celera
Cytogenetic Map	4	E1	NCBI
cM Map	4	76.84	NCBI

Prdm2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	4,012,332 - 4,105,311 (-)	Ensembl
ChiLan1.0	NW_004955527	4,005,410 - 4,105,376 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRDM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	213,094,678 - 213,224,420 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	212,342,327 - 212,472,168 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	12,838,201 - 12,963,735 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	13,853,829 - 13,910,800 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	13,853,895 - 13,961,610 (+)	Ensembl			panPan2	panpan1.1
PanPan1.1 Ensembl	1	13,853,895 - 13,961,610 (+)	NCBI			panPan2	panpan1.1

PRDM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	83,381,021 - 83,429,640 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	83,382,552 - 83,465,687 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	79,917,102 - 80,036,570 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	84,031,028 - 84,150,815 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	84,031,037 - 84,150,473 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	80,784,169 - 80,888,460 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	81,802,556 - 81,922,434 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	82,869,382 - 82,989,085 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Prdm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	36,081,381 - 36,129,727 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	1,862,898 - 1,949,500 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	1,910,026 - 1,924,900 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRDM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	73,118,177 - 73,239,423 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	73,135,872 - 73,240,271 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	67,387,475 - 67,455,877 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRDM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	118,437,171 - 118,565,554 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	118,436,717 - 118,550,461 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	22,166,785 - 22,295,971 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prdm2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	276,893 - 384,270 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624764	261,451 - 384,270 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Prdm2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	14,953,841 - 15,059,287 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Prdm2
749 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	91
Count of miRNA genes:	82
Interacting mature miRNAs:	85
Transcripts:	ENSRNOT00000041175
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
1549904	Neuinf1	Neuroinflammation QTL 1	3	0	nervous system integrity trait (VT:0010566)	blood T lymphocyte count (CMO:0000110)	5	160111176	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	160071170	172129029	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	156396728	167181764	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	156289283	171137955	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat

Markers in Region

D5Got96

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	155,532,103 - 155,532,450 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	161,879,412 - 161,879,758	NCBI	Rnor6.0
Rnor_5.0	5	165,578,603 - 165,578,949	UniSTS	Rnor5.0
RGSC_v3.4	5	162,072,797 - 162,073,144	RGD	RGSC3.4
RGSC_v3.4	5	162,072,798 - 162,073,144	UniSTS	RGSC3.4
Celera	5	153,860,613 - 153,860,959	UniSTS
RGSC_v3.1	5	162,082,986 - 162,083,332	RGD
RH 3.4 Map	5	1058.6	UniSTS
RH 3.4 Map	5	1058.6	RGD
RH 2.0 Map	5	1091.8	RGD
Cytogenetic Map	5	q36	UniSTS

42.MMHAP20FRF12.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	155,499,161 - 155,499,335 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	161,847,761 - 161,847,934	NCBI	Rnor6.0
Rnor_5.0	5	165,546,952 - 165,547,125	UniSTS	Rnor5.0
RGSC_v3.4	5	162,040,518 - 162,040,691	UniSTS	RGSC3.4
Celera	5	153,830,112 - 153,830,285	UniSTS
Cytogenetic Map	5	q36	UniSTS

BE120443

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	155,446,444 - 155,446,597 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	161,794,757 - 161,794,909	NCBI	Rnor6.0
Rnor_5.0	5	165,493,948 - 165,494,100	UniSTS	Rnor5.0
RGSC_v3.4	5	161,987,221 - 161,987,373	UniSTS	RGSC3.4
Celera	5	153,777,437 - 153,777,589	UniSTS
RH 3.4 Map	5	1057.9	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH135296

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	155,422,169 - 155,422,381 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	161,770,689 - 161,770,900	NCBI	Rnor6.0
Rnor_5.0	5	165,469,880 - 165,470,091	UniSTS	Rnor5.0
RGSC_v3.4	5	161,962,965 - 161,963,176	UniSTS	RGSC3.4
Celera	5	153,753,356 - 153,753,567	UniSTS
RH 3.4 Map	5	1058.2	UniSTS
Cytogenetic Map	5	q36	UniSTS

ksks160

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	155,447,866 - 155,448,175 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	161,796,179 - 161,796,487	NCBI	Rnor6.0
Rnor_5.0	5	165,495,370 - 165,495,678	UniSTS	Rnor5.0
RGSC_v3.4	5	161,988,643 - 161,988,951	UniSTS	RGSC3.4
Celera	5	153,778,859 - 153,779,167	UniSTS
Cytogenetic Map	5	q36	UniSTS

PMC312773P3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	155,479,438 - 155,479,558 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	161,827,987 - 161,828,106	NCBI	Rnor6.0
Rnor_5.0	5	165,527,178 - 165,527,297	UniSTS	Rnor5.0
RGSC_v3.4	5	162,020,799 - 162,020,918	UniSTS	RGSC3.4
Celera	5	153,810,393 - 153,810,512	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001077648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U17837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041175 ⟹ ENSRNOP00000046011

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	160,705,462 - 160,815,140 (-)	Ensembl
mRatBN7.2 Ensembl	5	155,422,134 - 155,531,825 (-)	Ensembl
Rnor_6.0 Ensembl	5	161,770,653 - 161,879,133 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078237 ⟹ ENSRNOP00000072686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	161,773,758 - 161,875,362 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000124287 ⟹ ENSRNOP00000106619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	160,705,462 - 160,780,912 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168952 ⟹ ENSRNOP00000111833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	160,705,462 - 160,780,912 (-)	Ensembl

RefSeq Acc Id:

NM_001077648 ⟹ NP_001071116

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	160,705,462 - 160,815,140 (-)	NCBI
mRatBN7.2	5	155,422,134 - 155,531,825 (-)	NCBI
Rnor_6.0	5	161,770,653 - 161,879,133 (-)	NCBI
Rnor_5.0	5	165,468,778 - 165,578,775 (-)	NCBI
RGSC_v3.4	5	161,962,929 - 162,072,519 (-)	RGD
Celera	5	153,753,320 - 153,860,334 (-)	RGD

Sequence:

show sequence

GCCAAGATGGCGGCGGCGCGGCCGCGGGCGCCAGGGCGACGGCGGCGGCTGAGGCTCTGGGCTC
GCTGAAGCGTTGGCACGTCGCGCTCTGGGCTCATGTAATCAAAGAAGTTTCTTTGTTGTGTGTA
TCTTCACAGAACACAACAGGAATTGAAAATGCATCAGAACACTGAGTCTGTGGCAGCCACTGAG
ACTCTGGCTGAGGTACCTGAACATGTGCTTCGAGGACTTCCAGAGGAAGTAAGACTTTTCCCAT
CTGCAGTCGACAAGACTCGGATTGGTGTCTGGGCTACTAAACCAATTTTAAAAGGGAAAAAGTT
TGGGCCATTTGTTGGTGATAAGAAGAAGAGATCCCAGGTTAGGAATAATGTGTACATGTGGGAG
GTCTACTACCCAAATTTGGGGTGGATGTGCATTGATGCCACCGATCCGGAGAAGGGCAACTGGC
TACGCTATGTGAACTGGGCTTGCTCAGGAGAAGAGCAGAATTTATTTCCACTGGAAATCAACAG
AGCCATTTACTATAAAACCTTAAAGCCAATCGCGCCTGGCGAGGAGCTCCTGGTCTGGTACAAT
GGGGAAGACAACCCTGAGATAGCAGCTGCGATTGAGGAAGAGCGAGCCAGCGCCCGGAGCAAGC
GGAGCTCCCCGAAGAGCCGCAGAGGGAAGAAGAAATCACACGAGAACAAAAACAAAGGCATCAG
AACCCACCCCACACAGCTGAAGGCAAGTGAGCTGGACTCTACCTTTGCAAACATGAGGGGCTCT
GCAGAAGGTCCAAAAGAAGAGGATGAGAGGCCTTTGGCTTCGGCACCTGAGCAGCCAGCCCCTC
TGCCGGAGGTGGGGAACCAAGATGCAGTTCCACAGGTGGCCATCCCTCTCCCTGCCTGCGAGCC
ACAGCCAGAGGTAGATGGGAAACAAGAAGTCACAGACTGTGAGGTCAATGATGTGGAGGAAGAG
GAGCTGGAAGAGGAAGAGGAGCTGGAAGAGGAGGAGGAGGAGGAGTTGGGAGAAGATGGGGTAG
AAGAAGCAGACATGCCGAATGAAAGCTCTGCGAAAGAGCCGGAGATCCGGTGTGAAGAAAAGCC
AGAAGACTTATTAGAAGAGCCACAGAGCATGTCGAATGAAGCTCGTGAAGACTCTCCAGACGTG
ACCCCTCCTCCCCACACTCCCAGAGCTAGAGAGGAGGCCAACGGTGATGTACTTGAGACATTTA
TGTTTCCGTGTCAGCACTGTGAAAGAAAATTTGCAACGAAGCAGGGGCTAGAGCGTCACATGCA
CATCCACATTTCTACCATCAATCATGCTTTCAAGTGCAAGTACTGTGGGAAACGGTTTGGCACA
CAGATTAACAGGAGGCGGCATGAACGGCGCCACGAAACGGGGTTGAAGAGAAGACCCAGCATGA
CTTTACAGTCCTCAGAGGATCCAGATGATGGCAAGGGGGAAAATGTTACTTCTAAAGATGAGTC
AAGTCCACCTCAACTCGGGCAAGACTGTTTGATATTGAACTCAGAGAAAACCTCACAGGAAGTA
CTGAATTCATCTTTTGTGGAAGAAAATGGTGAAGTTAAAGAACTTCATCCGTGCAAATACTGCA
AAAAGGTATTTGGAACTCACACCAATATGAGACGACATCAGCGTAGAGTTCATGAGCGCCACCT
GATTCCCAAAGGTGTCAGGCGAAAAGGAGGACTTCTGGAAGAGCCACAGCCACCAGCAGAGCAG
GCTCCACCCTCCCAGAATGTCTATGTCCCAAGCACAGAGCCAGAGGAGGAAGGGGAAACAGATG
ACGTGTACATCATGGACATTTCTAGCAACATCTCTGAAAACCTAAATTACTATATTGACGGTAA
GATTCAGACCAACAGCAGCACTAGTAACTGTGATGTGATTGAGATGGAGTCTAATTCTGCACAC
TTGTATGGCATAGACTGTCTGCTCACTCCAGTGACCGTGGAGATTACTCAGAACATAAAGAGCA
CTCAGGTCTCTGTGACAGATGATCTTCTCAAAGACTCTCCCAGCAGCACAAATTGTGAGTCTAA
GAAACGGAGGACTGCCAGTCCACCTGTGCTCCCCAAAATTAAAACGGAGACGGAGTCTGATTCC
ACAGCACCCTCGTGTTCCTTAAGTCTGCCCCTGAGCATATCCACAGCCGAGGTGGTGTCCTTCC
ATAAAGAGAAGGGCGTCTATTTGTCGTCCAAGCTCAAGCAGCTTCTTCAGACCCAGGACAAGCT
GACCCTTCCTGCAGGGTTTTCAGCAGCTGAGATTCCTAAGTTAGGTCCCGTGTGCGCGTCTGCT
CCTGCATCCATGTTGCCCGTGACCTCTAGTAGGTTTAAGAGACGCACCAGCTCTCCACCGAGCT
CTCCACAGCACAGCCCTGCCCTTCGAGACTTCGGGAAACCAAATGATGGGAAAGCAGCATGGAC
AGACACAGTCCTGACTTCCAAGAAACCCAAGTTAGAAAGTCGTAGTGACTCACCAGCATGGAGT
TTGTCTGGGAGAGATGAAAGAGAAACCGGAAGCCCTCCTTGCTTTGATGAATACAAAATATCAA
AGGAATGGGCAGCCAGTTCTACTTTCAGCAGTGTGTGCAACCAACAGCCATTGGATTTATCCAG
CGGGGTCAAACAGAAGTCAGAGGGCACAGGCAAGACTCCAGTCCCATGGGAATCTGTATTGGAT
CTCAGTGTGCATAAAAAGCCTTGCGATTCTGAAGGCAAGGAATTCAAAGAGAACCATTTGGCAC
AGCCAGCTGCAAAGAAGAAAAAACCAACCACCTGTATGCTTCAAAAGGTTCTTCTCAATGAGTA
TAATGGTGTTAGCTTACCTACAGAAACCACACCAGAGGTGACCAGGAGCCCAAGTCCTTGTAAA
TCCCCAGATACACAGCCAGATCCTGAACTTGGTCCTGACTCAAGTTGCTCAGTCCCCACTGCTG
AGTCTCCACCTGAAGTTGTTGGCCCTTCCTCACCCCCTCTCCAGACAGCCTCCTTATCCTCCGG
TCAGCTGCCTCCTCTCTTAACCCCCACAGAGCCTTCTTCCCCTCCCCCCTGCCCTCCTGTGTTA
ACTGTTGCCACTCCACCACCTCCCCTCCTTCCAACCGTCCCTCTCTCCCACCCCTCTTCTGATG
CCTCCCCTCAGCAGTGTCCCTCTCCGTTCTCAAACACCACTGCTCAGTCTCCTCTTCCCATTCT
CTCCCCAACAGTGTCTCCCTCTCCCTCTCCCATTCCTCCTGTAGAGCCACTTATGTCTGCTGCT
TCCCCTGGTCCCCCAACACTTTCTTCCTCCTCCTCTTCTTCCTCTTCCTTCCCTTCCTCTTCCT
GCTCCTCCACCTCCCCCTCCCCACCCCCTCTTTCAGCAGTGTCATCTGTGGTTTCCTCTGGGGA
CAACCTGGAGGCATCTCTGCCTGCAGTAACTTTCAAACAGGAGGAGTCAGAGAGTGAAGGTCTG
AAACCCAAGGAAGAGGCCCCACCTGCAGGGGGACAGAGTGTGGTCCAAGAAACATTCAGCAAAA
ACTTCATTTGCAATGTCTGTGAATCGCCTTTTCTTTCCATTAAAGACCTAACCAAACATTTATC
CGTCCATGCTGAAGAGTGGCCCTTCAAATGTGAGTTTTGTGTGCAGCTGTTTAAGGTTAAGACT
GATCTATCAGAGCATCGATTTCTGCTTCATGGGGTTGGAAATATCTTTGTGTGTTCTGTATGTA
AGAAAGAATTTGCCTTCTTATGCAATCTGCAGCAGCACCAGCGTGATCTCCACCCAGATGAGGT
ATGCACACACCACGAGTTTGAAAGTGGGACCCTGAGGCCCCAGAACTTCACAGACCCCAGCAAG
GCCAATGTTGAGCATATGCCAAGTTTGCCAGAAGAGCCTTTAGAAACTTCTAGAGAGGAGGAGT
TAAATGATTCCTCTGAAGAGCTTTACACGACCATCAAAATAATGGCTTCTGGAATAAAGACGAA
GGATCCAGATGTTCGACTTGGTCTCAACCAGCACTACCCGAGCTTTAAACCTCCTCCATTTCAG
TACCACCATCGAAACCCTATGGGGATAGGGGTGACAGCCACCAACTTCACCACCCACAATATTC
CACAGACTTTCACTACTGCCATCCGCTGCACAAAGTGTGGGAAGGGCGTCGACAATATGCCTGA
GCTGCATAAGCATATCTTGGCGTGTGCGTCTGCAAGTGACAAGAAGAGGTACACCCCTAAGAAA
AACCCAGTGCCCCTGAAACAAACTGTGCAGCCCAAAAATGGAGTGGTGGTTCTAGACAACTCTG
GGAAAAATGCCTTCAGACGGATGGGGCAGCCCAAGAGACTGAGCTTCAATGTTGAACTGGGTAA
AATGTCTCCAAACAAGCTCAAGCTGAGTGCGCTGAAGAAGAAAAACCAGCTGGTGCAGAAGGCC
ATCCTTCAGAAGAACAGAGCCGCGAAGCAGAAGGCGGACCTGAGGGATACTTCCGAGGCGTCCT
CACACATCTGCCCGTACTGTGACAGGGAGTTCACATACATTGGCAGCCTGAATAAGCATGCCGC
CTTCAGCTGTCCTAAAAAACCTCTTTCTCCTTCCAAAAGAAAAGTTTCCCATTCGTCTAAGAAA
GGTGGCCATGCATCATCTTCTAGCAGTGACAGAAACAGCAGCTGCCACCCCCGGAGGCGGACTG
CAGATACCGAGATCAAGATGCAGAGCACGCAGGCACCCTTGGGCAAGACCAGAGCTCGGAGTAC
AGGCCCCGCCCAGGCCTCACTGCCCTCCTCGTCCTTCAGATCCAGACAGAATGTCAAATTTGCA
GCTTCAGTGAAATCCAAAAAAGCAAGCTCTTCATCCTTGAGGAATTCCAGTCCCATAAGAATGG
CCAAAATTACTCACGTCGAGGGCAAAAAACCCAAAGCTGTTGCCAAGAGTCATTCTGCTCAGCT
CTCAAGCAAATCCTCCCGAGGCCTGCATGTCAGAGTGCAGAAGAGCAAAGCTGTCATACAGAGC
AAGACTGCCCTGGCCAGTAAGAGGAGAACAGACCGGTTCATAGTGAAATCTAGAGAGCGCAGCG
GGGGCCCAATCACCCGAAGCCTTCAGCTGGCAGCTGCTGCGGACCTGAGTGAAAGCAGGAGAGA
GGACAGCAGTGCCAGGCATGAGCTGAAGGACTTCAGCTACAGTCTCCGCCTGGCATCTCGATGC
GGCTCATCAACAGCCTCTTACATCACCAGACAATGCAGAAAGGTCAAGGCCGCCGCAGCAACTC
CGTTCCAGGGACCCTTCCTCAAAGAGTAGGCACTCTGTCTGCTCCTTAACAGCACCTGAAGTGA
CCTGGAATCAGTGAAGCCAAAGGGACCAGCAGTCTGCCCTGCAGAGAGCACTGACCTCTCCCAG
TTGTGAGAGTGAGAGAACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAT
GAGAATGTGTGTGTGTGTGTGCTGGTGCATGTGTGTGGTCTTCAAGCCAAGGTCCCAGCCTCAG
GAGCAGGACCTTCCCATTTCCCGTCATCCTCTGGATGATCCTTGGACGTGGCCCAGAACCGTGC
TCTGTGGTGCAGCCATCCTGCCCGGGAGGGGCATCTCCTTCTATGCAATTTTTTTAAAGAGTTC
CTTGGCCCTGCTTTGTGCTTCTTGAGCTGTCCGTTTGCCACCACTGGGACTTGGATCTGGCCCT
GAGGGGTGGGGAAGAGGGCCTATCTAAGGATAACCTTTCAGAGGTCAAGCTCCCCTTCATGCCA
CCCCTCCCCCCTGCCCTCACCGACCTTTTCCCCACACTGTCTCTGGGAATCAATAGCAGATAGC
ATATAGATCCATCAGGGTTGAGCCTGAACCTCGGCCCTAGCACTAGGAAATCCCCCTTTTCTCC
CTAAGCAACTGGAGCCGCCAGCTTTCAAGTCATTTCCTCCTTTGAGGTTCTAGAGTCCGAGAGT
CTGCTCCGAAGTCTCTCCTGGGAACCCGGGAGCCCTCGCACCCAGGACGCAGACTCTGTGCCCA
TTCTTAGACCTGAGGTAGAAGAAGCAGTGTTTTGGGACGATAGGGTGGAGGCGTGCCTACTTTG
TCTCCTCTGGTGGGACCTCCTACATCATTGGCATCTGAACCTTGCAAGTTCGCTGCAAAGAGAA
GCAAAGGA

hide sequence

RefSeq Acc Id:

XM_017593426 ⟹ XP_017448915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	160,708,565 - 160,815,151 (-)	NCBI
mRatBN7.2	5	155,421,066 - 155,531,852 (-)	NCBI
Rnor_6.0	5	161,769,587 - 161,879,138 (-)	NCBI

Sequence:

show sequence

CCGAAGCCAAGATGGCGGCGGCGCGGCCGCGGGCGCCAGGGCGACGGCGGCGGCTGAGGCTCTG
GGCTCGCTGAAGCGTTGGCACGTCGCGCTCTGGAATATCTGAATGATCTCAGTACAATGAAGGA
GTGCCTTTTCCTTTCTACCCTGCCTCCTTGAAGCATGCATTAGAGTCGTTGTATGTAGTAAACC
TGGGCTCATGTAATCAAAGAAGTTTCTTTGTTGTGTGTATCTTCACAGAACACAACAGGAATTG
AAAATGCATCAGAACACTGAGTCTGTGGCAGCCACTGAGACTCTGGCTGAGGTACCTGAACATG
TGCTTCGAGGACTTCCAGAGGAAGTAAGACTTTTCCCATCTGCAGTCGACAAGACTCGGATTGG
TGTCTGGGCTACTAAACCAATTTTAAAAGGGAAAAAGTTTGGGCCATTTGTTGGTGATAAGAAG
AAGAGATCCCAGGTTAGGAATAATGTGTACATGTGGGAGGTCTACTACCCAAATTTGGGGTGGA
TGTGCATTGATGCCACCGATCCGGAGAAGGGCAACTGGCTACGCTATGTGAACTGGGCTTGCTC
AGGAGAAGAGCAGAATTTATTTCCACTGGAAATCAACAGAGCCATTTACTATAAAACCTTAAAG
CCAATCGCGCCTGGCGAGGAGCTCCTGGTCTGGTACAATGGGGAAGACAACCCTGAGATAGCAG
CTGCGATTGAGGAAGAGCGAGCCAGCGCCCGGAGCAAGCGGAGCTCCCCGAAGAGCCGCAGAGG
GAAGAAGAAATCACACGAGAACAAAAACAAAGGCATCAGAACCCACCCCACACAGCTGAAGGCA
AGTGAGCTGGACTCTACCTTTGCAAACATGAGGGGCTCTGCAGAAGGTCCAAAAGAAGAGGATG
AGAGGCCTTTGGCTTCGGCACCTGAGCAGCCAGCCCCTCTGCCGGAGGTGGGGAACCAAGATGC
AGTTCCACAGGTGGCCATCCCTCTCCCTGCCTGCGAGCCACAGCCAGAGGTAGATGGGAAACAA
GAAGTCACAGACTGTGAGGTCAATGATGTGGAGGAAGAGGAGCTGGAAGAGGAAGAGGAGCTGG
AAGAGGAGGAGGAGGAGGAGTTGGGAGAAGATGGGGTAGAAGAAGCAGACATGCCGAATGAAAG
CTCTGCGAAAGAGCCGGAGATCCGGTGTGAAGAAAAGCCAGAAGACTTATTAGAAGAGCCACAG
AGCATGTCGAATGAAGCTCGTGAAGACTCTCCAGACGTGACCCCTCCTCCCCACACTCCCAGAG
CTAGAGAGGAGGCCAACGGTGATGTACTTGAGACATTTATGTTTCCGTGTCAGCACTGTGAAAG
AAAATTTGCAACGAAGCAGGGGCTAGAGCGTCACATGCACATCCACATTTCTACCATCAATCAT
GCTTTCAAGTGCAAGTACTGTGGGAAACGGTTTGGCACACAGATTAACAGGAGGCGGCATGAAC
GGCGCCACGAAACGGGGTTGAAGAGAAGACCCAGCATGACTTTACAGTCCTCAGAGGATCCAGA
TGATGGCAAGGGGGAAAATGTTACTTCTAAAGATGAGTCAAGTCCACCTCAACTCGGGCAAGAC
TGTTTGATATTGAACTCAGAGAAAACCTCACAGGAAGTACTGAATTCATCTTTTGTGGAAGAAA
ATGGTGAAGTTAAAGAACTTCATCCGTGCAAATACTGCAAAAAGGTATTTGGAACTCACACCAA
TATGAGACGACATCAGCGTAGAGTTCATGAGCGCCACCTGATTCCCAAAGGTGTCAGGCGAAAA
GGAGGACTTCTGGAAGAGCCACAGCCACCAGCAGAGCAGGCTCCACCCTCCCAGAATGTCTATG
TCCCAAGCACAGAGCCAGAGGAGGAAGGGGAAACAGATGACGTGTACATCATGGACATTTCTAG
CAACATCTCTGAAAACCTAAATTACTATATTGACGGTAAGATTCAGACCAACAGCAGCACTAGT
AACTGTGATGTGATTGAGATGGAGTCTAATTCTGCACACTTGTATGGCATAGACTGTCTGCTCA
CTCCAGTGACCGTGGAGATTACTCAGAACATAAAGAGCACTCAGGTCTCTGTGACAGATGATCT
TCTCAAAGACTCTCCCAGCAGCACAAATTGTGAGTCTAAGAAACGGAGGACTGCCAGTCCACCT
GTGCTCCCCAAAATTAAAACGGAGACGGAGTCTGATTCCACAGCACCCTCGTGTTCCTTAAGTC
TGCCCCTGAGCATATCCACAGCCGAGGTGGTGTCCTTCCATAAAGAGAAGGGCGTCTATTTGTC
GTCCAAGCTCAAGCAGCTTCTTCAGACCCAGGACAAGCTGACCCTTCCTGCAGGGTTTTCAGCA
GCTGAGATTCCTAAGTTAGGTCCCGTGTGTGCGTCTGCTCCTGCATCCATGTTGCCCGTGACCT
CTAGTAGGTTTAAGAGACGCACCAGCTCTCCACCGAGCTCTCCACAGCACAGCCCTGCCCTTCG
AGACTTCGGGAAACCAAATGATGGGAAAGCAGCATGGACAGACACAGTCCTGACTTCCAAGAAA
CCCAAGTTAGAAAGTCGTAGTGACTCACCAGCATGGAGTTTGTCTGGGAGAGATGAAAGAGAAA
CCGGAAGCCCTCCTTGCTTTGATGAATACAAAATATCAAAGGAATGGGCAGCCAGTTCTACTTT
CAGCAGTGTGTGCAACCAACAGCCATTGGATTTATCCAGCGGGGTCAAACAGAAGTCAGAGGGC
ACAGGCAAGACTCCAGTCCCATGGGAATCTGTATTGGATCTCAGTGTGCATAAAAAGCCTTGCG
ATTCTGAAGGCAAGGAATTCAAAGAGAACCATTTGGCACAGCCAGCTGCAAAGAAGAAAAAACC
AACCACCTGTATGCTTCAAAAGGTTCTTCTCAATGAGTATAATGGTGTTAGCTTACCTACAGAA
ACCACACCAGAGGTGACCAGGAGCCCAAGTCCTTGTAAATCCCCAGATACACAGCCAGATCCTG
AACTTGGTCCTGACTCAAGTTGCTCAGTCCCCACTGCTGAGTCTCCACCTGAAGTTGTTGGCCC
TTCCTCACCCCCTCTCCAGACAGCCTCCTTATCCTCCGGTCAGCTGCCTCCTCTCTTAACCCCC
ACAGAGCCTTCTTCCCCTCCCCCCTGCCCTCCTGTGTTAACTGTTGCCACTCCACCACCTCCCC
TCCTTCCAACCGTCCCTCTCTCCCACCCCTCTTCTGATGCCTCCCCTCAGCAGTGTCCCTCTCC
GTTCTCAAACACCACTGCTCAGTCTCCTCTTCCCATTCTCTCCCCAACAGTGTCTCCCTCTCCC
TCTCCCATTCCTCCTGTAGAGCCACTTATGTCTGCTGCTTCCCCTGGTCCCCCAACACTTTCTT
CCTCCTCCTCTTCTTCCTCTTCCTTCCCTTCCTCTTCCTGCTCCTCCACCTCCCCCTCCCCACC
CCCTCTTTCAGCAGTGTCATCTGTGGTTTCCTCTGGGGACAACCTGGAGGCATCTCTGCCTGCA
GTAACTTTCAAACAGGAGGAGTCAGAGAGTGAAGGTCTGAAACCCAAGGAAGAGGCCCCACCTG
CAGGGGGACAGAGTGTGGTCCAAGAAACATTCAGCAAAAACTTCATTTGCAATGTCTGTGAATC
GCCTTTTCTTTCCATTAAAGACCTAACCAAACATTTATCCGTCCATGCTGAAGAGTGGCCCTTC
AAATGTGAGTTTTGTGTGCAGCTGTTTAAGGTTAAGACTGATCTATCAGAGCATCGATTTCTGC
TTCATGGGGTTGGAAATATCTTTGTGTGTTCTGTATGTAAGAAAGAATTTGCCTTCTTATGCAA
TCTGCAGCAGCACCAGCGTGATCTCCACCCAGATGAGGTATGCACACACCACGAGTTTGAAAGT
GGGACCCTGAGGCCCCAGAACTTCACAGACCCCAGCAAGGCCAATGTGGAGCATATGCCAAGTT
TGCCAGAAGAGCCTTTAGAAACTTCTAGAGAGGAGGAGTTAAATGATTCCTCTGAAGAGCTTTA
CACGACCATCAAAATAATGGCTTCTGGAATAAAGACGAAGGATCCAGATGTTCGACTTGGTCTC
AACCAGCACTACCCGAGCTTTAAACCTCCTCCATTTCAGTACCACCATCGAAACCCTATGGGGA
TAGGGGTGACAGCCACCAACTTCACCACCCACAATATTCCACAGACTTTCACTACTGCCATCCG
CTGCACAAAGTGTGGGAAGGGCGTCGACAATATGCCTGAGCTGCATAAGCATATCTTGGCGTGT
GCGTCTGCAAGTGACAAGAAGAGGTACACCCCTAAGAAAAACCCAGTGCCCCTGAAACAAACTG
TGCAGCCCAAAAATGGAGTGGTGGTTCTAGACAACTCTGGGAAAAATGCCTTCAGACGGATGGG
GCAGCCCAAGAGACTGAGCTTCAATGTTGAACTGGGTAAAATGTCTCCAAACAAGCTCAAGCTG
AGTGCGCTGAAGAAGAAAAACCAGCTGGTGCAGAAGGCCATCCTTCAGAAGAACAGAGCCGCGA
AGCAGAAGGCGGACCTGAGGGACACTTCCGAGGCGTCCTCACACATCTGCCCGTACTGTGACAG
GGAGTTCACATACATTGGCAGCCTGAATAAGCATGCCGCCTTCAGCTGTCCTAAAAAACCTCTT
TCTCCTTCCAAAAGAAAAGTTTCCCATTCGTCTAAGAAAGGTGGCCATGCATCATCTTCTAGCA
GTGACAGAAACAGCAGCAGCCACCCCCGGAGGCGGACTGCAGATACCGAGATCAAGATGCAGAG
CACGCAGGCACCCTTGGGCAAGACCAGAGCTCGGAGTACAGGCCCCGCCCAGGCCTCACTGCCC
TCCTCGTCCTTCAGATCCAGACAGAATGTCAAATTTGCAGCTTCAGTGAAATCCAAAAAAGCAA
GCTCTTCATCCTTGAGGAATTCCAGTCCCATAAGAATGGCCAAAATTACTCACGTCGAGGGCAA
AAAACCCAAAGCTGTTGCCAAGAGTCATTCTGCTCAGCTCTCAAGCAAATCCTCCCGAGGCCTG
CATGTCAGAGTGCAGAAGAGCAAAGCTGTCATACAGAGCAAGACTGCCCTGGCCAGTAAGAGGA
GAACAGACCGGTTCATAGTGAAATCTAGAGAGCGCAGCGGGGGCCCAATCACCCGAAGCCTTCA
GCTGGCAGCTGCTGCGGACCTGAGTGAAAGCAGGAGAGAGGACAGCAGTGCCAGGCATGAGCTG
AAGGACTTCAGCTACAGTCTCCGCCTGGCATCTCGATGCGGCTCATCAACAGCCTCTTACATCA
CCAGACAATGCAGAAAGGTCAAGGCCGCCGCAGCAACTCCGTTCCAGGGACCCTTCCTCAAAGA
GTAGGCACTCTGTCTGCTCCTTAACAGCACCTGAAGTGACCTGGAATCAGTGAAGCCAAAGGGA
CCAGCAGTCTGCCCTGCAGAGAGCACTGACCTCTCCCAGTTGTGAGAGTGAGAGAACGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAGAATGTGTGTGTGTGTGCTGGTG
CATGTGTGTGGTCTTCAAGCCAAGGTCCCAGCCTCAGGAGCAGGACCTTCCCATTTCCCGTCAT
CCTCTGGATGATCCTTGGACGTGGCCCAGAACCGTGCTCTGTGGTGCAGCCATCCTGCCCGGGA
GGGGCATCTCCTTCTATGCAATTTTTTTAAAGAGTTCCTTGGCCCTGCTTTGTGCTTCTTGAGC
TGTCCGTTTGCCACCACTGGGACTTGGATCTGGCCCTGAGGGGTGGGGAAGAGGGCCTATCTAA
GGATAACCTTTCAGAGGTCAAGCTCCCCTTCATGCCACCCCTCCCCCCTGCCCTCACCGACCTT
TTCCCCACACTGTCTCTGGGAATCAATAGCAGATAGCATATAGATCCATCAGGGTTGAGCCTGA
ACCTCGGCCCTAGCACTAGGAAATCCCCCTTTTCTCCCTAAGCAACTGGAGCCGCCAGCTTTCA
AGTCATTTCCTCCTTTGAGGTTCTAGAGTCCGAGAGTCTGCTCCGAAGTCTCTCCTGGGAACCC
GGGAGCCCTCGCACCCAGGACGCAGACTCTGTGCCCATTCTTAGACCTGAGGTAGAAGAAGCAG
TGTTTTGGGACGATAGGGTGGAGGCGTGCCTACTTTGTCTCCTCTGGTGGGACCTCCTACATCA
TTGGCATCTGAACCTTGCAAGTTCGCTGCAAAGAGAAGCAAAGGAAAAAAAAAAACAATAAAAA
AGGGAAATAAGTAAAAGGATGTGTTCAAACAACCCCAGGAGGTTTTGAACAGGTGATTTTCAAA
CTGCTTGCCAGGGAAGGGCAGGGCTGACCCCTGCCGTGGTGGGCAGTTGGAGTCTCGGAGAAAC
ATGGACCTTGGTCACTGAGGTTCTGGGGTTTTGTGCCTTTGGGGCGGAGGATGCCTGAGACAAT
TTTGGTACTGTTTCCTCAGCTCCGTTCTAGTCTCTACCTGTCAAAGTGGGAGGACAGAACTTGG
GAGAGTTGTCACACAAGAGAGGGGCTGCCTTTTTTCAGGGCTACTATGGTTGATATTGCAACTC
TGTAAATATGTATGTAGACACTTTTAAAAGCACGTATTTATGGACCCTACTGTAAATGCCCCGT
TTTTAAAGTTTTATAACGTGTTATTTAATTAATCAGTTGACTGGCTGCAGTAAGGGGGACTGAC
TGGTCCAGGAAAAAGGGTCCCTGGAGACCCTCACGTGGGCAGGAAAACACCCATCATTGTCCAG
TGTCACAGTTTTCTGATTCACCCACCCAGCCAAACTCTGGCGTACCCTTTTTTTTACTTCTTCA
ACTGGAATTGTTCCTTCTACACACCCTGCAGTTAATCCTCAGAAGCATGGACTCGTGGCTGTTG
CTAACCCCACTGACACAGTATGTCCTACGGACACACGGACTCCATCCCGGCCCCTCCCAGCAGC
CAGGAAAATGCACGAACCCAAAGCCTTAGCAAGCTGCTTTCAACCAAACTTGGAAAATGTTGCT
GGGCTCTTGGGGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCCC
TCCATCTCTTCCTCTCTTTGCATGTGCAAACTGTGCTGGGTCACCCTTCAACACTTCCCAGATT
GTCAGGAAAACAAAGAGAAAGCTTCGTCAAGCGTGGTGTTTCCTGGTCAGTGGAGGTCTTCCCG
AGCGAGCAGATTTGGGTCCCACTGAAGGAGATTTAGCGTCTGCCATGTGAAGACAGTGAACAAT
AAAAGTGAGGAGCGATTGTGAAA

hide sequence

RefSeq Acc Id:

XM_039110087 ⟹ XP_038966015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	160,708,565 - 160,815,154 (-)	NCBI
mRatBN7.2	5	155,421,066 - 155,531,852 (-)	NCBI

RefSeq Acc Id:

XM_039110090 ⟹ XP_038966018

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	160,708,565 - 160,742,653 (-)	NCBI
mRatBN7.2	5	155,421,066 - 155,459,327 (-)	NCBI

RefSeq Acc Id:

XM_063287820 ⟹ XP_063143890

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	160,726,101 - 160,815,184 (-)	NCBI

RefSeq Acc Id:

XM_063287821 ⟹ XP_063143891

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	160,708,565 - 160,780,912 (-)	NCBI

RefSeq Acc Id:

XM_063287822 ⟹ XP_063143892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	160,704,396 - 160,815,184 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001071116	(Get FASTA)	NCBI Sequence Viewer
	XP_017448915	(Get FASTA)	NCBI Sequence Viewer
	XP_038966015	(Get FASTA)	NCBI Sequence Viewer
	XP_038966018	(Get FASTA)	NCBI Sequence Viewer
	XP_063143890	(Get FASTA)	NCBI Sequence Viewer
	XP_063143891	(Get FASTA)	NCBI Sequence Viewer
	XP_063143892	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA74468	(Get FASTA)	NCBI Sequence Viewer
	EDL81041	(Get FASTA)	NCBI Sequence Viewer
	EDL81042	(Get FASTA)	NCBI Sequence Viewer
	EDL81043	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000046011
	ENSRNOP00000106619
GenBank Protein	Q63755	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001071116 ⟸ NM_001077648

- UniProtKB:

Q63755 (UniProtKB/Swiss-Prot), F1LQ66 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MHQNTESVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKK
RSQVRNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKP
IAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRRGKKKSHENKNKGIRTHPTQLKAS
ELDSTFANMRGSAEGPKEEDERPLASAPEQPAPLPEVGNQDAVPQVAIPLPACEPQPEVDGKQE
VTDCEVNDVEEEELEEEEELEEEEEEELGEDGVEEADMPNESSAKEPEIRCEEKPEDLLEEPQS
MSNEAREDSPDVTPPPHTPRAREEANGDVLETFMFPCQHCERKFATKQGLERHMHIHISTINHA
FKCKYCGKRFGTQINRRRHERRHETGLKRRPSMTLQSSEDPDDGKGENVTSKDESSPPQLGQDC
LILNSEKTSQEVLNSSFVEENGEVKELHPCKYCKKVFGTHTNMRRHQRRVHERHLIPKGVRRKG
GLLEEPQPPAEQAPPSQNVYVPSTEPEEEGETDDVYIMDISSNISENLNYYIDGKIQTNSSTSN
CDVIEMESNSAHLYGIDCLLTPVTVEITQNIKSTQVSVTDDLLKDSPSSTNCESKKRRTASPPV
LPKIKTETESDSTAPSCSLSLPLSISTAEVVSFHKEKGVYLSSKLKQLLQTQDKLTLPAGFSAA
EIPKLGPVCASAPASMLPVTSSRFKRRTSSPPSSPQHSPALRDFGKPNDGKAAWTDTVLTSKKP
KLESRSDSPAWSLSGRDERETGSPPCFDEYKISKEWAASSTFSSVCNQQPLDLSSGVKQKSEGT
GKTPVPWESVLDLSVHKKPCDSEGKEFKENHLAQPAAKKKKPTTCMLQKVLLNEYNGVSLPTET
TPEVTRSPSPCKSPDTQPDPELGPDSSCSVPTAESPPEVVGPSSPPLQTASLSSGQLPPLLTPT
EPSSPPPCPPVLTVATPPPPLLPTVPLSHPSSDASPQQCPSPFSNTTAQSPLPILSPTVSPSPS
PIPPVEPLMSAASPGPPTLSSSSSSSSSFPSSSCSSTSPSPPPLSAVSSVVSSGDNLEASLPAV
TFKQEESESEGLKPKEEAPPAGGQSVVQETFSKNFICNVCESPFLSIKDLTKHLSVHAEEWPFK
CEFCVQLFKVKTDLSEHRFLLHGVGNIFVCSVCKKEFAFLCNLQQHQRDLHPDEVCTHHEFESG
TLRPQNFTDPSKANVEHMPSLPEEPLETSREEELNDSSEELYTTIKIMASGIKTKDPDVRLGLN
QHYPSFKPPPFQYHHRNPMGIGVTATNFTTHNIPQTFTTAIRCTKCGKGVDNMPELHKHILACA
SASDKKRYTPKKNPVPLKQTVQPKNGVVVLDNSGKNAFRRMGQPKRLSFNVELGKMSPNKLKLS
ALKKKNQLVQKAILQKNRAAKQKADLRDTSEASSHICPYCDREFTYIGSLNKHAAFSCPKKPLS
PSKRKVSHSSKKGGHASSSSSDRNSSCHPRRRTADTEIKMQSTQAPLGKTRARSTGPAQASLPS
SSFRSRQNVKFAASVKSKKASSSSLRNSSPIRMAKITHVEGKKPKAVAKSHSAQLSSKSSRGLH
VRVQKSKAVIQSKTALASKRRTDRFIVKSRERSGGPITRSLQLAAAADLSESRREDSSARHELK
DFSYSLRLASRCGSSTASYITRQCRKVKAAAATPFQGPFLKE

hide sequence

RefSeq Acc Id:	XP_017448915 ⟸ XM_017593426
- Peptide Label:	isoform X1
- UniProtKB:	Q63755 (UniProtKB/Swiss-Prot), F1LQ66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHQNTESVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKK RSQVRNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKP IAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRRGKKKSHENKNKGIRTHPTQLKAS ELDSTFANMRGSAEGPKEEDERPLASAPEQPAPLPEVGNQDAVPQVAIPLPACEPQPEVDGKQE VTDCEVNDVEEEELEEEEELEEEEEEELGEDGVEEADMPNESSAKEPEIRCEEKPEDLLEEPQS MSNEAREDSPDVTPPPHTPRAREEANGDVLETFMFPCQHCERKFATKQGLERHMHIHISTINHA FKCKYCGKRFGTQINRRRHERRHETGLKRRPSMTLQSSEDPDDGKGENVTSKDESSPPQLGQDC LILNSEKTSQEVLNSSFVEENGEVKELHPCKYCKKVFGTHTNMRRHQRRVHERHLIPKGVRRKG GLLEEPQPPAEQAPPSQNVYVPSTEPEEEGETDDVYIMDISSNISENLNYYIDGKIQTNSSTSN CDVIEMESNSAHLYGIDCLLTPVTVEITQNIKSTQVSVTDDLLKDSPSSTNCESKKRRTASPPV LPKIKTETESDSTAPSCSLSLPLSISTAEVVSFHKEKGVYLSSKLKQLLQTQDKLTLPAGFSAA EIPKLGPVCASAPASMLPVTSSRFKRRTSSPPSSPQHSPALRDFGKPNDGKAAWTDTVLTSKKP KLESRSDSPAWSLSGRDERETGSPPCFDEYKISKEWAASSTFSSVCNQQPLDLSSGVKQKSEGT GKTPVPWESVLDLSVHKKPCDSEGKEFKENHLAQPAAKKKKPTTCMLQKVLLNEYNGVSLPTET TPEVTRSPSPCKSPDTQPDPELGPDSSCSVPTAESPPEVVGPSSPPLQTASLSSGQLPPLLTPT EPSSPPPCPPVLTVATPPPPLLPTVPLSHPSSDASPQQCPSPFSNTTAQSPLPILSPTVSPSPS PIPPVEPLMSAASPGPPTLSSSSSSSSSFPSSSCSSTSPSPPPLSAVSSVVSSGDNLEASLPAV TFKQEESESEGLKPKEEAPPAGGQSVVQETFSKNFICNVCESPFLSIKDLTKHLSVHAEEWPFK CEFCVQLFKVKTDLSEHRFLLHGVGNIFVCSVCKKEFAFLCNLQQHQRDLHPDEVCTHHEFESG TLRPQNFTDPSKANVEHMPSLPEEPLETSREEELNDSSEELYTTIKIMASGIKTKDPDVRLGLN QHYPSFKPPPFQYHHRNPMGIGVTATNFTTHNIPQTFTTAIRCTKCGKGVDNMPELHKHILACA SASDKKRYTPKKNPVPLKQTVQPKNGVVVLDNSGKNAFRRMGQPKRLSFNVELGKMSPNKLKLS ALKKKNQLVQKAILQKNRAAKQKADLRDTSEASSHICPYCDREFTYIGSLNKHAAFSCPKKPLS PSKRKVSHSSKKGGHASSSSSDRNSSSHPRRRTADTEIKMQSTQAPLGKTRARSTGPAQASLPS SSFRSRQNVKFAASVKSKKASSSSLRNSSPIRMAKITHVEGKKPKAVAKSHSAQLSSKSSRGLH VRVQKSKAVIQSKTALASKRRTDRFIVKSRERSGGPITRSLQLAAAADLSESRREDSSARHELK DFSYSLRLASRCGSSTASYITRQCRKVKAAAATPFQGPFLKE hide sequence

Ensembl Acc Id:

ENSRNOP00000046011 ⟸ ENSRNOT00000041175

Ensembl Acc Id:

ENSRNOP00000072686 ⟸ ENSRNOT00000078237

RefSeq Acc Id:	XP_038966015 ⟸ XM_039110087
- Peptide Label:	isoform X1
- UniProtKB:	Q63755 (UniProtKB/Swiss-Prot), F1LQ66 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966018 ⟸ XM_039110090
- Peptide Label:	isoform X4
- UniProtKB:	Q63755 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063143892 ⟸ XM_063287822
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063143891 ⟸ XM_063287821
- Peptide Label:	isoform X3
- UniProtKB:	Q63755 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063143890 ⟸ XM_063287820
- Peptide Label:	isoform X2
- UniProtKB:	Q63755 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000111833 ⟸ ENSRNOT00000168952

Ensembl Acc Id:

ENSRNOP00000106619 ⟸ ENSRNOT00000124287

Protein Domains

C2H2-type SET

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63755-F1-model_v2	AlphaFold	Q63755	1-1706	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694240

Promoter ID:

EPDNEW_R4765

Type:

multiple initiation site

Name:

Prdm2_1

Description:

PR/SET domain 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	161,879,146 - 161,879,206	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1594531	AgrOrtholog
BioCyc Gene	G2FUF-39304	BioCyc
Ensembl Genes	ENSRNOG00000033522	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000041175	ENTREZGENE
	ENSRNOT00000124287	ENTREZGENE
Gene3D-CATH	2.170.270.10	UniProtKB/Swiss-Prot
	Classic Zinc Finger	UniProtKB/Swiss-Prot
InterPro	PRDM2_PR-SET	UniProtKB/Swiss-Prot
	RIZ_retinblastoma-bd_prot	UniProtKB/Swiss-Prot
	SET_dom	UniProtKB/Swiss-Prot
	SET_dom_sf	UniProtKB/Swiss-Prot
	Zinc_finger	UniProtKB/Swiss-Prot
	Znf_C2H2_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_type	UniProtKB/Swiss-Prot
KEGG Report	rno:313678	UniProtKB/Swiss-Prot
NCBI Gene	313678	ENTREZGENE
PANTHER	PR DOMAIN ZINC FINGER PROTEIN	UniProtKB/Swiss-Prot
	PR DOMAIN ZINC FINGER PROTEIN 2	UniProtKB/Swiss-Prot
Pfam	PRDM2_PR	UniProtKB/Swiss-Prot
	zf-C2H2	UniProtKB/Swiss-Prot
	zf-C2H2_6	UniProtKB/Swiss-Prot
PharmGKB	PRDM2	RGD
PhenoGen	Prdm2	PhenoGen
PIRSF	RIZ_SET	UniProtKB/Swiss-Prot
PROSITE	SET	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000033522	RatGTEx
SMART	SET	UniProtKB/Swiss-Prot
	ZnF_C2H2	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF57667	UniProtKB/Swiss-Prot
	SSF82199	UniProtKB/Swiss-Prot
UniProt	A0ABK0LPU3_RAT	UniProtKB/TrEMBL
	A0ABK0M1K4_RAT	UniProtKB/TrEMBL
	A6ITZ0_RAT	UniProtKB/TrEMBL
	A6ITZ1_RAT	UniProtKB/TrEMBL
	A6ITZ2_RAT	UniProtKB/TrEMBL
	F1LQ66	ENTREZGENE, UniProtKB/TrEMBL
	PRDM2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-27	Prdm2	PR/SET domain 2	Prdm2	PR domain 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-03	Prdm2	PR domain 2	Prdm2	PR domain containing 2, with ZNF domain	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2007-04-13		PR domain containing 2, with ZNF domain	Prdm2	PR domain containing 2, with ZNF domain (mapped)	Name updated	737654	APPROVED
2007-04-12	Prdm2	PR domain containing 2, with ZNF domain (mapped)	Prdm2_mapped	PR domain containing 2, with ZNF domain (mapped)	Data merged from RGD:3386	737654	APPROVED
2006-11-20	Prdm2	PR domain containing 2, with ZNF domain (mapped)			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-11-17	Prdm2_mapped	PR domain containing 2, with ZNF domain (mapped)	Prdm2	PR domain containing 2, with ZNF domain	Symbol and Name updated	1556543	APPROVED
2001-11-30	Prdm2	PR domain containing 2, with ZNF domain			Symbol and Name updated to reflect Human and Mouse nomenclature	68913	APPROVED
2001-11-30	Riz	Retinoblastoma interacting zinc finger protein			Symbol and Name withdrawn	68913	WITHDRAWN

RGD Curation Notes

Note Type	Note	Reference
gene_product	member of the PR domain family, a subset of Krüppel-like zinc finger genes	1300403

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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