Emid1 (EMI domain containing 1) - Rat Genome Database

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Gene: Emid1 (EMI domain containing 1) Rattus norvegicus
Analyze
Symbol: Emid1
Name: EMI domain containing 1
RGD ID: 1593795
Description: Predicted to be an extracellular matrix structural constituent conferring tensile strength. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of collagen type V trimer. Predicted to be active in extracellular matrix. Orthologous to human EMID1 (EMI domain containing 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EMI domain-containing protein 1; LOC498403; LOC680555; LOC685462; RGD1565846; similar to EMI domain containing 1; similar to putative emu1 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,214,530 - 84,257,628 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1484,214,530 - 84,257,579 (-)EnsemblGRCr8
mRatBN7.21480,000,486 - 80,043,561 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,000,486 - 80,043,620 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1484,402,649 - 84,445,621 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,642,731 - 85,685,706 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,092,074 - 82,135,050 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,357,221 - 85,400,396 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,357,222 - 85,398,532 (-)Ensemblrn6Rnor6.0
Rnor_5.01486,034,839 - 86,073,361 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41485,765,394 - 85,801,932 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1478,890,803 - 78,929,577 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12221002  


Genomics

Comparative Map Data
Emid1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,214,530 - 84,257,628 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1484,214,530 - 84,257,579 (-)EnsemblGRCr8
mRatBN7.21480,000,486 - 80,043,561 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,000,486 - 80,043,620 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1484,402,649 - 84,445,621 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,642,731 - 85,685,706 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,092,074 - 82,135,050 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,357,221 - 85,400,396 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,357,222 - 85,398,532 (-)Ensemblrn6Rnor6.0
Rnor_5.01486,034,839 - 86,073,361 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41485,765,394 - 85,801,932 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1478,890,803 - 78,929,577 (-)NCBICelera
Cytogenetic Map14q21NCBI
EMID1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,205,896 - 29,259,597 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,205,809 - 29,259,598 (+)Ensemblhg38GRCh38
GRCh372229,601,885 - 29,655,586 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362227,931,953 - 27,985,586 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342227,926,506 - 27,980,140NCBI
Celera2213,401,847 - 13,455,450 (+)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2212,566,025 - 12,619,928 (+)NCBIHuRef
CHM1_12229,561,041 - 29,614,884 (+)NCBICHM1_1
T2T-CHM13v2.02229,669,406 - 29,723,089 (+)NCBIT2T-CHM13v2.0
Emid1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,056,265 - 5,102,322 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,056,265 - 5,102,257 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38115,106,265 - 5,152,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,106,265 - 5,152,257 (-)Ensemblmm10GRCm38
MGSCv37115,006,269 - 5,052,225 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36115,006,269 - 5,052,225 (-)NCBIMGSCv36mm8
Celera115,603,362 - 5,649,474 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.26NCBI
Emid1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554553,514,397 - 3,563,904 (+)Ensembl
ChiLan1.0NW_0049554553,514,350 - 3,564,584 (+)NCBIChiLan1.0ChiLan1.0
EMID1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,190,300 - 39,243,335 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12241,889,897 - 41,943,846 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,261,598 - 10,315,182 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12228,070,033 - 28,122,839 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2228,070,033 - 28,122,186 (+)EnsemblpanPan2panpan1.1
EMID1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,520,921 - 22,572,250 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,520,915 - 22,572,262 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2622,392,869 - 22,444,255 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02622,895,451 - 22,946,251 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2622,895,456 - 22,982,513 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12622,604,557 - 22,655,247 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02622,868,455 - 22,919,385 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02622,932,280 - 22,983,599 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Emid1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,580,327 - 112,615,112 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366573,256,048 - 3,290,390 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366573,203,881 - 3,289,871 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMID1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,358,008 - 46,402,076 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11446,358,013 - 46,402,078 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,309,300 - 49,366,917 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EMID1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11912,064,411 - 12,130,238 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1912,077,654 - 12,129,572 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045114,019,983 - 114,073,015 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Emid1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247475,594,714 - 5,640,736 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247475,594,633 - 5,641,419 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Emid1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11174,081,633 - 74,127,189 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Emid1
575 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:77
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000057361
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1484164970100078267Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat

Markers in Region
AW122071  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,000,714 - 80,000,870 (+)MAPPERmRatBN7.2
Rnor_6.01485,357,450 - 85,357,605NCBIRnor6.0
Rnor_5.01486,035,068 - 86,035,223UniSTSRnor5.0
RGSC_v3.41485,765,622 - 85,765,777UniSTSRGSC3.4
Celera1478,891,031 - 78,891,186UniSTS
Cytogenetic Map14q21UniSTS
RH129907  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,000,486 - 80,000,668 (+)MAPPERmRatBN7.2
Rnor_6.01485,357,222 - 85,357,403NCBIRnor6.0
Rnor_5.01486,034,840 - 86,035,021UniSTSRnor5.0
RGSC_v3.41485,765,394 - 85,765,575UniSTSRGSC3.4
Celera1478,890,803 - 78,890,984UniSTS
RH 3.4 Map14565.6UniSTS
Cytogenetic Map14q21UniSTS
RH137079  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2660,008,927 - 60,009,091 (+)MAPPERmRatBN7.2
mRatBN7.21480,000,061 - 80,000,225 (-)MAPPERmRatBN7.2
mRatBN7.2660,008,927 - 60,009,091 (-)MAPPERmRatBN7.2
mRatBN7.21480,000,061 - 80,000,225 (+)MAPPERmRatBN7.2
Rnor_6.0662,923,026 - 62,923,189NCBIRnor6.0
Rnor_6.01485,356,797 - 85,356,960NCBIRnor6.0
Rnor_5.01486,034,415 - 86,034,578UniSTSRnor5.0
Rnor_5.0672,511,874 - 72,512,037UniSTSRnor5.0
RGSC_v3.4662,217,609 - 62,217,772UniSTSRGSC3.4
RGSC_v3.41485,764,969 - 85,765,132UniSTSRGSC3.4
Celera1478,890,378 - 78,890,541UniSTS
Celera659,018,734 - 59,018,897UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 150 91 90 59 92 59 6 356 192 11 129 81 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000057361   ⟹   ENSRNOP00000054173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,216,895 - 84,257,579 (-)Ensembl
mRatBN7.2 Ensembl1480,000,487 - 80,041,669 (-)Ensembl
Rnor_6.0 Ensembl1485,357,222 - 85,398,532 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098869   ⟹   ENSRNOP00000082254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,214,530 - 84,257,579 (-)Ensembl
mRatBN7.2 Ensembl1480,000,486 - 80,043,620 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105384   ⟹   ENSRNOP00000086266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,214,530 - 84,257,579 (-)Ensembl
mRatBN7.2 Ensembl1480,000,486 - 80,043,620 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105678   ⟹   ENSRNOP00000087090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,214,530 - 84,257,579 (-)Ensembl
mRatBN7.2 Ensembl1480,000,487 - 80,043,620 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000150844   ⟹   ENSRNOP00000101401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1484,216,858 - 84,257,579 (-)Ensembl
RefSeq Acc Id: NM_001401620   ⟹   NP_001388549
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,214,530 - 84,257,579 (-)NCBI
mRatBN7.21480,000,486 - 80,043,513 (-)NCBI
RefSeq Acc Id: NM_001401621   ⟹   NP_001388550
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,214,530 - 84,257,579 (-)NCBI
mRatBN7.21480,000,486 - 80,043,513 (-)NCBI
RefSeq Acc Id: NM_001401622   ⟹   NP_001388551
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,214,530 - 84,257,579 (-)NCBI
mRatBN7.21480,000,486 - 80,043,513 (-)NCBI
RefSeq Acc Id: XM_008770369   ⟹   XP_008768591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,214,530 - 84,257,628 (-)NCBI
mRatBN7.21480,001,052 - 80,043,561 (-)NCBI
Rnor_6.01485,357,834 - 85,400,389 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092451   ⟹   XP_038948379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,214,530 - 84,257,628 (-)NCBI
mRatBN7.21480,001,052 - 80,043,561 (-)NCBI
RefSeq Acc Id: XM_039092452   ⟹   XP_038948380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,215,138 - 84,257,628 (-)NCBI
mRatBN7.21480,001,094 - 80,043,561 (-)NCBI
RefSeq Acc Id: XR_005493010
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,215,255 - 84,257,628 (-)NCBI
mRatBN7.21480,001,202 - 80,043,561 (-)NCBI
RefSeq Acc Id: XR_005493011
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,215,223 - 84,257,628 (-)NCBI
mRatBN7.21480,001,174 - 80,043,561 (-)NCBI
RefSeq Acc Id: XR_005493012
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,215,249 - 84,257,628 (-)NCBI
mRatBN7.21480,001,203 - 80,043,561 (-)NCBI
RefSeq Acc Id: XP_008768591   ⟸   XM_008770369
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000054173   ⟸   ENSRNOT00000057361
RefSeq Acc Id: XP_038948379   ⟸   XM_039092451
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038948380   ⟸   XM_039092452
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000086266   ⟸   ENSRNOT00000105384
Ensembl Acc Id: ENSRNOP00000082254   ⟸   ENSRNOT00000098869
Ensembl Acc Id: ENSRNOP00000087090   ⟸   ENSRNOT00000105678
RefSeq Acc Id: NP_001388549   ⟸   NM_001401620
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A8I5ZXK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388550   ⟸   NM_001401621
- Peptide Label: isoform 2 precursor
- UniProtKB: A0A8I6GER7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388551   ⟸   NM_001401622
- Peptide Label: isoform 3 precursor
- UniProtKB: A0A8I6A757 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101401   ⟸   ENSRNOT00000150844
Protein Domains
EMI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A468-F1-model_v2 AlphaFold D4A468 1-223 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593795 AgrOrtholog
BioCyc Gene G2FUF-15147 BioCyc
Ensembl Genes ENSRNOG00000033575 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057361 ENTREZGENE
  ENSRNOT00000057361.4 UniProtKB/TrEMBL
  ENSRNOT00000098869 ENTREZGENE
  ENSRNOT00000098869.2 UniProtKB/TrEMBL
  ENSRNOT00000105384 ENTREZGENE
  ENSRNOT00000105384.2 UniProtKB/TrEMBL
  ENSRNOT00000105678 ENTREZGENE
  ENSRNOT00000105678.2 UniProtKB/TrEMBL
  ENSRNOT00000150844 ENTREZGENE
  ENSRNOT00000150844.1 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  Collagen/C1q_domain UniProtKB/TrEMBL
  EMI_domain UniProtKB/TrEMBL
NCBI Gene 685462 ENTREZGENE
PANTHER EMI DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  EMI DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  EMI UniProtKB/TrEMBL
PhenoGen Emid1 PhenoGen
PROSITE EMI UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033575 RatGTEx
UniProt A0A8I5ZXK2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A757 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GER7 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LMC3_RAT UniProtKB/TrEMBL
  D4A468_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Emid1  EMI domain containing 1  LOC680555  similar to EMI domain containing 1  Data merged from RGD:1590605 737654 PROVISIONAL
2008-03-05 Emid1  EMI domain containing 1  LOC685462  similar to EMI domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685462  similar to EMI domain containing 1  RGD1565846_predicted  similar to putative emu1 protein (predicted)  Data merged from RGD:1565846 1643240 APPROVED
2006-11-20 LOC685462  similar to EMI domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC680555  similar to EMI domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1565846_predicted  similar to putative emu1 protein (predicted)  LOC498403  similar to putative emu1 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498403  similar to putative emu1 protein      Symbol and Name status set to provisional 70820 PROVISIONAL