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Gene: Ubr2 (ubiquitin protein ligase E3 component n-recognin 2) Rattus norvegicus

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Symbol:

Ubr2

Name:

ubiquitin protein ligase E3 component n-recognin 2

RGD ID:

1593237

Description:

Predicted to enable L-leucine binding activity and histone H2A ubiquitin ligase activity. Predicted to be involved in several processes, including meiotic nuclear division; negative regulation of gene expression; and regulation of signal transduction. Predicted to act upstream of or within several processes, including T cell receptor signaling pathway; male meiosis I; and ubiquitin-dependent protein catabolic process. Predicted to be located in chromatin. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human UBR2 (ubiquitin protein ligase E3 component n-recognin 2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

E3 ubiquitin-protein ligase UBR2; LOC363188; similar to ubiquitin protein ligase E3 component n-recognin 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UBR2 (ubiquitin protein ligase E3 component n-recognin 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Ubr2 (ubiquitin protein ligase E3 component n-recognin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ubr2 (ubiquitin protein ligase E3 component n-recognin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UBR2 (ubiquitin protein ligase E3 component n-recognin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UBR2 (ubiquitin protein ligase E3 component n-recognin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ubr2 (ubiquitin protein ligase E3 component n-recognin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UBR2 (ubiquitin protein ligase E3 component n-recognin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UBR2 (ubiquitin protein ligase E3 component n-recognin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ubr2 (ubiquitin protein ligase E3 component n-recognin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ubr2 (ubiquitin protein ligase E3 component n-recognin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	UBR2 (ubiquitin protein ligase E3 component n-recognin 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	UBR2 (ubiquitin protein ligase E3 component n-recognin 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ubr2 (ubiquitin protein ligase E3 component n-recognin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ubr2 (ubiquitin protein ligase E3 component n-recognin 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ubr2 (ubiquitin protein ligase E3 component n-recognin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ubr2 (ubiquitin protein ligase E3 component n-recognin 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UBR2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	UBR2	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Ubr1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ubr1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UBR1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UBR1	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ubr-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ubr-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ubr2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ubr2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	21,480,058 - 21,559,936 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	21,480,037 - 21,559,936 (+)	Ensembl				GRCr8
mRatBN7.2	9	13,982,427 - 14,062,315 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	13,982,329 - 14,062,139 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	22,564,690 - 22,642,065 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	27,628,725 - 27,706,075 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	25,928,057 - 26,005,432 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	16,003,058 - 16,080,152 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	16,003,058 - 16,080,152 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	14,919,790 - 14,997,035 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	9,165,363 - 9,247,261 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	11,731,361 - 11,809,500 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

1H-pyrazole (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Bisphenol A diglycidyl ether (ISO)

bisphenol AF (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chlorpyrifos (ISO)

choline (ISO)

clofibrate (ISO)

cobalt dichloride (EXP,ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

decabromodiphenyl ether (EXP)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

endosulfan (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

fenofibrate (ISO)

folic acid (ISO)

glafenine (EXP)

isoprenaline (ISO)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methamphetamine (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

pentane-2,3-dione (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phlorizin (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

propiconazole (ISO)

resveratrol (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

tungsten (ISO)

vinclozolin (EXP)

vincristine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to L-leucine (IEA,ISO)

heterochromatin formation (IEA,ISO)

male meiosis I (ISO)

male meiotic nuclear division (IEA,ISO)

negative regulation of TOR signaling (IEA,ISO)

positive regulation of T cell receptor signaling pathway (IEA,ISO)

proteasome-mediated ubiquitin-dependent protein catabolic process (IEA,ISO)

protein catabolic process (IEA)

protein K63-linked ubiquitination (IEA,ISO)

protein ubiquitination (IBA,IEA)

reciprocal meiotic recombination (IEA,ISO)

spermatogenesis (ISO)

transposable element silencing (IEA,ISO)

ubiquitin-dependent protein catabolic process (ISO)

ubiquitin-dependent protein catabolic process via the N-end rule pathway (IBA,IEA,ISO)

Cellular Component

chromatin (IEA,ISO)

chromosome (IEA)

cytoplasm (IBA)

nucleus (IEA)

ubiquitin ligase complex (IBA,IEA,ISO)

Molecular Function

histone H2A ubiquitin ligase activity (IEA,ISO)

L-leucine binding (IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IBA,IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11689692	PMID:12477932	PMID:14585983	PMID:19028597	PMID:20080676	PMID:20298436	PMID:28708824	PMID:28806172

Genomics

Comparative Map Data

Ubr2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	21,480,058 - 21,559,936 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	21,480,037 - 21,559,936 (+)	Ensembl				GRCr8
mRatBN7.2	9	13,982,427 - 14,062,315 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	13,982,329 - 14,062,139 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	22,564,690 - 22,642,065 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	27,628,725 - 27,706,075 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	25,928,057 - 26,005,432 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	16,003,058 - 16,080,152 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	16,003,058 - 16,080,152 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	14,919,790 - 14,997,035 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	9,165,363 - 9,247,261 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	11,731,361 - 11,809,500 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

UBR2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	42,564,029 - 42,693,505 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	42,563,995 - 42,693,505 (+)	Ensembl			hg38	GRCh38
GRCh37	6	42,531,767 - 42,661,243 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	42,640,036 - 42,766,889 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	6	44,084,013 - 44,213,528 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	42,250,154 - 42,379,642 (+)	NCBI		HuRef
CHM1_1	6	42,534,602 - 42,663,798 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	42,392,486 - 42,521,935 (+)	NCBI		T2T-CHM13v2.0

Ubr2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	47,239,217 - 47,321,812 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	47,239,221 - 47,321,482 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	46,928,291 - 47,010,886 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	46,928,295 - 47,010,556 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	47,065,240 - 47,147,481 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	46,391,482 - 46,473,684 (-)	NCBI		MGSCv36	mm8
Celera	17	50,364,557 - 50,446,007 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	22.91	NCBI

Ubr2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	8,677,801 - 8,782,120 (+)	Ensembl
ChiLan1.0	NW_004955437	8,678,212 - 8,780,700 (+)	NCBI	ChiLan1.0	ChiLan1.0

UBR2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	57,058,201 - 57,190,366 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	52,928,203 - 53,058,177 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	42,150,409 - 42,282,486 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	43,449,154 - 43,579,224 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	43,449,154 - 43,579,224 (+)	Ensembl			panPan2	panpan1.1

UBR2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	11,167,286 - 11,296,817 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	11,167,346 - 11,294,911 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	11,194,238 - 11,324,038 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	11,648,206 - 11,778,081 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	11,648,320 - 11,778,079 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	11,176,544 - 11,306,317 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	11,261,325 - 11,391,207 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	11,354,858 - 11,484,875 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ubr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	46,637,679 - 46,781,221 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	17,181,214 - 17,322,163 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	17,178,981 - 17,322,600 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBR2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	37,655,926 - 37,784,359 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	37,655,808 - 37,785,301 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	43,111,597 - 43,215,426 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBR2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	29,458,388 - 29,590,706 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	29,458,374 - 29,590,687 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	42,587,479 - 42,725,323 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ubr2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	16,701,331 - 16,798,897 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	16,701,950 - 16,798,293 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ubr2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	82,866,601 - 82,945,676 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ubr2
809 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	24
Count of miRNA genes:	24
Interacting mature miRNAs:	24
Transcripts:	ENSRNOT00000021158
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
10054141	Gmadr4	Adrenal mass QTL 4	2.45	0.0074	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	9	1	21707400	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	1	31250552	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	496645	45496645	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	41763315	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	6714888	29567695	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	496645	45496645	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	496645	45496645	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat

Markers in Region

D9Rat40

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,013,840 - 14,013,932 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,034,318 - 16,034,409	NCBI	Rnor6.0
Rnor_5.0	9	14,950,723 - 14,950,814	UniSTS	Rnor5.0
RGSC_v3.4	9	9,196,789 - 9,196,880	UniSTS	RGSC3.4
RGSC_v3.4	9	9,196,788 - 9,196,880	RGD	RGSC3.4
Celera	9	11,763,068 - 11,763,159	UniSTS
RGSC_v3.1	9	9,194,111 - 9,194,202	RGD
RH 3.4 Map	9	53.1	RGD
RH 3.4 Map	9	53.1	UniSTS
RH 2.0 Map	9	55.5	RGD
SHRSP x BN Map	9	11.8399	RGD
FHH x ACI Map	9	6.94	RGD
Cytogenetic Map	9	q12	UniSTS

RH127717

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,062,015 - 14,062,200 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,081,800 - 16,081,984	NCBI	Rnor6.0
Rnor_5.0	9	14,998,683 - 14,998,867	UniSTS	Rnor5.0
RGSC_v3.4	9	9,246,962 - 9,247,146	UniSTS	RGSC3.4
Celera	9	11,811,148 - 11,811,332	UniSTS
RH 3.4 Map	9	60.3	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH128056

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,032,170 - 14,032,384 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,052,646 - 16,052,859	NCBI	Rnor6.0
Rnor_5.0	9	14,969,051 - 14,969,264	UniSTS	Rnor5.0
RGSC_v3.4	9	9,215,117 - 9,215,330	UniSTS	RGSC3.4
Celera	9	11,781,396 - 11,781,609	UniSTS
RH 3.4 Map	9	55.7	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH143201

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,060,552 - 14,060,693 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,080,337 - 16,080,477	NCBI	Rnor6.0
Rnor_5.0	9	14,997,220 - 14,997,360	UniSTS	Rnor5.0
RGSC_v3.4	9	9,245,499 - 9,245,639	UniSTS	RGSC3.4
Celera	9	11,809,685 - 11,809,825	UniSTS
RH 3.4 Map	9	59.4	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH138826

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,060,552 - 14,060,768 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,080,337 - 16,080,552	NCBI	Rnor6.0
Rnor_5.0	9	14,997,220 - 14,997,435	UniSTS	Rnor5.0
RGSC_v3.4	9	9,245,499 - 9,245,714	UniSTS	RGSC3.4
Celera	9	11,809,685 - 11,809,900	UniSTS
RH 3.4 Map	9	55.0	UniSTS
Cytogenetic Map	9	q12	UniSTS

BF390989

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,019,516 - 14,019,722 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,039,994 - 16,040,199	NCBI	Rnor6.0
Rnor_5.0	9	14,956,399 - 14,956,604	UniSTS	Rnor5.0
RGSC_v3.4	9	9,202,465 - 9,202,670	UniSTS	RGSC3.4
Celera	9	11,768,744 - 11,768,949	UniSTS
RH 3.4 Map	9	57.3	UniSTS
Cytogenetic Map	9	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001178071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001412818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB549212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC107934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021158 ⟹ ENSRNOP00000021158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	21,480,117 - 21,556,543 (+)	Ensembl
mRatBN7.2 Ensembl	9	13,982,329 - 14,058,922 (+)	Ensembl
Rnor_6.0 Ensembl	9	16,003,058 - 16,080,152 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081621 ⟹ ENSRNOP00000071986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	21,480,117 - 21,556,543 (+)	Ensembl
mRatBN7.2 Ensembl	9	13,982,329 - 14,058,922 (+)	Ensembl
Rnor_6.0 Ensembl	9	16,003,058 - 16,072,988 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094973 ⟹ ENSRNOP00000078618

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	21,480,117 - 21,559,936 (+)	Ensembl
mRatBN7.2 Ensembl	9	13,982,684 - 14,060,495 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100833 ⟹ ENSRNOP00000077068

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	13,982,684 - 14,060,495 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111742 ⟹ ENSRNOP00000076741

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	21,480,037 - 21,559,935 (+)	Ensembl
mRatBN7.2 Ensembl	9	13,982,329 - 14,062,139 (+)	Ensembl

RefSeq Acc Id:

NM_001178071 ⟹ NP_001171542

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,480,117 - 21,559,936 (+)	NCBI
mRatBN7.2	9	13,982,491 - 14,062,315 (+)	NCBI
Rnor_6.0	9	16,003,058 - 16,080,152 (+)	NCBI
Rnor_5.0	9	14,919,790 - 14,997,035 (+)	NCBI
Celera	9	11,731,361 - 11,809,500 (+)	NCBI

Sequence:

show sequence

ATGGCGTCGGAGATGGAGCCCGAGGTGCAGGCCATCGACCGCAGTTTGCTGGAATGTTCTGCCG
AGGAGATCGCAGGGAAATGGCTGCAAGCAACCGACCTCACCAGAGAAGTATACCAGCATTTAGC
CCATTGTGTGCCCAAAATCTACTGCCAGGGCCCCAACCCTTTCCCTCAGAAGGAAGACACACTG
GCACAGCACATCTTGCTGGGACCAATGGAGTGGTATATCTGCGGCGAAGACCCTGCGCTGGGGT
TTCCAAAGCTGGAGCAGGCGAACAAGCCTTCTCACCTCTGTGGCCGAGTGTTTAAAGTAGGGGA
ACCTACCTACTCCTGCAGAGACTGTGCAGTCGACCCCACCTGCGTTTTATGCATGCAGTGCTTC
TTGGGAAGTATCCACAGAGACCATCGATACAGGATGACCACATCAGGAGGTGGCGGCTTCTGTG
ACTGTGGTGACACTGAAGCGTGGAAAGAGGGTCCTTACTGCCAAAGACACGAGCTTAGCAGTTC
AGAAGTTGTGGAGGAGGAGGATCCTCTTGTGCATCTGTCAGAAGACGTGATAGCAAGAACGTAC
AACATTTTTGCTATTATGTTTCGATACGCAGTAGATATGCTGACCTGGGAAAAAGAAAGTGAAT
TGCCGGAAGACTTAGAGGTGGGAGAGAAGACTGACACCTACTACTGCATGCTGTTTAACGATGA
GGTTCACACCTATGAGCAAGTCATTTATACTCTTCAGAAAGCTGTGAACTGTACTCAGAAAGAA
GCCATTGGCTTTGCAACTACAGTCGATCGAGATGGGCGTAGGTCTGTCCGGTATGGAGATTTCC
AGTACTGTGATCAAGCAAAGACAGTCATTGTGAGGAACACCAGCAGGCAGACCAAGCCGCTCAA
AGTTCAGGTTATGCACTCCTCCGTGGCCGCTCATCAGAATTTTGGTTTGAAAGCTCTGTCTTGG
CTGGGAAGTGTTATTGGATACTCAGATGGCCTTCGCCGGATTTTGTGTCAAGTTGGATTACAAG
AAGGTCCAGATGGTGAAAACTCTTCTCTGGTCGACAGACTGATGCTTAATGATTCCAAATTATG
GAAAGGCGCTCGGAGTGTGTACCACCAGCTGTTCATGAGCAGCCTGCTCATGGATCTCAAGTAT
AAGAAGCTGTTTGCTGTTCGCTTTGCAAAAAACTATGAGCGTTTGCAGAGAGATTATGTGACAG
ATGACCACGACAGAGAGTTTTCAGTCGCAGACCTCTCGGTTCAGATATTCACAGTCCCTTCGCT
TGCTCGAATGCTCATCACAGAAGAGAACCTGATGACTGTTATCATTAAGGCCTTCATGGATCAT
TTGAAACACAGAGATGCCCAAGGCAGATTCCAATTTGAACGTTACACTGCCCTCCAAGCCTTCA
AGTTCAGGAGAGTTCAGAGCCTTATCTTAGATCTCAAGTATGTGTTGATCAGCAAACCAACGGA
GTGGTCAGATGAGCTGAGGCAGAAGTTCTTGCAAGGCTTCGATGCCTTCTTGGAATTACTGAAG
TGCATGCAGGGAATGGATCCAATCACACGGCAGGTAGGACAGCACATTGAAATGGAGCCAGAGT
GGGAGGCGGCCTTCACGCTGCAAATGAAACTGACGCACGTGATTTCCATGGTGCAGGATTGGTG
TGCTTTGGACGAAAAAGTGTTAATTGAAGCTTACAAGAAATGCCTGGCTGTGCTGATGCAGTGT
CATGGGGGATTTACTGATGGGGAACAGCCAATCACACTCAGTATTTGTGGACACTCGGTGGAAA
CGATCAGATACTGTGTTTCCCAAGAAAAAGTTAGCATTCACCTCCCAATTTCTCGCTTGCTTGC
AGGTTTGCATGTGTTATTAAGCAAAAGTGAAGTGGCATATAAATTCCCCGAGCTCCTACCTCTA
AGTGAACTGAGCCCACCCATGTTGATAGAGCATCCTCTTAGATGTCTTGTCTTATGTGCCCAAG
TGCATGCTGGGATGTGGAGAAGAAATGGCTTCTCTCTAGTAAACCAGATCTATTACTACCATAA
TGTGAAATGCAGGCGGGAGATGTTCGACAAGGACATAGTGATGCTTCAGACAGGTGTCTCCATG
ATGGATCCAAACCACTTCCTGATGATCATGCTCAGCCGCTTTGAGCTCTATCAGATCTTCAGCA
CGCCTGACTACGGCAAGAGATTCAGTTCCGAGGTTACCCATAAGGACGTTGTTCAGCAGAACAA
CACTCTGATAGAAGAGATGCTCTACCTCATCATCATGCTCGTCGGAGAAAGATTCAGCCCTGGG
GTTGGACAGGTGGGCGCCACAGATGAAATCAAGCGGGAGATTATCCATCAGCTGAGCATCAAGC
CCATGGCGCACAGCGAGCTGGTGAAGTCTCTGCCCGAAGACGAGAACAAGGAGACCGGCATGGA
GAGTGTCATCGAGACCGTAGCACATTTCAAGAAACCTGGTCTGACAGGACGAGGCATGTACGAG
CTGAAGCCAGAGTGTGCCAAAGAGTTCAACCTGTATTTTTATCATTTCTCCAGGGCAGAGCAGT
CCAAGGCGGAGGAAGCTCAGCGGAAGTTGAAAAGAGAAAATAAAGAAGATACAGCACTTCCTCC
TCCGGCTTTGCCACCGTTCTGCCCTCTGTTCGGGAGCCTGGTTAACATCTTGCAGTGTGATGTC
ATGCTGTCCATCATGGGAACAATACTGCAGTGGGCTGTAGAGCGCCATGGGTCTGCCTGGTCAG
AGTCTATGCTGCAAAGGGTGCTGCATTTGATTGGGATGGCGCTCCAGGAAGAGAAGCACCACTT
GGAGAATGCTGTGGAAGGGCACGTGCAGACGTTCACCTTCACGCAGAAGATTTCAAAACCTGGC
GATGCACCGAATAACTCCCCAAGCATCCTCGCTATGCTAGAGACCTTGCAGAACGCTCCCTCCC
TGGAGGTCCACAAGGACATGATTAGGTGGTTGCTAAAGATGTTTAATACAATTAAGAAGATAAG
AGAGAGTTCATCCAGCAGCCCTGTGGCAGAGGCAGAAGGAGCCATAATGGAAGAGAGCTCAAGA
GACAAAGACAAAGCAGAGAGAAAAAGGAAAGCGGAGATCGCCAGACTGCGCCGAGAGAAGATCA
TGGCTCAGATGTCCGAGATGCAGAGGCACTTCATTGACGAGAACAAAGAGCTCTTCCAGCAGAC
CATAGAGCTGGACGCCTCTGCCTCTGCCGCTCTCGACAACAGCCCTCTGGTTCCAGACGCGGCT
CTGACAGCATTGGGTCCGGCACAGACACAGGTCCCTGAGCCCAGACAGTTTGTCACCTGTATAC
TGTGTCAGGAGGAGCAGGAGGTCACTGTGGAAAGCAGAGCAATGGTCTTGGCAGCGTTTGTTCA
GAGGTCAACTGTGCTGTCAAAAGACAGATCGAAAGTCATTGAGGACCCAGAAAAATATGACCCA
CTATTCATGCACCCTGATCTGTCCTGTGGAACACACACTGGCAGCTGTGGGCACGCCATGCACG
CCCATTGTTGGCAAAGGTATTTTGATTCCGTTCAAGCTAAGGAGCAGCGAAGGCAGCAGCGACT
GCGCCTGCACACTAGCTACGATGTAGAGAACGGCGAGTTCCTCTGCCCGCTCTGTGAGTGCCTG
AGCAACACCGTGATCCCCCTGCTGCTTCCTCCCAGGAGCATCCTCAGCAGGAGGTTAAATTTTT
CAGACCAACCAGATCTGGCACAGTGGACCAGAACAATAGCCCAGCAGATAAAGGTGATCCAGAT
GCTAAGGAAAGGAGACAGTGCTGCTGACAAGCCCTCTTCAGAGGACACAGAAGACATGAATATA
ATTCCCATCCCAGAAGGCTTCAGGCCTGATTTTTATCCTCGGAACCCATATTCCGATAGCATAA
AGGAGATGCTAACAACGTTTGGAACAGCTACTTACAAGGTGGGACTAAAGGTTCATCCCAATGA
AGATGACCCCCGTGTACCCATCATGTGCTGGGGGACCTGTGCATACACTATCCAGAGCATAGAA
AGAATTCTGAGTGAGGAGGAAAAGCCCGTGTTCGGACCTCTGCCCTGCAGACTGGACGACTGTC
TCAGGTCCTTAACACGCTTTGCAGCAGCACATTGGACAGTGGCGTTACTTCCCGTGGTACAAGG
ACACTTCTGTAAACTCTTTGCATCCTTGGTGCCTAGTGACGGCTCTGAAGACCTCCCGTGCATA
TTAGACATCGACATGTTTCATTTGCTGGTGGGCCTGGTGCTCTCCTTCCCGGCTCTGCAGTGTC
AGGATTTCTCAGGAAGCAGCCTGGCCACGGGAGACCTGCACATCTTCCACCTGGTTACTCTGGC
ACACATCGTACAGATCTTACTTACCTCATGTACAGAAGAGAATGGCATGGATCAAGAGAATCCC
ACTGGGGAAGAAGAACTCGCCATTCTCTCTTTGCACAAAACACTTCACCGGTGTACTGGAAGTG
CCTTGGACGAAGCCCCATCCGGCTGGCACCTGTGGAGGAGCGTGCGGGCTGGCATCCTGCCTTT
CCTCAAGTGCTCTGCTCTGTTCTTCCACTATTTAAATGGAGTCCCGGCCCCACCAGACCTGCAA
GTTTCTGGAGCAAGCCATTTTGAACACTTATGTAACTACCTTTCCCTACCAACCAACCTCATCC
GCCTTTTTCAAGAAAACAGTGACATCATGAACTCTCTGATTGAAAGTTGGTGCCAGAACAGCGA
AGTTAAAAGGTATCTAAACGGCGAGAGAGGAGCGATAAGCTACCCGAGAGGAGCCAACAAACTG
ATAGACCTTCCGGAGGACTACAGCAGCCTCATCAACCAAGCTTCCAATTTCTCGTGCCCCAAAT
CAGGTGGTGACAAGAGCAGAGCCCCTACCCTGTGCCTCGTATGTGGGAGTCTCCTCTGCTCTCA
GAGTTACTGCTGCCAAGCCGAGCTGGAGGGCGAGGATGTCGGGGCCTGCACAGCACACACCTAC
TCCTGCGGCTCTGGGGCCGGCATCTTCCTGAGAGTACGGGAATGTCAGGTGCTATTTTTAGCTG
GCAAAACCAAAGGCTGTTTTTATTCTCCTCCTTACCTTGATGACTACGGGGAGACTGACCAGGG
ACTCAGACGAGGAAATCCTTTACATTTATGCCAAGAGCGGTTTCGAAAGATCCAGAAGCTCTGG
CAGCAGCACAGCATCACCGAGGAGATCGGACACGCGCAGGAGGCCAACCAGACCCTGGTGGGCA
TCGACTGGCAGCATTTGTAA

hide sequence

RefSeq Acc Id:

NM_001412818 ⟹ NP_001399747

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,480,117 - 21,559,936 (+)	NCBI
mRatBN7.2	9	13,982,491 - 14,062,315 (+)	NCBI

RefSeq Acc Id:

XM_039083816 ⟹ XP_038939744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,480,064 - 21,559,936 (+)	NCBI
mRatBN7.2	9	13,982,432 - 14,062,315 (+)	NCBI

RefSeq Acc Id:

XM_039083820 ⟹ XP_038939748

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,480,058 - 21,530,164 (+)	NCBI
mRatBN7.2	9	13,982,427 - 14,032,542 (+)	NCBI

RefSeq Acc Id:

XM_063267355 ⟹ XP_063123425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,480,064 - 21,559,936 (+)	NCBI

RefSeq Acc Id:

XM_063267356 ⟹ XP_063123426

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,520,181 - 21,559,936 (+)	NCBI

RefSeq Acc Id:

XM_063267357 ⟹ XP_063123427

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,480,058 - 21,530,164 (+)	NCBI

RefSeq Acc Id:

XR_010054612

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,480,063 - 21,553,197 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001171542	(Get FASTA)	NCBI Sequence Viewer
	NP_001399747	(Get FASTA)	NCBI Sequence Viewer
	XP_038939744	(Get FASTA)	NCBI Sequence Viewer
	XP_038939748	(Get FASTA)	NCBI Sequence Viewer
	XP_063123425	(Get FASTA)	NCBI Sequence Viewer
	XP_063123426	(Get FASTA)	NCBI Sequence Viewer
	XP_063123427	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI07935	(Get FASTA)	NCBI Sequence Viewer
	BAJ06628	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021158.9
	ENSRNOP00000071986.3
	ENSRNOP00000076741
	ENSRNOP00000076741.1
	ENSRNOP00000078618
	ENSRNOP00000078618.2

RefSeq Acc Id:	NP_001171542 ⟸ NM_001178071
- Peptide Label:	isoform 2
- UniProtKB:	D5MTH0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASEMEPEVQAIDRSLLECSAEEIAGKWLQATDLTREVYQHLAHCVPKIYCQGPNPFPQKEDTL AQHILLGPMEWYICGEDPALGFPKLEQANKPSHLCGRVFKVGEPTYSCRDCAVDPTCVLCMQCF LGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQRHELSSSEVVEEEDPLVHLSEDVIARTY NIFAIMFRYAVDMLTWEKESELPEDLEVGEKTDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKE AIGFATTVDRDGRRSVRYGDFQYCDQAKTVIVRNTSRQTKPLKVQVMHSSVAAHQNFGLKALSW LGSVIGYSDGLRRILCQVGLQEGPDGENSSLVDRLMLNDSKLWKGARSVYHQLFMSSLLMDLKY KKLFAVRFAKNYERLQRDYVTDDHDREFSVADLSVQIFTVPSLARMLITEENLMTVIIKAFMDH LKHRDAQGRFQFERYTALQAFKFRRVQSLILDLKYVLISKPTEWSDELRQKFLQGFDAFLELLK CMQGMDPITRQVGQHIEMEPEWEAAFTLQMKLTHVISMVQDWCALDEKVLIEAYKKCLAVLMQC HGGFTDGEQPITLSICGHSVETIRYCVSQEKVSIHLPISRLLAGLHVLLSKSEVAYKFPELLPL SELSPPMLIEHPLRCLVLCAQVHAGMWRRNGFSLVNQIYYYHNVKCRREMFDKDIVMLQTGVSM MDPNHFLMIMLSRFELYQIFSTPDYGKRFSSEVTHKDVVQQNNTLIEEMLYLIIMLVGERFSPG VGQVGATDEIKREIIHQLSIKPMAHSELVKSLPEDENKETGMESVIETVAHFKKPGLTGRGMYE LKPECAKEFNLYFYHFSRAEQSKAEEAQRKLKRENKEDTALPPPALPPFCPLFGSLVNILQCDV MLSIMGTILQWAVERHGSAWSESMLQRVLHLIGMALQEEKHHLENAVEGHVQTFTFTQKISKPG DAPNNSPSILAMLETLQNAPSLEVHKDMIRWLLKMFNTIKKIRESSSSSPVAEAEGAIMEESSR DKDKAERKRKAEIARLRREKIMAQMSEMQRHFIDENKELFQQTIELDASASAALDNSPLVPDAA LTALGPAQTQVPEPRQFVTCILCQEEQEVTVESRAMVLAAFVQRSTVLSKDRSKVIEDPEKYDP LFMHPDLSCGTHTGSCGHAMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYDVENGEFLCPLCECL SNTVIPLLLPPRSILSRRLNFSDQPDLAQWTRTIAQQIKVIQMLRKGDSAADKPSSEDTEDMNI IPIPEGFRPDFYPRNPYSDSIKEMLTTFGTATYKVGLKVHPNEDDPRVPIMCWGTCAYTIQSIE RILSEEEKPVFGPLPCRLDDCLRSLTRFAAAHWTVALLPVVQGHFCKLFASLVPSDGSEDLPCI LDIDMFHLLVGLVLSFPALQCQDFSGSSLATGDLHIFHLVTLAHIVQILLTSCTEENGMDQENP TGEEELAILSLHKTLHRCTGSALDEAPSGWHLWRSVRAGILPFLKCSALFFHYLNGVPAPPDLQ VSGASHFEHLCNYLSLPTNLIRLFQENSDIMNSLIESWCQNSEVKRYLNGERGAISYPRGANKL IDLPEDYSSLINQASNFSCPKSGGDKSRAPTLCLVCGSLLCSQSYCCQAELEGEDVGACTAHTY SCGSGAGIFLRVRECQVLFLAGKTKGCFYSPPYLDDYGETDQGLRRGNPLHLCQERFRKIQKLW QQHSITEEIGHAQEANQTLVGIDWQHL hide sequence

Ensembl Acc Id:

ENSRNOP00000021158 ⟸ ENSRNOT00000021158

Ensembl Acc Id:

ENSRNOP00000071986 ⟸ ENSRNOT00000081621

RefSeq Acc Id:	XP_038939748 ⟸ XM_039083820
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038939744 ⟸ XM_039083816
- Peptide Label:	isoform X1
- UniProtKB:	D5MTH0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000078618 ⟸ ENSRNOT00000094973

Ensembl Acc Id:

ENSRNOP00000077068 ⟸ ENSRNOT00000100833

Ensembl Acc Id:

ENSRNOP00000076741 ⟸ ENSRNOT00000111742

RefSeq Acc Id:	NP_001399747 ⟸ NM_001412818
- Peptide Label:	isoform 1
- UniProtKB:	A0A8I5YBG5 (UniProtKB/TrEMBL), D5MTH0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123427 ⟸ XM_063267357
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063123425 ⟸ XM_063267355
- Peptide Label:	isoform X2
- UniProtKB:	D5MTH0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123426 ⟸ XM_063267356
- Peptide Label:	isoform X3

Protein Domains

UBR-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9U6-F1-model_v2	AlphaFold	D4A9U6	1-1755	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1593237	AgrOrtholog
BioCyc Gene	G2FUF-28254	BioCyc
Ensembl Genes	ENSRNOG00000015813	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021158.9	UniProtKB/TrEMBL
	ENSRNOT00000081621.3	UniProtKB/TrEMBL
	ENSRNOT00000094973	ENTREZGENE
	ENSRNOT00000094973.2	UniProtKB/TrEMBL
	ENSRNOT00000111742	ENTREZGENE
	ENSRNOT00000111742.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.2670	UniProtKB/TrEMBL
	2.10.110.30	UniProtKB/TrEMBL
	3.30.1390.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7308717	IMAGE-MGC_LOAD
InterPro	ClpS_core	UniProtKB/TrEMBL
	E3_ELL-like	UniProtKB/TrEMBL
	E3_ligase_UBR-like_C	UniProtKB/TrEMBL
	Ribosomal_L7/12_C/ClpS-like	UniProtKB/TrEMBL
	UBR-box_UBR2	UniProtKB/TrEMBL
	UBR1-like	UniProtKB/TrEMBL
	UBR1-like_winged-helix	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
	Znf_N-recognin	UniProtKB/TrEMBL
KEGG Report	rno:363188	UniProtKB/TrEMBL
MGC_CLONE	MGC:125135	IMAGE-MGC_LOAD
NCBI Gene	363188	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE UBR2	UniProtKB/TrEMBL
	PTHR21497	UniProtKB/TrEMBL
Pfam	ClpS	UniProtKB/TrEMBL
	PRT6_C	UniProtKB/TrEMBL
	UBR1-like_wing	UniProtKB/TrEMBL
	zf-UBR	UniProtKB/TrEMBL
PhenoGen	Ubr2	PhenoGen
PROSITE	ZF_UBR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015813	RatGTEx
SMART	ZnF_UBR1	UniProtKB/TrEMBL
Superfamily-SCOP	Ribosomal_L7/12_C/ClpS-like	UniProtKB/TrEMBL
	SSF46785	UniProtKB/TrEMBL
UniProt	A0A0G2K1U4_RAT	UniProtKB/TrEMBL
	A0A8I5YBG5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZL62_RAT	UniProtKB/TrEMBL
	D4A9U6_RAT	UniProtKB/TrEMBL
	D5MTH0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-11-16	Ubr2	ubiquitin protein ligase E3 component n-recognin 2	LOC363188	similar to ubiquitin protein ligase E3 component n-recognin 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC363188	similar to ubiquitin protein ligase E3 component n-recognin 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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