Gene: Spata45 (spermatogenesis associated 45) Rattus norvegicus
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Symbol:
Spata45
Name:
spermatogenesis associated 45
RGD ID:
1593182
Description:
Orthologous to human SPATA45 (spermatogenesis associated 45); INTERACTS WITH 1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ortholog); 2,2',4,4',5,5'-hexachlorobiphenyl (ortholog); 2,2',5,5'-tetrachlorobiphenyl (ortholog).
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
hypothetical LOC498316; hypothetical protein LOC498316; LOC498316; SPATA45l1; spermatogenesis associated 45-like 1; spermatogenesis-associated protein 45; uncharacterized protein LOC498316
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Related Pseudogenes:
Spata45-ps1
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 13 105,155,421 - 105,162,321 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 13 105,158,690 - 105,162,321 (+) Ensembl GRCr8 mRatBN7.2 13 102,624,298 - 102,631,191 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 13 102,625,273 - 102,631,191 (+) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 13 105,145,348 - 105,151,266 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 13 106,529,312 - 106,535,230 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 13 103,744,297 - 103,750,215 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 13 109,645,480 - 109,652,233 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 13 109,646,455 - 109,652,229 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 13 114,240,426 - 114,247,156 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 Celera 13 102,091,408 - 102,097,326 (+) NCBI Celera Cytogenetic Map 13 q27 NCBI
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Only show annotations with direct experimental evidence (0 objects hidden)
Spata45 Rat 1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactions ISO Spata45 (Mus musculus) 6480464 [2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ... CTD PMID:25510870 Spata45 Rat 2,2',4,4',5,5'-hexachlorobiphenyl multiple interactions ISO Spata45 (Mus musculus) 6480464 [2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ... CTD PMID:25510870 Spata45 Rat 2,2',5,5'-tetrachlorobiphenyl multiple interactions ISO Spata45 (Mus musculus) 6480464 [2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ... CTD PMID:25510870 Spata45 Rat 2,4,4'-trichlorobiphenyl multiple interactions ISO Spata45 (Mus musculus) 6480464 [2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ... CTD PMID:25510870 Spata45 Rat aflatoxin B1 decreases methylation ISO SPATA45 (Homo sapiens) 6480464 Aflatoxin B1 results in decreased methylation of SPATA45 intron CTD PMID:30157460 Spata45 Rat benzo[a]pyrene decreases expression ISO SPATA45 (Homo sapiens) 6480464 Benzo(a)pyrene results in decreased expression of SPATA45 mRNA CTD PMID:32234424 Spata45 Rat benzo[a]pyrene decreases methylation ISO SPATA45 (Homo sapiens) 6480464 Benzo(a)pyrene results in decreased methylation of SPATA45 promoter CTD PMID:27901495 Spata45 Rat dichloroacetic acid increases expression ISO Spata45 (Mus musculus) 6480464 Dichloroacetic Acid results in increased expression of SPATA45 mRNA CTD PMID:28962523 Spata45 Rat lipopolysaccharide multiple interactions ISO SPATA45 (Homo sapiens) 6480464 [S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of SPATA45 mRNA CTD PMID:35811015 Spata45 Rat PCB138 multiple interactions ISO Spata45 (Mus musculus) 6480464 [2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ... CTD PMID:25510870 Spata45 Rat propanal increases expression ISO SPATA45 (Homo sapiens) 6480464 propionaldehyde results in increased expression of SPATA45 mRNA CTD PMID:26079696 Spata45 Rat S-(1,2-dichlorovinyl)-L-cysteine multiple interactions ISO SPATA45 (Homo sapiens) 6480464 [S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of SPATA45 mRNA CTD PMID:35811015 Spata45 Rat S-(1,2-dichlorovinyl)-L-cysteine increases expression ISO SPATA45 (Homo sapiens) 6480464 S-(1,2-dichlorovinyl)cysteine results in increased expression of SPATA45 mRNA CTD PMID:35811015 Spata45 Rat silver atom increases expression ISO Spata45 (Mus musculus) 6480464 Silver results in increased expression of SPATA45 mRNA CTD PMID:27131904 Spata45 Rat silver(0) increases expression ISO Spata45 (Mus musculus) 6480464 Silver results in increased expression of SPATA45 mRNA CTD PMID:27131904
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO) 2,2',4,4',5,5'-hexachlorobiphenyl (ISO) 2,2',5,5'-tetrachlorobiphenyl (ISO) 2,4,4'-trichlorobiphenyl (ISO) aflatoxin B1 (ISO)
References
Genomics
Comparative Map Data
Spata45 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 13 105,155,421 - 105,162,321 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 13 105,158,690 - 105,162,321 (+) Ensembl GRCr8 mRatBN7.2 13 102,624,298 - 102,631,191 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 13 102,625,273 - 102,631,191 (+) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 13 105,145,348 - 105,151,266 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 13 106,529,312 - 106,535,230 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 13 103,744,297 - 103,750,215 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 13 109,645,480 - 109,652,233 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 13 109,646,455 - 109,652,229 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 13 114,240,426 - 114,247,156 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 Celera 13 102,091,408 - 102,097,326 (+) NCBI Celera Cytogenetic Map 13 q27 NCBI
SPATA45 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 212,830,141 - 212,847,649 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 212,830,141 - 212,847,649 (-) Ensembl hg38 GRCh38 GRCh37 1 213,003,483 - 213,020,991 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 211,070,106 - 211,087,614 (-) NCBI Build 36 Build 36 hg18 NCBI36 Celera 1 186,229,475 - 186,246,986 (-) NCBI Celera Cytogenetic Map 1 q32.3 NCBI HuRef 1 183,680,222 - 183,698,104 (-) NCBI HuRef T2T-CHM13v2.0 1 212,075,115 - 212,092,629 (-) NCBI T2T-CHM13v2.0
Spata45 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 1 190,768,106 - 190,775,139 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 1 190,768,836 - 190,775,139 (+) Ensembl GRCm39 Ensembl GRCm39 GRCm38 1 191,035,909 - 191,042,942 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 1 191,036,639 - 191,042,942 (+) Ensembl mm10 GRCm38 MGSCv37 1 192,860,701 - 192,866,820 (+) NCBI MGSCv37 MGSCv37 mm9 NCBIm37 MGSCv36 1 192,737,437 - 192,743,557 (+) NCBI MGSCv36 mm8 Celera 1 197,961,735 - 197,967,537 (+) NCBI Celera Cytogenetic Map 1 H6 NCBI cM Map 1 96.28 NCBI
miRNA Target Status (No longer updated)
Predicted Target Of
Count of predictions: 44 Count of miRNA genes: 35 Interacting mature miRNAs: 39 Transcripts: ENSRNOT00000073985 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction 
