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Gene: Tsc22d2 (TSC22 domain family, member 2) Rattus norvegicus

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Symbol:

Tsc22d2

Name:

TSC22 domain family, member 2

RGD ID:

1593169

Description:

Predicted to be involved in negative regulation of cell cycle. Predicted to act upstream of or within response to osmotic stress. Orthologous to human TSC22D2 (TSC22 domain family member 2); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC499624; similar to TSC22 domain family protein 2 (TSC22-related-inducible leucine zipper protein 4); TSC22 domain family protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TSC22D2 (TSC22 domain family member 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Tsc22d2 (TSC22 domain family, member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tsc22d2 (TSC22 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TSC22D2 (TSC22 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TSC22D2 (TSC22 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tsc22d2 (TSC22 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TSC22D2 (TSC22 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TSC22D2 (TSC22 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tsc22d2 (TSC22 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tsc22d2 (TSC22 domain family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tsc22d2 (TSC22 domain family, member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TSC22D2 (TSC22 domain family member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tsc22d2 (TSC22 domain family 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T18D3.7	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Caenorhabditis elegans (roundworm):	T18D3.7	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Drosophila melanogaster (fruit fly):	bun	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	tsc22d2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	144,796,760 - 144,847,930 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	144,796,841 - 144,843,559 (+)	Ensembl				GRCr8
mRatBN7.2	2	142,646,778 - 142,697,977 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	142,644,744 - 142,693,606 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	149,286,576 - 149,332,836 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	147,392,597 - 147,438,876 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	142,024,997 - 142,071,278 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	148,607,148 - 148,659,632 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	148,607,748 - 148,655,261 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	168,024,657 - 168,077,159 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	147,754,030 - 147,799,940 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	137,076,548 - 137,123,076 (+)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

keratoconus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dimethoxyphenol (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

amitrole (EXP)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

diclofenac (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furfural (ISO)

gentamycin (EXP)

glycidol (EXP)

hydrogen peroxide (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

ivermectin (ISO)

leflunomide (ISO)

Licochalcone B (ISO)

menadione (ISO)

methimazole (EXP)

methylisothiazolinone (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

PCB138 (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cell cycle (IEA,ISO)

regulation of transcription by RNA polymerase II (IEA)

response to osmotic stress (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17147695

Genomics

Comparative Map Data

Tsc22d2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	144,796,760 - 144,847,930 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	144,796,841 - 144,843,559 (+)	Ensembl				GRCr8
mRatBN7.2	2	142,646,778 - 142,697,977 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	142,644,744 - 142,693,606 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	149,286,576 - 149,332,836 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	147,392,597 - 147,438,876 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	142,024,997 - 142,071,278 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	148,607,148 - 148,659,632 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	148,607,748 - 148,655,261 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	168,024,657 - 168,077,159 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	147,754,030 - 147,799,940 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	137,076,548 - 137,123,076 (+)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

TSC22D2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	150,408,298 - 150,466,422 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	150,408,298 - 150,466,422 (+)	Ensembl			hg38	GRCh38
GRCh37	3	150,126,085 - 150,184,209 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	151,609,478 - 151,660,321 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	148,539,824 - 148,590,663 (+)	NCBI		Celera
Cytogenetic Map	3	q25.1	NCBI
HuRef	3	147,500,522 - 147,551,293 (+)	NCBI		HuRef
CHM1_1	3	150,089,862 - 150,140,705 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	153,159,594 - 153,217,686 (+)	NCBI		T2T-CHM13v2.0

Tsc22d2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	58,322,123 - 58,374,208 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	58,322,136 - 58,374,204 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	58,414,702 - 58,466,787 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	58,414,715 - 58,466,783 (+)	Ensembl			mm10	GRCm38
MGSCv37	3	58,219,611 - 58,270,709 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	58,503,618 - 58,554,716 (+)	NCBI		MGSCv36	mm8
Celera	3	58,108,756 - 58,159,832 (+)	NCBI		Celera
Cytogenetic Map	3	D	NCBI
cM Map	3	28.51	NCBI

Tsc22d2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955448	1,639,463 - 1,678,279 (+)	NCBI	ChiLan1.0	ChiLan1.0

TSC22D2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	148,292,168 - 148,349,039 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	148,298,654 - 148,360,073 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	147,426,058 - 147,484,285 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	155,000,654 - 155,051,795 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	155,001,006 - 155,050,323 (+)	Ensembl			panPan2	panpan1.1

TSC22D2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	45,086,583 - 45,136,094 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	45,087,628 - 45,133,903 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	44,952,592 - 45,000,409 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	45,715,000 - 45,762,894 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	45,715,169 - 45,764,337 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	45,304,490 - 45,352,300 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	45,356,892 - 45,404,722 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	45,607,951 - 45,655,781 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tsc22d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	90,871,162 - 90,922,455 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936758	845,528 - 892,059 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936758	845,359 - 898,937 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TSC22D2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	90,641,175 - 90,691,568 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	90,640,490 - 90,697,671 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	98,710,840 - 98,761,868 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TSC22D2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	40,232,247 - 40,284,936 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	40,233,732 - 40,283,899 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	13,053,315 - 13,105,931 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tsc22d2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	27,821,862 - 27,863,344 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	27,821,638 - 27,869,805 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tsc22d2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	96,953,602 - 96,999,369 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tsc22d2
159 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	374
Count of miRNA genes:	201
Interacting mature miRNAs:	277
Transcripts:	ENSRNOT00000015119
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	105628029	150628029	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	124103798	154505346	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	143565208	188565208	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	139067258	192287892	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	120039407	159440891	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	100807373	145807373	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	106869825	151869825	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
5135226	Leukc2	Leukocyte quantity QTL 2			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	2	120039407	151869825	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	93602631	145807373	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	139067258	184067258	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	143746578	205135428	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
7488933	Bp368	Blood pressure QTL 368		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	104957381	149957381	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	120339555	165339555	Rat
9685068	Swd7	Spike wave discharge measurement QTL 7	3.2	0.01	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge rate (CMO:0001739)	2	143806628	149738646	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	114032149	150226270	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	114440891	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	116804572	161804572	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat

Markers in Region

BF396992

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	142,649,265 - 142,649,452 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	148,610,238 - 148,610,424	NCBI	Rnor6.0
Rnor_5.0	2	168,027,719 - 168,027,905	UniSTS	Rnor5.0
RGSC_v3.4	2	147,756,212 - 147,756,398	UniSTS	RGSC3.4
Celera	2	137,078,730 - 137,078,916	UniSTS
RH 3.4 Map	2	864.9	UniSTS
Cytogenetic Map	2	q31	UniSTS

BQ199182

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	142,693,381 - 142,693,541 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	148,655,037 - 148,655,196	NCBI	Rnor6.0
Rnor_5.0	2	168,072,564 - 168,072,723	UniSTS	Rnor5.0
RGSC_v3.4	2	147,799,708 - 147,799,867	UniSTS	RGSC3.4
Celera	2	137,122,844 - 137,123,003	UniSTS
RH 3.4 Map	2	963.4	UniSTS
Cytogenetic Map	2	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001836486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015119 ⟹ ENSRNOP00000062527

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	144,796,841 - 144,843,559 (+)	Ensembl
mRatBN7.2 Ensembl	2	142,645,265 - 142,693,606 (+)	Ensembl
Rnor_6.0 Ensembl	2	148,608,056 - 148,655,261 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088139 ⟹ ENSRNOP00000073091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	144,796,841 - 144,843,559 (+)	Ensembl
mRatBN7.2 Ensembl	2	142,644,744 - 142,693,606 (+)	Ensembl
Rnor_6.0 Ensembl	2	148,607,748 - 148,653,168 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096983 ⟹ ENSRNOP00000095449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	142,644,744 - 142,693,606 (+)	Ensembl

RefSeq Acc Id:

NM_001191960 ⟹ NP_001178889

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	144,797,040 - 144,843,567 (+)	NCBI
mRatBN7.2	2	142,647,084 - 142,693,614 (+)	NCBI
Rnor_6.0	2	148,608,056 - 148,655,269 (+)	NCBI
Rnor_5.0	2	168,024,657 - 168,077,159 (+)	NCBI
Celera	2	137,076,548 - 137,123,076 (+)	NCBI

Sequence:

show sequence

ATGTCCAAGATGCCGGCCAAGAAGAAGAGCTGCTTCCAGATCACCAGTGTCACCACGGCCCAGG
TGGCCACTAGCATCACCGAGGACACCGAGAGCCTGGACGACCCGGACGAGTCGCGCACGGAGGA
CGTGTCCTCCGAGATCTTCGACGTTTCTCGGGCCACGGATTACGGCCCAGAGGAGGTGTGCGAG
CGCAGCTCCTCGGAAGAGACGCTCAACAATGTCGGGGATGCGGAAACTCCCGGGACTGTGTCCC
CGAACCTCATCCTAGATGGGCAGCTGGCAGCCGCTTCAGCTGTGCCCGCCAACGGAGGCGGCGG
CGTGCCGGCCCGGAGCGTGGCAGGGGCACTCTCCCAGACCCTGGCGGCGGTTGCCACTTCAGTG
TCTGCTCCTGGGCCAAGTAGTGCAACTCCATCTCAGCCCCCTGCCACTTGTAGTTCCCGTTTCC
GCGTGATCAAACTAGACCACGGGAGCGGAGAGCCGTATCGGCGCGGCCGATGGACGTGTATGGA
ATACTACGAGCGGGATTCAGATAGTAGCGTCCTCAGTAGGTCCGGGGATTGCATTAGACACAGC
AATACTTTGGAGCAGACTGCAGAGCGGGACAGCGGCTTGGGCGCCACCGGAGGGTCGGTGGTGG
TGGTGGTGGCCTCCATGCAGGGGGCGCACGGGCTGGACTCGGGAACTGACAGCTCCTTGACTGC
TGTGTCACAGCTACCCCCGTCGGAGAAAATGAGCCAGCCCACTCTCGCCCAGCCGCAGAGTTTC
AGCGTTGGGCAGCCACAGCCTCCACCGCCCGTAGGTGGGGCTGTGGCTCCAAGTTCGGTGTCGC
TGCCGCTGTTCCCCGGAGCAGCGACCGGGTCGCAGCCAATGACGGCAGCCACTCAGCCAACTCA
GCTCCAGGGAGCCGTAGCCGGCGGCGCCCTCCCCGGGCCTGTTGGCCAGGGGCTGCCGCCGCCG
CCGAATGTCAACCTGGCACAGCCTGTGGCCCTGACAGCTCAGCCTGGCCCGGCGGTCGGCTCCT
CGTTGTCACAGCAGTTCGCCTATCCCCAGCCTCCGATACCACCCGGGCATTTGTTGCCGGTCCA
GCCATCGGGCCAGAGTGAGTACCTGCCGCCGCACGTGGCCCTGCAGCCACCAAGCCCTGCGCAG
CCCTTGTCTACCAGCGCTAGCGCGACCTCTGCTTCAGCGGCCAGCTTTCCTCTGGGATCTGGCC
AGAGCGTTTCTTCCTTGGGTGCCCAGATGATGGGCGCCTCTGCCCAGCCCAGTGAAGTCGTGGC
CCCGGGTCCGGTTCCCGTGGGCCAGGCCGCTCCTTGTCAGCCGGCCGGAGTGGCCCCAGCTGCT
ATAGGAGGCGTGGTGCAGCCTGGCTCTGGGCTGACCGGGGTTGGGCAGCCCCAGTCCGTGCAGC
CTCCGCCACATATGGGTGGCAGTGTTCAGCTGTCAGCCGTGCCTGGTGGTCCTCACACCGTGGT
GCCCGGAGTTCCAAACGTGCCTGCAGCGGTACCCGTTCCAAGCGTGCCTGTTGTGCCCACCACT
TCTGTTACTATGCCAAATGTACCCGCGCCTCTGGGCCAGTCTCAGCAGCTGAGCGGCCATACGC
CAGTCAGCCGGAGCAGCAGCGTCATCCAGCAAGTTGGTCCACCCTTAGCGCAAGGCACACACAG
TGCACCAACAAGTCTACCACAGTCTGATCTAAGCCAGTTTCAGACTCAGACCCAGTCTTTAGTC
AGGCAAATTGACGATACTAGAAGAAAATCAGAACCCCTACCTCAAGCACCACTTTCTCTCATTG
CTGAAAATAAGCCTGTTGTGAAGCCTCCAGTTGCAGATGCCCTGGCAAACCCTCTTCAATTAAC
ACCTATGAACAGTCTGGCCACCTCTGTATTCAGCATAGCTATTCCTGTTGATGGTGATGAAGAC
AGGAATCCTTCAACCGCTTTCTACCAAGCGTTCCATTTGAACACGTTTCAGGAATCAAAGAGCC
TCTGGGATAGTGCATCTGGGGGCGGTGTTGTAGCCATTGACAACAAAATAGAACAAGCAATGGA
TCTGGTGAAAAGCCATTTGATGTATGCAGTAAGAGAAGAAGTGGAAGTTCTAAAGGAGCAGATA
AAAGAATTAGTGGAAAGAAACTCTTTACTTGAACGAGAAAATGCACTGTTAAAATCTCTTTCAA
ACAATGATCAGTTGTCCCAACTCCCAGCCCAACAGGCCAACCCTGGTAGCACTTCTCAACAACA
AGCAATGATAGCACAGCCTCCTCAGCCAACGCAACCTCCACAGCAGCCGAATGTCTCCTCAGCA
TAAAGCTTTCCTAAGCCTCGCTAAGGAAAAACTGAAAGCAATCTTTCCTTGTGTGCCACTGGTG
TTCTTTCCACTTTATAGAAAGCAAGTAGCCATGCTTCGGCTGTGTGCTTGGCCTTTTCAGTATT
AGACAATCGTTCTACAGGAGCTTTCCCTCTCTAAGATGTCATGCAGCACTGTTGATGTCCACTT
CTGTGTCATCAGTACACGAGGAGAATACTAGATGGGGTTTATTAAAGCAAGCAGAGTCTGCATT
CTACATGTGCGCATGAGTGGGATCTTTAAAAGTTTTGGTGGCTCTCCTATGTTTCTTACCACCC
ATGGATGTACCTTGAGCCTTCCTGTCGCATTATAAATAACAGTTCATCTAAAGAGCCACTTTTC
TTTCAATATCAGTAACATTTGCCTACATAAGTTTTCATTCATTTATTTTGTGTTTTATTTATTA
CAGGGCTGCTATTTTCATATTGTACATGAACAATGTCACAGAACTTTTTTAATTTTCTTGAATA
ATTATAAGTATCAGTAAAGGAATTGAACGACAGGATTACATTTAATAAATAAAAACGTTTAGGC
AATAATTGAACAAAAGAATCCTGGCACATTTCTAACACTAATGGCAATTTACCGTTGGTATTTA
TTTTCAATAGTAAAGATCCAGCTTGAATGTAAATTTTGTATAGTTGTAAGTATGAAAAACACAG
TGCACCTGTACAGGTAGTCACCAGTTATTGTGATATAATAATAATTGGGCTATTTTCATGAAGA
AAACGTTGTTCATTTGTTTCTACTTTCTAATAGAAATTGCCACGATTCCTCTGCTTTTCAACAT
TTCGTATGACTTTTTTTTTTTTTTTTTTTTTTTCGGGTGGGAATAAAAAAAGCTGTGAAATTGT
TCAACCTACTTTGTAACCAAAGAAGCAAAGCTGTGTAATGGAGTTTTGTTTTGTTTTATAATGC
ACATTCTTTATGTATTTTTATTTAGTGTTTTCTTGGTCACAATTTTCTTTGCTGTCTAGCATGA
TCTGCATGGCCTGTAATCTTTGAACCACTTTCGTACCTCATGTTTTTATCCAGCACTCTTATTG
TACTGTGTACTAGTCTGTGAACAATGTCAAATAAAAAAGAGCGAACAGGTCGTATGGTGGAGCT
GAGCTAGTGTACAATGCACCAGTTGTACAGAAACAAAAATGAAGTGAGCCATCTTTTGTTCATT
TAAAATGGTGTTTTGAATTTCATATGCAGAAAACGTTTTGTTACATTGCAGATTTTAATGTATT
TAATAAATGCAACATGCAGATTAAGTGCAGTGTATACTGAGTATTTAAATTAAAATGTACATTT
CATAAATACAGTTTCAAGAGAAAGCATCATTTTGTGTATACTAACACATTAAGTGTATGTCAGA
AATTGATGTAAAAATATATATTTTAACACATTTTCTGAAATTAAACTACAGTTTTGTTCAAATA
TTTGGCTCTATATGTGTTCAGAATTTGACTAGATTTGTATTTTCACAGTTCAAAATATTCCTTA
AGTGAACACCCATGATGTTAATGACAATGATAGTTCTTAAATTTTCAAAGTAAAGTAATTTAAA
GAACACAAGAATGGTGAGCAATATTTGTACTCAATATTCATATTATGTTAACAATATAAATAGG
AAATCCTTGTCTACCAAAACTTTTACTTGAATTCAGAAAGGTGCCTGTAGAAATGAACATGTCC
TGTATGGGTAGCCCACTAGCCAATTAAGTCTTAATTAACATGTCCTGTATGGGTAGCCCACTAG
CTAATTAAGTCCTAATGAGAAACAGTAGTTGCTCTCCATGTTAGAAGAGGTTAAATGTTCTTTA
TCTATTTGAAATGTTCTAGCTTTGAACAAAAGACATAAAATTGAAACATACATGAGATTACCAA
ATATTTTATATTCTAGTTGTGCTACGAGAAATAATGTTCAGTAAGCAAAATTTTCATGTTAATT
ATTAATATTAGAAATACATTAAAGAATAGGTAAGTATGTTGACTTGAGTATGTAATAACCCTAA
GGATTCAGAATGAGATTCTAGTAGAGCCACTGTGGGCAAGATAGGATGTGAAACTGCTGTTGGA
ATATAAACCTGAAGATTTCTCTCCATGCCCACTTCATTGCTAATAGTGTGGTACTTCATACAAA
GAATATTAGAAAAGGGTTGCAAAAGGAGACAGTTAAGTGGTAGATGGCTGCCCAAGAATGCACA
AGATCTTCTGTTTGTTTGATGCCTGGCACTTAAAAGAAAAAAAATGTTTTTGTGAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232386 ⟹ XP_006232448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	144,796,760 - 144,847,930 (+)	NCBI
mRatBN7.2	2	142,646,778 - 142,697,977 (+)	NCBI
Rnor_6.0	2	148,607,155 - 148,659,632 (+)	NCBI
Rnor_5.0	2	168,024,657 - 168,077,159 (+)	NCBI

Sequence:

show sequence

TTTTAGTCTGCGGCGGCAGCGGCTGCGGGGCTGCTGCTCCTCCCAGCATCCCTGGCGCGGCCAT
TTCAGCCCCATCTTGGCCGAGTGGAGGGAGCTGCAGCCGCTGCTTCAGCAGTTTGAATTTCAGT
TTTTCCGGAGTCTACGAACCGGCCGCGCCGAGGAGAAGCGGAAGACGCCTCCACCGGTCCCCCT
CACGCCGCCGAGCGCCTCCGCACGCTTGCCGTTCCTTCAGCCGCCGCCGCCCCTCACGCGCCTC
AGAGCCGCGAGGAGGCCGGGCCCGCCGCAGCGGGTGGCTCCCTGAGGGAGGCCAGACTGCCGGC
CTTCCCCGCCCCCGAGCGGGCTTCCGCCGCCACCGCCGGCATGGCCCCGGGACTGCGCTCGGGC
TAGAGCCCGGGACGGAGGGCTGCCTCCCGCCGCGGACCTCCAGCCCCGTCAGGAAGCGCCGGTC
CCGGCCTCGCCGCTCCGCCTTCTTCCTCCGCGTCGCCGCGCGGGAGCAGCCGCGGGACCCGGCC
AAAAGAGCCCGAGCGGGGCAGAACCGCCCCTCACGCCGCCGCCGCCGCCTCCTGCGCCCTGCGC
TCCACCCCCAGCCGGGCCTGCTGACCGCGCCGAGCGCCGGGCTGGACTGACCGCGGCGGCTGAG
CTGTGCGAGCAGCCGGCCCGCCCCTGAACCACGCTCGGACCGTCACTGACGGGTTGAATTGAGG
CACCACTGCCGCGGGAGGTGAGAAGGAAGGAGGAGGATGTCGCGCCTAGACGCCGGCGCCCAGA
GCAGCCCGTGACTTGCGGCGTGGGCCGTAGACCCAGGCGCGAACTCGGACTTTGTCTTTGGGGG
CCCGTGCTCGGCCCTTCTCGGTTTCCGGTGGGGTCCCAGAGGAGCCTCTGTCCTCCAGCCTTTT
CCACCATGTCCAAGATGCCGGCCAAGAAGAAGAGCTGCTTCCAGATCACCAGTGTCACCACGGC
CCAGGTGGCCACTAGCATCACCGAGGACACCGAGAGCCTGGACGACCCGGACGAGTCGCGCACG
GAGGACGTGTCCTCCGAGATCTTCGACGTTTCTCGGGCCACGGATTACGGCCCAGAGGAGGTGT
GCGAGCGCAGCTCCTCGGAAGAGACGCTCAACAATGTCGGGGATGCGGAAACTCCCGGGACTGT
GTCCCCGAACCTCATCCTAGATGGGCAGCTGGCAGCCGCTTCAGCTGTGCCCGCCAACGGAGGC
GGCGGCGTGCCGGCCCGGAGCGTGGCAGGGGCACTCTCCCAGACCCTGGCGGCGGTTGCCACTT
CAGTGTCTGCTCCTGGGCCAAGTAGTGCAACTCCATCTCAGCCCCCTGCCACTTGTAGTTCCCG
TTTCCGCGTGATCAAACTAGACCACGGGAGCGGAGAGCCGTATCGGCGCGGCCGATGGACGTGT
ATGGAATACTACGAGCGGGATTCAGATAGTAGCGTCCTCAGTAGGTCCGGGGATTGCATTAGAC
ACAGCAATACTTTGGAGCAGACTGCAGAGCGGGACAGCGGCTTGGGCGCCACCGGAGGGTCGGT
GGTGGTGGTGGTGGCCTCCATGCAGGGGGCGCACGGGCTGGACTCGGGAACTGACAGCTCCTTG
ACTGCTGTGTCACAGCTACCCCCGTCGGAGAAAATGAGCCAGCCCACTCTCGCCCAGCCGCAGA
GTTTCAGCGTTGGGCAGCCACAGCCTCCACCGCCCGTAGGTGGGGCTGTGGCTCCAAGTTCGGT
GTCGCTGCCGCTGTTCCCCGGAGCAGCGACCGGGTCGCAGCCAATGACGGCAGCCACTCAGCCA
ACTCAGCTCCAGGGAGCCGTAGCCGGCGGCGCCCTCCCCGGGCCTGTTGGCCAGGGGCTGCCGC
CGCCGCCGAATGTCAACCTGGCACAGCCTGTGGCCCTGACAGCTCAGCCTGGCCCGGCGGTCGG
CTCCTCGTTGTCACAGCAGTTCGCCTATCCCCAGCCTCCGATACCACCCGGGCATTTGTTGCCG
GTCCAGCCATCGGGCCAGAGTGAGTACCTGCCGCCGCACGTGGCCCTGCAGCCACCAAGCCCTG
CGCAGCCCTTGTCTACCAGCGCTAGCGCGACCTCTGCTTCAGCGGCCAGCTTTCCTCTGGGATC
TGGCCAGAGCGTTTCTTCCTTGGGTGCCCAGATGATGGGCGCCTCTGCCCAGCCCAGTGAAGTC
GTGGCCCCGGGTCCGGTTCCCGTGGGCCAGGCCGCTCCTTGTCAGCCGGCCGGAGTGGCCCCAG
CTGCTATAGGAGGCGTGGTGCAGCCTGGCTCTGGGCTGACCGGGGTTGGGCAGCCCCAGTCCGT
GCAGCCTCCGCCACATATGGGTGGCAGTGTTCAGCTGTCAGCCGTGCCTGGTGGTCCTCACACC
GTGGTGCCCGGAGTTCCAAACGTGCCTGCAGCGGTACCCGTTCCAAGCGTGCCTGTTGTGCCCA
CCACTTCTGTTACTATGCCAAATGTACCCGCGCCTCTGGGCCAGTCTCAGCAGCTGAGCGGCCA
TACGCCAGTCAGCCGGAGCAGCAGCGTCATCCAGCAAGTTGGTCCACCCTTAGCGCAAGGCACA
CACAGTGCACCAACAAGTCTACCACAGTCTGATCTAAGCCAGTTTCAGACTCAGACCCAGTCTT
TAGTCAGGCAAATTGACGATACTAGAAGAAAATCAGAACCCCTACCTCAAGCACCACTTTCTCT
CATTGCTGAAAATAAGCCTGTTGTGAAGCCTCCAGTTGCAGATGCCCTGGCAAACCCTCTTCAA
TTAACACCTATGAACAGTCTGGCCACCTCTGTATTCAGCATAGCTATTCCTGTTGATGGTGATG
AAGACAGTGCATCTGGGGGCGGTGTTGTAGCCATTGACAACAAAATAGAACAAGCAATGGATCT
GGTGAAAAGCCATTTGATGTATGCAGTAAGAGAAGAAGTGGAAGTTCTAAAGGAGCAGATAAAA
GAATTAGTGGAAAGAAACTCTTTACTTGAACGAGAAAATGCACTGTTAAAATCTCTTTCAAACA
ATGATCAGTTGTCCCAACTCCCAGCCCAACAGGCCAACCCTGGTAGCACTTCTCAACAACAAGC
AATGATAGCACAGCCTCCTCAGCCAACGCAACCTCCACAGCAGCCGAATGTCTCCTCAGCATAA
AGCTTTCCTAAGCCTCGCTAAGGAAAAACTGAAAGCAATCTTTCCTTGTGTGCCACTGGTGTTC
TTTCCACTTTATAGAAAGCAAGTAGCCATGCTTCGGCTGTGTGCTTGGCCTTTTCAGTATTAGA
CAATCGTTCTACAGGAGCTTTCCCTCTCTAAGATGTCATGCAGCACTGTTGATGTCCACTTCTG
TGTCATCAGTACACGAGGAGAATACTAGATGGGGTTTATTAAAGCAAGCAGAGTCTGCATTCTA
CATGTGCGCATGAGTGGGATCTTTAAAAGTTTTGGTGGCTCTCCTATGTTTCTTACCACCCATG
GATGTACCTTGAGCCTTCCTGTCGCATTATAAATAACAGTTCATCTAAAGAGCCACTTTTCTTT
CAATATCAGTAACATTTGCCTACATAAGTTTTCATTCATTTATTTTGTGTTTTATTTATTACAG
GGCTGCTATTTTCATATTGTACATGAACAATGTCACAGAACTTTTTTAATTTTCTTGAATAATT
ATAAGTATCAGTAAAGGAATTGAACGACAGGATTACATTTAATAAATAAAAACGTTTAGGCAAT
AATTGAACAAAAGAATCCTGGCACATTTCTAACACTAATGGCAATTTACCGTTGGTATTTATTT
TCAATAGTAAAGATCCAGCTTGAATGTAAATTTTGTATAGTTGTAAGTATGAAAAACACAGTGC
ACCTGTACAGGTAGTCACCAGTTATTGTGATATAATAATAATTGGGCTATTTTCATGAAGAAAA
CGTTGTTCATTTGTTTCTACTTTCTAATAGAAATTGCCACGATTCCTCTGCTTTTCAACATTTC
GTATGACTTTTTTTTTTTTTTTTTTTTTTTCGGGTGGGAATAAAAAAAGCTGTGAAATTGTTCA
ACCTACTTTGTAACCAAAGAAGCAAAGCTGTGTAATGGAGTTTTGTTTTGTTTTATAATGCACA
TTCTTTATGTATTTTTATTTAGTGTTTTCTTGGTCACAATTTTCTTTGCTGTCTAGCATGATCT
GCATGGCCTGTAATCTTTGAACCACTTTCGTACCTCATGTTTTTATCCAGCACTCTTATTGTAC
TGTGTACTAGTCTGTGAACAATGTCAAATAAAAAAGAGCGAACAGGTCGTATGGTGGAGCTGAG
CTAGTGTACAATGCACCAGTTGTACAGAAACAAAAATGAAGTGAGCCATCTTTTGTTCATTTAA
AATGGTGTTTTGAATTTCATATGCAGAAAACGTTTTGTTACATTGCAGATTTTAATGTATTTAA
TAAATGCAACATGCAGATTAAGTGCAGTGTATACTGAGTATTTAAATTAAAATGTACATTTCAT
AAATACAGTTTCAAGAGAAAGCATCATTTTGTGTATACTAACACATTAAGTGTATGTCAGAAAT
TGATGTAAAAATATATATTTTAACACATTTTCTGAAATTAAACTACAGTTTTGTTCAAATATTT
GGCTCTATATGTGTTCAGAATTTGACTAGATTTGTATTTTCACAGTTCAAAATATTCCTTAAGT
GAACACCCATGATGTTAATGACAATGATAGTTCTTAAATTTTCAAAGTAAAGTAATTTAAAGAA
CACAAGAATGGTGAGCAATATTTGTACTCAATATTCATATTATGTTAACAATATAAATAGGAAA
TCCTTGTCTACCAAAACTTTTACTTGAATTCAGAAAGGTGCCTGTAGAAATGAACATGTCCTGT
ATGGGTAGCCCACTAGCCAATTAAGTCTTAATTAACATGTCCTGTATGGGTAGCCCACTAGCTA
ATTAAGTCCTAATGAGAAACAGTAGTTGCTCTCCATGTTAGAAGAGGTTAAATGTTCTTTATCT
ATTTGAAATGTTCTAGCTTTGAACAAAAGACATAAAATTGAAACATACATGAGATTACCAAATA
TTTTATATTCTAGTTGTGCTACGAGAAATAATGTTCAGTAAGCAAAATTTTCATGTTAATTATT
AATATTAGAAATACATTAAAGAATAGGTAAGTATGTTGACTTGAGTATGTAATAACCCTAAGGA
TTCAGAATGAGATTCTAGTAGAGCCACTGTGGGCAAGATAGGATGTGAAACTGCTGTTGGAATA
TAAACCTGAAGATTTCTCTCCATGCCCACTTCATTGCTAATAGTGTGGTACTTCATACAAAGAA
TATTAGAAAAGGGTTGCAAAAGGAGACAGTTAAGTGGTAGATGGCTGCCCAAGAATGCACAAGA
TCTTCTGTTTGTTTGATGCCTGGCACTTAAAAGAAAAAAAATGTTTTTGTGAAAAAAAAGAAAT
GAGTTTTTATTCTAGGGATAGAAAAACAAAATATAGTATCCACCAAGAAAATCATTACTATTCT
AAGGTTAAAAAATGATGACAGCAATTGCTACTACTTGCATCTTTTTAAAGGGAGCAAAAATCCT
AGAAAATGGTTAAAAAAAATCCTAAAGGATTGACTTCTAAAAAATGCAAATCATTTAAATCAGT
TATAGCTTTTAAATAGTAGGGATTAATGTGATAAGGTGGGCTTTTCTGTATTCTCCAGAATGAA
ATCTGGCAGTGTATATTAAGAGCTTTGAATATTAATAAACAAGCTTAGTGGTGTGAGGCTTAAG
GAGCAGTGTTCAAAAACTGCAGTCGTGTGCTTGCCCTATATAGTCATTCCTTCCCTGGGATACA
CAAGTTGTTATTGATTGCCTACCCTGTCCCCTATTTAAGTTGTGTAATGAAGTTTACATCTAAA
TCTGTTTCCCACTTTCATGAGGCACACTGAACTCCAGAGACAGGAACAAACGTGAACCAGGTAT
TGTGCTTTTATTTGGAAATATTTGAATTTGAATAATTTCCTAATTGGTTTGTTAATGATCTTCA
TTTAGATTAGGTCTTTGTTGGGGTTAGTCTCTGAATACTTAAGACTATCAACTAGTTGAAATTC
CAATTTGTGAAGTAAGTCTTTTGGGAATGTCATCTACCTTTAATTTTCTGTGTCAGCCTATAGA
CCAGGTGCTAATACATAAGCTTTATGTTGGCTTAATTTTCTAAAAAGTACTGCATGTACAGTTG
CAAACTAATTTTGCCCAAAGGAAATTCTTTTTAGGTAATGCTAATGTAATCTTAAGATCTAGCC
AACAAAACAAAAAAGTGTAGGGAGTTGGAGAATTAAGCATTCTGATATTTTAACTGTTGGAGGA
AACTATTTATCCCAGATGACAGGTCCTTTATAGTGGATGTGTTTCATTTCTCTTCAGTGATTCT
GTTGAAAGGCGAAAGGCCAGTCCTCAGGCTTCACACTTGAATTGAGGCTACACAAACCAACCAG
TAGGGTGAGACAAGAAATACAGTAAAGGATGGCTTTCTCAAGGGGTTCCTGAAACGGTGACATC
TAATACTTGAAGGTCACAAGAGGAAGAGTGTGTTCCAAACACAAGAAAAGTCTGCTCAAAGTTC
TGAAAGCATAAACGGGGCTCCTAAAGAGCACAGAATTTTGTGAGAGGGAAACTAGAAATAACTG
CCTCATCAGTGTCGGTAGTTTGGCTTTATTAACAAGAATGGTTCAGTGAATGATGACTAGTGGG
ATAAGCTGAGTTCAGTTCATTGGAAGAGTGGTGGGTGGAAACAGGAGACTGTTTAGAAAAGTCC
AGAAAAGTGGTGAGACAGCATTTCTGTGGGGCAAATTGAAATTTATTGAAGTTGAGAATTCGCA
ACCCTTTCTCAGTGAATATTCCACTTCCAGAATCAGCACTTTGTTCTTTGGTTCTTTGAGAAAA
AAAGCACCTCAGCCAATACTTGTAAGTTTAGTCAGTCTCATGCCCAGGAACCATGCATCTCTAC
AAAATTAAGGTCTTTGTTTCCTGTTGAAGGAATTGCAAGAATTTGACCGAAGAGTGGGGCACAC
AGGAATTTGGTCACGCTATGGTTCTGTAGACTCAGCCCAATGGTAAACAATTGAATCTTCCTCT
GATGACTTTGGTCACCATAATTCCACAGCCTTTCCAGTCCCTTGCTTCCTGAAGAGATAGTATG
GATTCTGACTCCAGTGCAAGTACTGACATCTAAGAATAGGTTTTCCTTTAACATTGCCTTTCAT
TCGCTAACATAGGTCAGCCCTGCAGCCTTCTCTTCAATACTCTGCTAATGCAATAACAAACCTC
TCCTGCCCTGCCTCAAGCCCCCTCCCAATAATTCATGTTTCAATTTTCTAATACTAATCTCTGA
TGTTTGCACCAATTGGCCCATCATTTGATCTTCCAGGGTACATCCCTGTCTCACAGTTTCATAA
CAGGTTACGAATTTCTCTATTTCAATCTTTTTCCATGTGCGTCTTTCCTATATATGTGAAGGGT
TATTATACAAGAGTTCCCTTAGTGGTCTATATCAGTCTGATGTGTTCAAATGGAGGAATTGCTG
AGTACTATAGAAAACAAGTTAAAGTTCACAGACTTGCACTTTTTCTTTTCTCTCTGTTTTAATG
GAATTAAAAAATGAGCAGTCTTTGAGGGATTGGTGATTAGTGATGGCAAGATAAGCTGTTATTT
TGTGATGGCACAGTCTACTTGGAAACTTACTTTGTTCAACATGATTGGATAGTGAGTTAGCTTT
GTGGGTTTTGTTTTGTTTGTTTTTTCTTGCCAGGGAACCTGATAAATTAGGCAGTTTGGAGTGT
TTCCTTACTGCCTTTCATAGATCCAGAGTCCATATGTTTACAGACTAGGACCTGCCCACAGAAG
CCATAATGTTCCTCTGAAAGAAGGAAGGAAAAGAAATTGCTAAGTTTCAAAAGAGATTGGAGAT
TAAGACAAGCCAAATGATGCACTTCGGCTTTCCCATAATAAAATTTAAGGTTACTCGTAGTGCC
AACTGTTTGCATGCTTTCATTATTTCCATAAAATAACCGTAAAGTGCTCTTGCCCACTGCAATT
CAAAATGTCTTCCAGATCATAGTTTCTGTCATCTTGCAATTACTACATTGATAGATAAACCTGA
AGACTGAAGAGAAGGAAACATCTCCCACACATGGCATATATAATACTAGGCCAGTGTCTAGTTC
TAGCTCACTGAAAAAATATATAAATTCCCTTAATAAGGTAGTAGTCTTCACAGATAAATATGCT
GATGTTTGAGGAAGTAATTTGGGCTTCATTTGTATTTTATTTCCTAGAAACGTTGAAAAGCAAT
TTAATTCTATCTTAACTGAGGTGCTTAACCCTATACTGAATGTTTGAGGACAGAAAGCTGTTTA
GGACATGATTTATGCTCCCAACCCCAACCTCAGGATCTCCTCATCCAATGCGAAAGTAGAAGAT
GAAGTACCATGTTCCTTGTCCACAATGAATACGGTTTATAGACCTTGTTTGTTAGGTGGAAGGA
TCTCTAAGTCAGTAATAATTTGCTGTGTCATGTGAAATCTTTTGCCATTGCCAGGAAATAACTA
AATCACCAAAAAGCTTTAGCATCAAATAATCCTTCTAGAAAGAGGAGACCAGACAAAAGAAGAC
TTTTCATGCCTATACTGAGCCTGGGAGGTCACCCCAAAAAAGAACTAATCTGAGAGAGACGTTT
ACACATTTTTAATACTCTCGGTTTGTAGATAATTGATCTAATTTAACCTAACTTGACTAGAATT
TACATGTCATGAATTATATTGTCTCGTCTCATAAGCAACATGCATTTTGGCTGTTCTCATCAGC
TATCATTCAATGAATGAAGTTAATAACTCAGGTACCTGATGCCAAAAAAGAATCTCTACTAGGA
CTGAGAATTCTGAGATAAATACAAGGCTATATGCTAGGTAAGTGGTAAGCCCTACAGTTCAGAT
CAGTAGGGAAAGAATGGCTTAGTCAACAGGCAGTATTGAAACTGTAACCTTTGAGGGTAAAGAA
GGTAAGCTTAGCTCTCTCACAAAAATTAGAAATTCCAGCTGCACTAGAAGTGAGACTTCTACTT
TCTGAAATTCAAATCTTTGATATGCATGAAAATGAATAGTTTTACAAGTAAAGTACAAAGAGAT
GCTCGGCCTCAGCAAAGCAAAGTGCACATGAAACACTATCTCAGATCCAGTTGGTGACTATTAG
ACACATAAGGATTAAGAGCTGACAAATGTGCAAAAACAGGAATCTGATGTAAAGTTTGCACAGT
CACTTTTAAAGGCAGCTGGGTAATGTCCAGTAAAGTTGAAATTTTAGATGCCCTATGACCCAAT
GGATCCAATTTTTAATATCTACCCTAAAGAAACACACATATTCACAAGGCAGCTTCTACGAATA
TAAAATTGGAAAAATCAAAATCTACCAAGATAATGGAATATGCTAGATGCTATAAAATATTAGG
TATCAGTGAACAAGAGTGAAGGACTGTATGCTGACAGTAGATCTCTAGGACGCAATGTTAAATT
TGTTAAAGTTTGGGGGGAAATACATGTAATACACATGATACTGTTGACGTTTAAAAAAATGCCA
TACACAATACTGTATAGTGTACTTCTGCAAATAACTATCTGTGTACAATATAAATAGAGAGTTT
GGAAGGATACTAACCAAGCTGTTTACAGTAGTTTGGCGGTGTGCGTTAGCTTAAAGTGTAATAT
TTGATGTTTGTGAATTTGCATTCATGTACTGTTTCTGTAGTAACATTAATAAATTAGAAATAAA
ATGAAA

hide sequence

RefSeq Acc Id:

XR_001836486

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	144,796,760 - 144,840,380 (+)	NCBI
mRatBN7.2	2	142,646,778 - 142,691,135 (+)	NCBI
Rnor_6.0	2	148,607,148 - 148,652,732 (+)	NCBI

Sequence:

show sequence

GGCGGCATTTTAGTCTGCGGCGGCAGCGGCTGCGGGGCTGCTGCTCCTCCCAGCATCCCTGGCG
CGGCCATTTCAGCCCCATCTTGGCCGAGTGGAGGGAGCTGCAGCCGCTGCTTCAGCAGTTTGAA
TTTCAGTTTTTCCGGAGTCTACGAACCGGCCGCGCCGAGGAGAAGCGGAAGACGCCTCCACCGG
TCCCCCTCACGCCGCCGAGCGCCTCCGCACGCTTGCCGTTCCTTCAGCCGCCGCCGCCCCTCAC
GCGCCTCAGAGCCGCGAGGAGGCCGGGCCCGCCGCAGCGGGTGGCTCCCTGAGGGAGGCCAGAC
TGCCGGCCTTCCCCGCCCCCGAGCGGGCTTCCGCCGCCACCGCCGGCATGGCCCCGGGACTGCG
CTCGGGCTAGAGCCCGGGACGGAGGGCTGCCTCCCGCCGCGGACCTCCAGCCCCGTCAGGAAGC
GCCGGTCCCGGCCTCGCCGCTCCGCCTTCTTCCTCCGCGTCGCCGCGCGGGAGCAGCCGCGGGA
CCCGGCCAAAAGAGCCCGAGCGGGGCAGAACCGCCCCTCACGCCGCCGCCGCCGCCTCCTGCGC
CCTGCGCTCCACCCCCAGCCGGGCCTGCTGACCGCGCCGAGCGCCGGGCTGGACTGACCGCGGC
GGCTGAGCTGTGCGAGCAGCCGGCCCGCCCCTGAACCACGCTCGGACCGTCACTGACGGGTTGA
ATTGAGGCACCACTGCCGCGGGAGGTGAGAAGGAAGGAGGAGGATGTCGCGCCTAGACGCCGGC
GCCCAGAGCAGCCCGTGACTTGCGGCGTGGGCCGTAGACCCAGGCGCGAACTCGGACTTTGTCT
TTGGGGGCCCGTGCTCGGCCCTTCTCGGTTTCCGGTGGGGTCCCAGAGGAGCCTCTGTCCTCCA
GCCTTTTCCACCATGTCCAAGATGCCGGCCAAGAAGAAGAGCTGCTTCCAGATCACCAGTGTCA
CCACGGCCCAGGTGGCCACTAGCATCACCGAGGACACCGAGAGCCTGGACGACCCGGACGAGTC
GCGCACGGAGGACGTGTCCTCCGAGATCTTCGACGTTTCTCGGGCCACGGATTACGGCCCAGAG
GAGGTGTGCGAGCGCAGCTCCTCGGAAGAGACGCTCAACAATGTCGGGGATGCGGAAACTCCCG
GGACTGTGTCCCCGAACCTCATCCTAGATGGGCAGCTGGCAGCCGCTTCAGCTGTGCCCGCCAA
CGGAGGCGGCGGCGTGCCGGCCCGGAGCGTGGCAGGGGCACTCTCCCAGACCCTGGCGGCGGTT
GCCACTTCAGTGTCTGCTCCTGGGCCAAGTAGTGCAACTCCATCTCAGCCCCCTGCCACTTGTA
GTTCCCGTTTCCGCGTGATCAAACTAGACCACGGGAGCGGAGAGCCGTATCGGCGCGGCCGATG
GACGTGTATGGAATACTACGAGCGGGATTCAGATAGTAGCGTCCTCAGTAGGTCCGGGGATTGC
ATTAGACACAGCAATACTTTGGAGCAGACTGCAGAGCGGGACAGCGGCTTGGGCGCCACCGGAG
GGTCGGTGGTGGTGGTGGTGGCCTCCATGCAGGGGGCGCACGGGCTGGACTCGGGAACTGACAG
CTCCTTGACTGCTGTGTCACAGCTACCCCCGTCGGAGAAAATGAGCCAGCCCACTCTCGCCCAG
CCGCAGAGTTTCAGCGTTGGGCAGCCACAGCCTCCACCGCCCGTAGGTGGGGCTGTGGCTCCAA
GTTCGGTGTCGCTGCCGCTGTTCCCCGGAGCAGCGACCGGGTCGCAGCCAATGACGGCAGCCAC
TCAGCCAACTCAGCTCCAGGGAGCCGTAGCCGGCGGCGCCCTCCCCGGGCCTGTTGGCCAGGGG
CTGCCGCCGCCGCCGAATGTCAACCTGGCACAGCCTGTGGCCCTGACAGCTCAGCCTGGCCCGG
CGGTCGGCTCCTCGTTGTCACAGCAGTTCGCCTATCCCCAGCCTCCGATACCACCCGGGCATTT
GTTGCCGGTCCAGCCATCGGGCCAGAGTGAGTACCTGCCGCCGCACGTGGCCCTGCAGCCACCA
AGCCCTGCGCAGCCCTTGTCTACCAGCGCTAGCGCGACCTCTGCTTCAGCGGCCAGCTTTCCTC
TGGGATCTGGCCAGAGCGTTTCTTCCTTGGGTGCCCAGATGATGGGCGCCTCTGCCCAGCCCAG
TGAAGTCGTGGCCCCGGGTCCGGTTCCCGTGGGCCAGGCCGCTCCTTGTCAGCCGGCCGGAGTG
GCCCCAGCTGCTATAGGAGGCGTGGTGCAGCCTGGCTCTGGGCTGACCGGGGTTGGGCAGCCCC
AGTCCGTGCAGCCTCCGCCACATATGGGTGGCAGTGTTCAGCTGTCAGCCGTGCCTGGTGGTCC
TCACACCGTGGTGCCCGGAGTTCCAAACGTGCCTGCAGCGGTACCCGTTCCAAGCGTGCCTGTT
GTGCCCACCACTTCTGTTACTATGCCAAATGTACCCGCGCCTCTGGGCCAGTCTCAGCAGCTGA
GCGGCCATACGCCAGTCAGCCGGAGCAGCAGCGTCATCCAGCAAGTTGGTCCACCCTTAGCGCA
AGGCACACACAGTGCACCAACAAGTCTACCACAGTCTGATCTAAGCCAGTTTCAGACTCAGACC
CAGTCTTTAGTCAGGCAAATTGACGATACTAGAAGAAAATCAGAACCCCTACCTCAAGCACCAC
TTTCTCTCATTGCTGAAAATAAGCCTGTTGTGAAGCCTCCAGTTGCAGATGCCCTGGCAAACCC
TCTTCAATTAACACCTATGAACAGTCTGGCCACCTCTGTATTCAGCATAGCTATTCCTGTTGAT
GGTGATGAAGACAGAATTTTTTTTAGAATTCAGCATCGGAGGAGGAATGTGACATAATAATGAT
CGAAAGCCGAAAGTTTAAAAGTTGTGATGCCCTCACATGGTGGAGGGTTATTCTAGCTTCTAAG
GACTGAATGTTGTCCACAAGAGTGTCTCATCAGGTCATAAATTGTGCATCTGGGGGCGGTGTTG
TAGCCATTGACAACAAAATAGAACAAGCAATGGATCTGGTGAAAAGCCATTTGAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001178889	(Get FASTA)	NCBI Sequence Viewer
	XP_006232448	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM14867	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062527
	ENSRNOP00000062527.1
	ENSRNOP00000073091
	ENSRNOP00000073091.1

RefSeq Acc Id:

NP_001178889 ⟸ NM_001191960

- UniProtKB:

D3ZDW3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSKMPAKKKSCFQITSVTTAQVATSITEDTESLDDPDESRTEDVSSEIFDVSRATDYGPEEVCE
RSSSEETLNNVGDAETPGTVSPNLILDGQLAAASAVPANGGGGVPARSVAGALSQTLAAVATSV
SAPGPSSATPSQPPATCSSRFRVIKLDHGSGEPYRRGRWTCMEYYERDSDSSVLSRSGDCIRHS
NTLEQTAERDSGLGATGGSVVVVVASMQGAHGLDSGTDSSLTAVSQLPPSEKMSQPTLAQPQSF
SVGQPQPPPPVGGAVAPSSVSLPLFPGAATGSQPMTAATQPTQLQGAVAGGALPGPVGQGLPPP
PNVNLAQPVALTAQPGPAVGSSLSQQFAYPQPPIPPGHLLPVQPSGQSEYLPPHVALQPPSPAQ
PLSTSASATSASAASFPLGSGQSVSSLGAQMMGASAQPSEVVAPGPVPVGQAAPCQPAGVAPAA
IGGVVQPGSGLTGVGQPQSVQPPPHMGGSVQLSAVPGGPHTVVPGVPNVPAAVPVPSVPVVPTT
SVTMPNVPAPLGQSQQLSGHTPVSRSSSVIQQVGPPLAQGTHSAPTSLPQSDLSQFQTQTQSLV
RQIDDTRRKSEPLPQAPLSLIAENKPVVKPPVADALANPLQLTPMNSLATSVFSIAIPVDGDED
RNPSTAFYQAFHLNTFQESKSLWDSASGGGVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQI
KELVERNSLLERENALLKSLSNNDQLSQLPAQQANPGSTSQQQAMIAQPPQPTQPPQQPNVSSA

hide sequence

RefSeq Acc Id:	XP_006232448 ⟸ XM_006232386
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K4L6 (UniProtKB/TrEMBL), A6JVI5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKMPAKKKSCFQITSVTTAQVATSITEDTESLDDPDESRTEDVSSEIFDVSRATDYGPEEVCE RSSSEETLNNVGDAETPGTVSPNLILDGQLAAASAVPANGGGGVPARSVAGALSQTLAAVATSV SAPGPSSATPSQPPATCSSRFRVIKLDHGSGEPYRRGRWTCMEYYERDSDSSVLSRSGDCIRHS NTLEQTAERDSGLGATGGSVVVVVASMQGAHGLDSGTDSSLTAVSQLPPSEKMSQPTLAQPQSF SVGQPQPPPPVGGAVAPSSVSLPLFPGAATGSQPMTAATQPTQLQGAVAGGALPGPVGQGLPPP PNVNLAQPVALTAQPGPAVGSSLSQQFAYPQPPIPPGHLLPVQPSGQSEYLPPHVALQPPSPAQ PLSTSASATSASAASFPLGSGQSVSSLGAQMMGASAQPSEVVAPGPVPVGQAAPCQPAGVAPAA IGGVVQPGSGLTGVGQPQSVQPPPHMGGSVQLSAVPGGPHTVVPGVPNVPAAVPVPSVPVVPTT SVTMPNVPAPLGQSQQLSGHTPVSRSSSVIQQVGPPLAQGTHSAPTSLPQSDLSQFQTQTQSLV RQIDDTRRKSEPLPQAPLSLIAENKPVVKPPVADALANPLQLTPMNSLATSVFSIAIPVDGDED SASGGGVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELVERNSLLERENALLKSLSNND QLSQLPAQQANPGSTSQQQAMIAQPPQPTQPPQQPNVSSA hide sequence

Ensembl Acc Id:

ENSRNOP00000073091 ⟸ ENSRNOT00000088139

Ensembl Acc Id:

ENSRNOP00000062527 ⟸ ENSRNOT00000015119

Ensembl Acc Id:

ENSRNOP00000095449 ⟸ ENSRNOT00000096983

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZDW3-F1-model_v2	AlphaFold	D3ZDW3	1-768	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1593169	AgrOrtholog
BioCyc Gene	G2FUF-53003	BioCyc
Ensembl Genes	ENSRNOG00000038044	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015119	ENTREZGENE
	ENSRNOT00000015119.8	UniProtKB/TrEMBL
	ENSRNOT00000088139	ENTREZGENE
	ENSRNOT00000088139.3	UniProtKB/TrEMBL
Gene3D-CATH	Single helix bin	UniProtKB/TrEMBL
InterPro	TSC-22_Dip_Bun	UniProtKB/TrEMBL
	TSC22/BUN_CS	UniProtKB/TrEMBL
	TSC22_domain_protein_2	UniProtKB/TrEMBL
KEGG Report	rno:499624	UniProtKB/TrEMBL
NCBI Gene	499624	ENTREZGENE
PANTHER	TSC22 DOMAIN FAMILY PROTEIN 2	UniProtKB/TrEMBL
	TSC22 DOMAIN FAMILY PROTEIN 2	UniProtKB/TrEMBL
Pfam	TSC22	UniProtKB/TrEMBL
PhenoGen	Tsc22d2	PhenoGen
PROSITE	TSC22	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000038044	RatGTEx
Superfamily-SCOP	Delta-sleep-inducing peptide immunoreactive peptide	UniProtKB/TrEMBL
UniProt	A0A0G2K4L6	ENTREZGENE, UniProtKB/TrEMBL
	A6JVI5	ENTREZGENE, UniProtKB/TrEMBL
	D3ZDW3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Tsc22d2	TSC22 domain family, member 2	LOC499624	similar to TSC22 domain family protein 2 (TSC22-related-inducible leucine zipper protein 4)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC499624	similar to TSC22 domain family protein 2 (TSC22-related-inducible leucine zipper protein 4)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar