Kifbp (kinesin family binding protein) - Rat Genome Database

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Gene: Kifbp (kinesin family binding protein) Rattus norvegicus
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Symbol: Kifbp
Name: kinesin family binding protein
RGD ID: 1593126
Description: Predicted to enable kinesin binding activity and protein sequestering activity. Predicted to be involved in microtubule cytoskeleton organization; mitochondrion transport along microtubule; and plasma membrane bounded cell projection organization. Predicted to act upstream of or within in utero embryonic development. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in Goldberg-Shprintzen syndrome. Orthologous to human KIFBP (kinesin family binding protein); INTERACTS WITH acrylamide; bisphenol A; thioacetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC606294; Kbp; KIF1 binding protein; KIF1-binding protein; Kif1bp; LOC606294
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82031,055,625 - 31,075,232 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2031,055,626 - 31,075,201 (-)EnsemblGRCr8
mRatBN7.22030,512,899 - 30,532,504 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,512,901 - 30,532,476 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2031,523,860 - 31,543,427 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02030,914,767 - 30,934,334 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02031,651,619 - 31,671,149 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02032,191,731 - 32,211,295 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2032,191,734 - 32,211,453 (-)Ensemblrn6Rnor6.0
Rnor_5.02033,976,295 - 33,995,859 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42029,817,255 - 29,836,819 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2031,931,720 - 31,951,286 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16225668   PMID:20621975   PMID:27996060  


Genomics

Comparative Map Data
Kifbp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82031,055,625 - 31,075,232 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2031,055,626 - 31,075,201 (-)EnsemblGRCr8
mRatBN7.22030,512,899 - 30,532,504 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,512,901 - 30,532,476 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2031,523,860 - 31,543,427 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02030,914,767 - 30,934,334 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02031,651,619 - 31,671,149 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02032,191,731 - 32,211,295 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2032,191,734 - 32,211,453 (-)Ensemblrn6Rnor6.0
Rnor_5.02033,976,295 - 33,995,859 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42029,817,255 - 29,836,819 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2031,931,720 - 31,951,286 (-)NCBICelera
Cytogenetic Map20q11NCBI
KIFBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381068,988,803 - 69,016,982 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1068,988,803 - 69,043,544 (+)Ensemblhg38GRCh38
GRCh371070,748,559 - 70,776,738 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361070,418,499 - 70,446,744 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341070,418,585 - 70,446,740NCBI
Celera1064,024,346 - 64,052,614 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1064,750,300 - 64,778,682 (+)NCBIHuRef
CHM1_11071,030,201 - 71,058,487 (+)NCBICHM1_1
T2T-CHM13v2.01069,858,236 - 69,886,421 (+)NCBIT2T-CHM13v2.0
Kifbp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,394,249 - 62,414,846 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,374,405 - 62,414,236 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381062,558,470 - 62,579,066 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,538,626 - 62,578,457 (-)Ensemblmm10GRCm38
MGSCv371062,021,218 - 62,041,205 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361061,953,827 - 61,973,814 (-)NCBIMGSCv36mm8
Celera1063,661,836 - 63,681,935 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.43NCBI
Kifbp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543722,015,117 - 22,040,942 (-)Ensembl
ChiLan1.0NW_00495543722,015,112 - 22,040,439 (-)NCBIChiLan1.0ChiLan1.0
KIFBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2881,133,879 - 81,163,309 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11081,139,200 - 81,168,630 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01065,455,924 - 65,484,140 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11067,989,492 - 68,017,898 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1067,989,492 - 68,017,898 (+)EnsemblpanPan2panpan1.1
KIFBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,139,442 - 20,178,615 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl420,139,480 - 20,178,045 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha420,269,859 - 20,309,009 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0420,412,216 - 20,451,172 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl420,412,218 - 20,451,149 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1420,312,345 - 20,351,602 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0420,515,538 - 20,554,506 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0420,858,956 - 20,897,933 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Kifbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721360,902,765 - 60,928,341 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365219,395,465 - 9,421,629 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365219,395,490 - 9,421,093 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIFBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1472,069,395 - 72,099,211 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11472,071,879 - 72,099,800 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21478,086,513 - 78,113,856 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIFBP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1962,305,387 - 62,336,165 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl962,305,368 - 62,336,103 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604823,047,472 - 23,078,291 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kifbp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247543,209,667 - 3,234,561 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247543,209,838 - 3,234,561 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Kifbp
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11828,390,495 - 28,414,544 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Kifbp
98 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:53
Interacting mature miRNAs:61
Transcripts:ENSRNOT00000000444
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat

Markers in Region
RH128840  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22030,512,923 - 30,513,138 (+)MAPPERmRatBN7.2
Rnor_6.02032,191,755 - 32,191,969NCBIRnor6.0
Rnor_5.02033,976,319 - 33,976,533UniSTSRnor5.0
RGSC_v3.42029,817,279 - 29,817,493UniSTSRGSC3.4
Celera2031,931,744 - 31,931,958UniSTS
RH 3.4 Map20308.63UniSTS
Cytogenetic Map20q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000444   ⟹   ENSRNOP00000000444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2031,055,626 - 31,075,192 (-)Ensembl
mRatBN7.2 Ensembl2030,512,901 - 30,532,467 (-)Ensembl
Rnor_6.0 Ensembl2032,191,734 - 32,211,453 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103307   ⟹   ENSRNOP00000082090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2031,055,626 - 31,075,201 (-)Ensembl
mRatBN7.2 Ensembl2030,512,901 - 30,532,476 (-)Ensembl
RefSeq Acc Id: NM_001031627   ⟹   NP_001026797
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82031,055,625 - 31,075,192 (-)NCBI
mRatBN7.22030,512,900 - 30,532,467 (-)NCBI
Rnor_6.02032,191,731 - 32,211,295 (-)NCBI
Rnor_5.02033,976,295 - 33,995,859 (-)NCBI
RGSC_v3.42029,817,255 - 29,836,819 (-)RGD
Celera2031,931,720 - 31,951,286 (-)RGD
Sequence:
RefSeq Acc Id: XM_039099049   ⟹   XP_038954977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82031,055,625 - 31,075,232 (-)NCBI
mRatBN7.22030,512,899 - 30,532,504 (-)NCBI
RefSeq Acc Id: XM_063279488   ⟹   XP_063135558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82031,055,625 - 31,066,407 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001026797 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954977 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135558 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98692 (Get FASTA)   NCBI Sequence Viewer  
  EDL92969 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000444
  ENSRNOP00000082090
GenBank Protein Q4G074 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001026797   ⟸   NM_001031627
- UniProtKB: Q4G074 (UniProtKB/Swiss-Prot),   G3V614 (UniProtKB/TrEMBL),   A6K453 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000444   ⟸   ENSRNOT00000000444
RefSeq Acc Id: XP_038954977   ⟸   XM_039099049
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZUA6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000082090   ⟸   ENSRNOT00000103307
RefSeq Acc Id: XP_063135558   ⟸   XM_063279488
- Peptide Label: isoform X1
- UniProtKB: A6K454 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4G074-F1-model_v2 AlphaFold Q4G074 1-617 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701615
Promoter ID:EPDNEW_R12139
Type:multiple initiation site
Name:Kif1bp_1
Description:KIF1 binding protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02032,211,311 - 32,211,371EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593126 AgrOrtholog
BioCyc Gene G2FUF-3685 BioCyc
Ensembl Genes ENSRNOG00000000395 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000000444 ENTREZGENE
  ENSRNOT00000103307 ENTREZGENE
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5597959 IMAGE-MGC_LOAD
  IMAGE:7386167 IMAGE-MGC_LOAD
InterPro KBP UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:606294 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112658 IMAGE-MGC_LOAD
  MGC:72572 IMAGE-MGC_LOAD
NCBI Gene 606294 ENTREZGENE
PANTHER KIF-BINDING PROTEIN UniProtKB/Swiss-Prot
  PTHR46321 UniProtKB/Swiss-Prot
Pfam KBP_C UniProtKB/Swiss-Prot
PhenoGen Kifbp PhenoGen
RatGTEx ENSRNOG00000000395 RatGTEx
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot
UniProt A0A8I5ZUA6 ENTREZGENE, UniProtKB/TrEMBL
  A6K453 ENTREZGENE, UniProtKB/TrEMBL
  A6K454 ENTREZGENE, UniProtKB/TrEMBL
  G3V614 ENTREZGENE, UniProtKB/TrEMBL
  KBP_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-08 Kifbp  kinesin family binding protein  Kif1bp  KIF1 binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-04-17 Kif1bp  KIF1 binding protein  LOC606294  hypothetical protein LOC606294  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC606294  hypothetical protein LOC606294      Symbol and Name status set to provisional 70820 PROVISIONAL