Pcdhgb2 (protocadherin gamma subfamily B, 2) - Rat Genome Database

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Gene: Pcdhgb2 (protocadherin gamma subfamily B, 2) Rattus norvegicus
Analyze
Symbol: Pcdhgb2
Name: protocadherin gamma subfamily B, 2
RGD ID: 1592968
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC680361; similar to protocadherin gamma subfamily B, 2
Latest Assembly: GRCr8 - GRCr8 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dahl_SR_JrHsd1829,935,768 - 30,088,423 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1829,519,026 - 29,671,700 (+)NCBILyon_Normotensive
Lyon_Hypertensive1829,533,252 - 29,685,922 (+)NCBILyon_Hypertensive
F344_StmMcwi1829,625,457 - 29,778,089 (+)NCBIF344_StmMcwi
Rnor_5.01830,530,452 - 30,533,046 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41830,596,481 - 30,598,943 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1829,161,702 - 29,164,447 (+)NCBICelera
Cytogenetic Map18p11NCBI



References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: NM_001432487   ⟹   NP_001419416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd1829,935,768 - 30,088,423 (+)NCBI
Lyon_Normotensive1829,519,026 - 29,671,700 (+)NCBI
Lyon_Hypertensive1829,533,252 - 29,685,922 (+)NCBI
F344_StmMcwi1829,625,457 - 29,778,089 (+)NCBI
RefSeq Acc Id: XM_002725317   ⟹   XP_002725363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1829,161,702 - 29,164,447 (+)NCBI
RefSeq Acc Id: XM_574133   ⟹   XP_574133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.41830,596,481 - 30,598,943 (+)RGD
RefSeq Acc Id: XR_361321
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01830,530,452 - 30,533,046 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001419416 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_002725363   ⟸   XM_002725317
RefSeq Acc Id: XP_574133   ⟸   XM_574133
RefSeq Acc Id: NP_001419416   ⟸   NM_001432487
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
  Cadherin_CBD UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_N UniProtKB/TrEMBL
  Protocadherin/Cadherin-CA UniProtKB/TrEMBL
NCBI Gene 680361 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  PROTOCADHERIN GAMMA-B2 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/TrEMBL
  Cadherin_C_2 UniProtKB/TrEMBL
  Cadherin_tail UniProtKB/TrEMBL
PhenoGen Pcdhgb2 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin-like UniProtKB/TrEMBL
UniProt A6J391 ENTREZGENE, UniProtKB/TrEMBL
  A6J392 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-07-30 Pcdhgb2  protocadherin gamma subfamily B, 2  Pcdhgb2  protocadherin gamma subfamily B, 2  Type changed (type changed from [pseudo] to [protein-coding]) 629549 APPROVED
2008-03-05 Pcdhgb2  protocadherin gamma subfamily B, 2  LOC680361  similar to protocadherin gamma subfamily B, 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680361  similar to protocadherin gamma subfamily B, 2      Symbol and Name status set to provisional 70820 PROVISIONAL