Fam162a (family with sequence similarity 162, member A) - Rat Genome Database

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Gene: Fam162a (family with sequence similarity 162, member A) Rattus norvegicus
Analyze
Symbol: Fam162a
Name: family with sequence similarity 162, member A
RGD ID: 1590883
Description: Predicted to be involved in several processes, including cellular response to hypoxia; neuron apoptotic process; and positive regulation of release of cytochrome c from mitochondria. Predicted to be located in mitochondrial membrane. Predicted to be active in mitochondrion. Orthologous to human FAM162A (family with sequence similarity 162 member A); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2-nitrofluorene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E2-induced gene 5 protein homolog; growth and transformation-dependent protein; LOC360721; MGC116101
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81178,186,260 - 78,215,186 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1178,185,852 - 78,216,560 (+)EnsemblGRCr8
mRatBN7.21164,680,978 - 64,709,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,680,323 - 64,711,239 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1173,505,954 - 73,535,213 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01166,168,216 - 66,197,475 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01165,199,464 - 65,228,723 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,618,683 - 67,646,253 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,618,625 - 67,646,253 (+)Ensemblrn6Rnor6.0
Rnor_5.01170,706,160 - 70,733,730 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41166,518,103 - 66,546,302 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1164,149,247 - 64,177,230 (+)NCBICelera
Cytogenetic Map11q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
aconitine  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
cadmium dichloride  (ISO)
capsaicin  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chloroacetaldehyde  (ISO)
chromium(6+)  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
corosolic acid  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
fipronil  (EXP)
fluoranthene  (ISO)
folic acid  (ISO)
furan  (EXP)
furfural  (ISO)
glyphosate  (ISO)
GSK-J4  (ISO)
hydralazine  (ISO)
ifosfamide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
Mesaconitine  (EXP)
methapyrilene  (EXP)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
motexafin gadolinium  (ISO)
Muraglitazar  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (EXP)
N-nitrosomorpholine  (EXP)
nickel sulfate  (ISO)
nitrofen  (EXP)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
succimer  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
Tesaglitazar  (EXP)
testosterone enanthate  (ISO)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
tolcapone  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc acetate  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Proapoptotic role of human growth and transformation-dependent protein in the developing rat brain after hypoxia-ischemia. Qu Y, etal., Stroke. 2009 Aug;40(8):2843-8. doi: 10.1161/STROKEAHA.109.553644. Epub 2009 Jun 11.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:3040268   PMID:12477932   PMID:15082785   PMID:15489334   PMID:17316997   PMID:18614015   PMID:21700703   PMID:23376485  


Genomics

Comparative Map Data
Fam162a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81178,186,260 - 78,215,186 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1178,185,852 - 78,216,560 (+)EnsemblGRCr8
mRatBN7.21164,680,978 - 64,709,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,680,323 - 64,711,239 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1173,505,954 - 73,535,213 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01166,168,216 - 66,197,475 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01165,199,464 - 65,228,723 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,618,683 - 67,646,253 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,618,625 - 67,646,253 (+)Ensemblrn6Rnor6.0
Rnor_5.01170,706,160 - 70,733,730 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41166,518,103 - 66,546,302 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1164,149,247 - 64,177,230 (+)NCBICelera
Cytogenetic Map11q22NCBI
FAM162A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383122,384,182 - 122,412,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3122,384,161 - 122,412,334 (+)Ensemblhg38GRCh38
GRCh373122,103,029 - 122,131,181 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363123,585,713 - 123,611,651 (+)NCBIBuild 36Build 36hg18NCBI36
Celera3120,512,651 - 120,538,589 (+)NCBICelera
Cytogenetic Map3q21.1NCBI
HuRef3119,476,342 - 119,502,272 (+)NCBIHuRef
CHM1_13122,066,508 - 122,092,446 (+)NCBICHM1_1
T2T-CHM13v2.03125,103,734 - 125,131,889 (+)NCBIT2T-CHM13v2.0
Fam162a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391635,864,214 - 35,891,931 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1635,864,131 - 35,891,964 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381636,043,844 - 36,071,561 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1636,043,761 - 36,071,594 (-)Ensemblmm10GRCm38
MGSCv371636,043,930 - 36,071,601 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361635,963,591 - 35,991,262 (-)NCBIMGSCv36mm8
Celera1636,524,452 - 36,554,817 (-)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1625.43NCBI
Fam162a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542721,667,922 - 21,694,844 (+)Ensembl
ChiLan1.0NW_00495542721,668,180 - 21,695,004 (+)NCBIChiLan1.0ChiLan1.0
FAM162A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22120,329,509 - 120,357,927 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13120,334,289 - 120,362,707 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03119,474,737 - 119,500,668 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13126,380,525 - 126,406,366 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3126,380,525 - 126,406,366 (+)EnsemblpanPan2panpan1.1
FAM162A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13325,525,408 - 25,552,272 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3325,525,411 - 25,552,256 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3325,549,956 - 25,576,605 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03325,760,885 - 25,788,402 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3325,760,897 - 25,787,353 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13325,557,937 - 25,584,375 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03325,600,850 - 25,627,522 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03326,158,788 - 26,186,295 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam162a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602128,796,339 - 128,824,407 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,697,595 - 8,730,329 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,697,631 - 8,725,667 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM162A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13138,115,509 - 138,151,738 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113138,115,499 - 138,151,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213147,726,442 - 147,762,654 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM162A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12258,451,115 - 58,476,960 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2258,449,189 - 58,476,959 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041107,865,631 - 107,891,438 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam162a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624912739,917 - 762,939 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624912739,804 - 763,149 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam162a
215 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:168
Interacting mature miRNAs:181
Transcripts:ENSRNOT00000041844, ENSRNOT00000043230
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat

Markers in Region
AW531837  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21164,708,013 - 64,708,205 (+)MAPPERmRatBN7.2
Rnor_6.01167,643,029 - 67,643,220NCBIRnor6.0
Rnor_5.01170,730,506 - 70,730,697UniSTSRnor5.0
RGSC_v3.41166,543,078 - 66,543,269UniSTSRGSC3.4
Celera1164,174,006 - 64,174,197UniSTS
RH 3.4 Map11485.5UniSTS
Cytogenetic Map11q22UniSTS
RH139177  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81178,185,475 - 78,186,000 (+)Marker Load Pipeline
mRatBN7.21164,680,152 - 64,680,677 (+)MAPPERmRatBN7.2
Rnor_6.01167,617,857 - 67,618,381NCBIRnor6.0
Rnor_5.01170,705,334 - 70,705,858UniSTSRnor5.0
RGSC_v3.41166,517,220 - 66,517,744UniSTSRGSC3.4
Celera1164,148,364 - 64,148,888UniSTS
RH 3.4 Map11485.4UniSTS
Cytogenetic Map11q22UniSTS
BI283380  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2886,746,135 - 86,746,330 (+)MAPPERmRatBN7.2
Rnor_6.0893,443,727 - 93,443,921NCBIRnor6.0
Rnor_5.0892,958,508 - 92,958,702UniSTSRnor5.0
RGSC_v3.4891,028,145 - 91,028,339UniSTSRGSC3.4
Celera886,358,798 - 86,358,992UniSTS
RH 3.4 Map8988.6UniSTS
Cytogenetic Map8q31UniSTS
Cytogenetic Map11q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000041844   ⟹   ENSRNOP00000040367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1178,185,852 - 78,216,560 (+)Ensembl
mRatBN7.2 Ensembl1164,680,978 - 64,711,239 (+)Ensembl
Rnor_6.0 Ensembl1167,618,740 - 67,646,253 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000043230   ⟹   ENSRNOP00000040848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1178,202,222 - 78,215,186 (+)Ensembl
mRatBN7.2 Ensembl1164,696,900 - 64,709,863 (+)Ensembl
Rnor_6.0 Ensembl1167,618,706 - 67,644,742 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087054   ⟹   ENSRNOP00000070028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1178,185,852 - 78,212,853 (+)Ensembl
mRatBN7.2 Ensembl1164,680,978 - 64,707,531 (+)Ensembl
Rnor_6.0 Ensembl1167,618,625 - 67,643,233 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099640   ⟹   ENSRNOP00000096204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1178,185,852 - 78,215,177 (+)Ensembl
mRatBN7.2 Ensembl1164,680,323 - 64,709,863 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116350   ⟹   ENSRNOP00000081032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1178,185,852 - 78,213,549 (+)Ensembl
mRatBN7.2 Ensembl1164,680,978 - 64,707,809 (+)Ensembl
RefSeq Acc Id: NM_001399276   ⟹   NP_001386205
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,186,301 - 78,215,186 (+)NCBI
mRatBN7.21164,680,978 - 64,709,865 (+)NCBI
RefSeq Acc Id: XM_063270641   ⟹   XP_063126711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,186,260 - 78,215,186 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001386205 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126711 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42232 (Get FASTA)   NCBI Sequence Viewer  
  AAH97971 (Get FASTA)   NCBI Sequence Viewer  
  EDM11295 (Get FASTA)   NCBI Sequence Viewer  
  EDM11296 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000081032
  ENSRNOP00000096204
GenBank Protein Q4QQV3 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000040848   ⟸   ENSRNOT00000043230
Ensembl Acc Id: ENSRNOP00000070028   ⟸   ENSRNOT00000087054
Ensembl Acc Id: ENSRNOP00000040367   ⟸   ENSRNOT00000041844
Ensembl Acc Id: ENSRNOP00000081032   ⟸   ENSRNOT00000116350
Ensembl Acc Id: ENSRNOP00000096204   ⟸   ENSRNOT00000099640
RefSeq Acc Id: NP_001386205   ⟸   NM_001399276
- UniProtKB: Q4QQV3 (UniProtKB/Swiss-Prot),   A6IRE2 (UniProtKB/TrEMBL),   A0A8I6AP17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126711   ⟸   XM_063270641
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZR27 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4QQV3-F1-model_v2 AlphaFold Q4QQV3 1-155 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698192
Promoter ID:EPDNEW_R8710
Type:initiation region
Name:Fam162a_1
Description:family with sequence similarity 162, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01167,618,709 - 67,618,769EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590883 AgrOrtholog
BioCyc Gene G2FUF-21211 BioCyc
Ensembl Genes ENSRNOG00000002255 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000099640 ENTREZGENE
  ENSRNOT00000116350 ENTREZGENE
IMAGE_CLONE IMAGE:7442058 IMAGE-MGC_LOAD
InterPro DUF1075 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116101 IMAGE-MGC_LOAD
NCBI Gene 360721 ENTREZGENE
PANTHER PROTEIN FAM162A UniProtKB/Swiss-Prot
  PTHR13674 UniProtKB/Swiss-Prot
Pfam DUF1075 UniProtKB/Swiss-Prot
PhenoGen Fam162a PhenoGen
RatGTEx ENSRNOG00000002255 RatGTEx
UniProt A0A0G2JWV2_RAT UniProtKB/TrEMBL
  A0A8I5ZR27 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AP17 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QLE0_RAT UniProtKB/TrEMBL
  A6IRE2 ENTREZGENE, UniProtKB/TrEMBL
  D4ADP1_RAT UniProtKB/TrEMBL
  F162A_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Fam162a  family with sequence similarity 162, member A  LOC60380  growth and transformation-dependent protein  Data merged from RGD:708396 1643240 APPROVED
2008-10-23 Fam162a  family with sequence similarity 162, member A  LOC360721  growth and transformation-dependent protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC360721  growth and transformation-dependent protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-10-12 LOC60380        Symbol and Name status set to provisional 70820 PROVISIONAL