Nrsn2 (neurensin 2) - Rat Genome Database

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Gene: Nrsn2 (neurensin 2) Rattus norvegicus
Analyze
Symbol: Nrsn2
Name: neurensin 2
RGD ID: 1586322
Description: Predicted to be involved in nervous system development. Predicted to be located in cytoplasmic vesicle. Predicted to be active in neuron projection; neuronal cell body; and transport vesicle. Orthologous to human NRSN2 (neurensin 2); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC689978; LOC689978; neurensin-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,299,116 - 161,307,947 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.23140,838,813 - 140,847,291 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,838,814 - 140,847,297 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3144,743,971 - 144,752,464 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,327,816 - 153,336,310 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,067,881 - 151,076,237 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,843,077 - 147,856,473 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,843,077 - 147,851,768 (-)Ensemblrn6Rnor6.0
Rnor_5.03154,190,943 - 154,199,634 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43142,692,988 - 142,702,131 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3139,590,410 - 139,598,937 (-)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16527258  


Genomics

Comparative Map Data
Nrsn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,299,116 - 161,307,947 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.23140,838,813 - 140,847,291 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,838,814 - 140,847,297 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3144,743,971 - 144,752,464 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,327,816 - 153,336,310 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,067,881 - 151,076,237 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,843,077 - 147,856,473 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,843,077 - 147,851,768 (-)Ensemblrn6Rnor6.0
Rnor_5.03154,190,943 - 154,199,634 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43142,692,988 - 142,702,131 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3139,590,410 - 139,598,937 (-)NCBICelera
Cytogenetic Map3q41NCBI
NRSN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3820347,111 - 354,862 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl20346,705 - 359,660 (+)Ensemblhg38GRCh38
GRCh3720327,755 - 335,506 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3620275,775 - 283,505 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3420277,892 - 283,506NCBI
Celera20422,220 - 430,358 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef20278,975 - 287,113 (+)NCBIHuRef
CHM1_120327,343 - 335,486 (+)NCBICHM1_1
T2T-CHM13v2.020390,459 - 398,227 (+)NCBIT2T-CHM13v2.0
Nrsn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,210,675 - 152,218,560 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,210,675 - 152,218,558 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382152,368,755 - 152,376,625 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,368,755 - 152,376,638 (-)Ensemblmm10GRCm38
MGSCv372152,194,494 - 152,202,302 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362152,060,199 - 152,068,007 (-)NCBIMGSCv36mm8
Celera2158,182,828 - 158,190,641 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.89NCBI
Nrsn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955597236,467 - 245,480 (+)Ensembl
ChiLan1.0NW_004955597236,247 - 241,754 (+)NCBIChiLan1.0ChiLan1.0
NRSN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,435,899 - 1,444,076 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1201,432,728 - 1,440,903 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v020555,825 - 563,819 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.120326,347 - 333,948 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20326,879 - 338,410 (+)EnsemblpanPan2panpan1.1
NRSN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,492,095 - 20,504,827 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2420,493,351 - 20,496,083 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2420,145,750 - 20,158,459 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02421,185,048 - 21,197,757 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,185,052 - 21,197,722 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,460,571 - 20,473,283 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,566,525 - 20,579,235 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02420,997,088 - 21,009,797 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nrsn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640169,672,718 - 169,679,003 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648518,103,931 - 18,110,809 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648518,104,082 - 18,110,321 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRSN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1734,838,077 - 34,844,498 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11734,838,076 - 34,844,505 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,619,040 - 39,625,462 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NRSN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1235,479,290 - 35,486,362 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl235,479,347 - 35,487,012 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660787,652,528 - 7,660,184 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nrsn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247411,450,440 - 1,452,947 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247411,448,022 - 1,453,930 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nrsn2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15131,691,662 - 131,699,887 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nrsn2
47 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:169
Count of miRNA genes:124
Interacting mature miRNAs:138
Transcripts:ENSRNOT00000032881
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3141508991166376254Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3160357340167835660Rat

Markers in Region
RH132203  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23140,838,969 - 140,839,171 (+)MAPPERmRatBN7.2
Rnor_6.03147,843,234 - 147,843,435NCBIRnor6.0
Rnor_5.03154,191,100 - 154,191,301UniSTSRnor5.0
RGSC_v3.43142,693,145 - 142,693,346UniSTSRGSC3.4
Celera3139,590,567 - 139,590,768UniSTS
RH 3.4 Map31271.3UniSTS
Cytogenetic Map3q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 4 52 135 46 45 21 19 21 6 179 92 1 118 53 83 24 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000032881   ⟹   ENSRNOP00000038167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3161,298,764 - 161,323,940 (-)Ensembl
mRatBN7.2 Ensembl3140,838,814 - 140,847,297 (-)Ensembl
Rnor_6.0 Ensembl3147,843,077 - 147,851,768 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000081153   ⟹   ENSRNOP00000068560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3147,843,086 - 147,849,875 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000160791   ⟹   ENSRNOP00000109579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3161,298,765 - 161,326,428 (-)Ensembl
RefSeq Acc Id: NM_001109561   ⟹   NP_001103031
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83161,299,116 - 161,307,593 (-)NCBI
mRatBN7.23140,838,813 - 140,847,291 (-)NCBI
Rnor_6.03147,843,077 - 147,851,768 (-)NCBI
Rnor_5.03154,190,943 - 154,199,634 (-)NCBI
RGSC_v3.43142,692,988 - 142,702,131 (-)RGD
Celera3139,590,410 - 139,598,937 (-)RGD
Sequence:
RefSeq Acc Id: XM_063284579   ⟹   XP_063140649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83161,299,116 - 161,307,947 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001103031 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140649 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI59408 (Get FASTA)   NCBI Sequence Viewer  
  EDL86073 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038167.5
  ENSRNOP00000109579.1
RefSeq Acc Id: NP_001103031   ⟸   NM_001109561
- UniProtKB: B0K009 (UniProtKB/TrEMBL),   A6KHN2 (UniProtKB/TrEMBL),   F7F9Q0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038167   ⟸   ENSRNOT00000032881
Ensembl Acc Id: ENSRNOP00000068560   ⟸   ENSRNOT00000081153
RefSeq Acc Id: XP_063140649   ⟸   XM_063284579
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000109579   ⟸   ENSRNOT00000160791

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0K009-F1-model_v2 AlphaFold B0K009 1-201 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1586322 AgrOrtholog
BioCyc Gene G2FUF-47273 BioCyc
Ensembl Genes ENSRNOG00000023935 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032881.8 UniProtKB/TrEMBL
  ENSRNOT00000160791.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8362039 IMAGE-MGC_LOAD
InterPro Neurensin UniProtKB/TrEMBL
KEGG Report rno:689978 UniProtKB/TrEMBL
MGC_CLONE MGC:188674 IMAGE-MGC_LOAD
NCBI Gene 689978 ENTREZGENE
PANTHER PTHR14796 UniProtKB/TrEMBL
  PTHR14796:SF5 UniProtKB/TrEMBL
Pfam Neurensin UniProtKB/TrEMBL
PhenoGen Nrsn2 PhenoGen
RatGTEx ENSRNOG00000023935 RatGTEx
UniProt A0ABZ3NNL1_RAT UniProtKB/TrEMBL
  A6KHN2 ENTREZGENE, UniProtKB/TrEMBL
  B0K009 ENTREZGENE
  F7F9Q0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B0K009 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Nrsn2  neurensin 2  LOC689978  hypothetical protein LOC689978  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC689978  hypothetical protein LOC689978  LOC682453  hypothetical protein LOC682453  Data merged from RGD:1583439 1643240 APPROVED
2006-11-19 LOC689978  hypothetical protein LOC689978      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682453  hypothetical protein LOC682453      Symbol and Name status set to provisional 70820 PROVISIONAL