Advanced Search (OLGA)

Gene: Pard3b (par-3 family cell polarity regulator beta) Rattus norvegicus

Analyze

Symbol:

Pard3b

Name:

par-3 family cell polarity regulator beta

RGD ID:

1584992

Description:

Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in several processes, including establishment of cell polarity; establishment of centrosome localization; and establishment or maintenance of epithelial cell apical/basal polarity. Predicted to be located in bicellular tight junction; endomembrane system; and membrane. Predicted to be part of protein-containing complex. Predicted to be active in several cellular components, including adherens junction; apical junction complex; and apical plasma membrane. Orthologous to human PARD3B (par-3 family cell polarity regulator beta); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC301455; par-3 partitioning defective 3 homolog B; par-3 partitioning defective 3 homolog B (C. elegans); partitioning defective 3 homolog B; similar to amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 isoform b

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PARD3B (par-3 family cell polarity regulator beta)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pard3b (par-3 family cell polarity regulator beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pard3b (par-3 family cell polarity regulator beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PARD3B (par-3 family cell polarity regulator beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PARD3B (par-3 family cell polarity regulator beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pard3b (par-3 family cell polarity regulator beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PARD3B (par-3 family cell polarity regulator beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PARD3B (par-3 family cell polarity regulator beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pard3b (par-3 family cell polarity regulator beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pard3b (par-3 family cell polarity regulator beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PRR33 (proline rich 33)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PARD3B (par-3 family cell polarity regulator beta)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PARD3B (par-3 family cell polarity regulator beta)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Pard3b (par-3 family cell polarity regulator beta)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Pard3b (par-3 family cell polarity regulator beta)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pard3bb (par-3 family cell polarity regulator beta b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pard3ba (par-3 family cell polarity regulator beta a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	pard3ba (par-3 family cell polarity regulator beta a)	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	par-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	par-3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	baz	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	baz	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pard3b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pard3b	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	70,532,358 - 71,561,044 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	70,532,644 - 71,560,554 (+)	Ensembl				GRCr8
mRatBN7.2	9	63,038,435 - 64,067,178 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	63,038,436 - 64,068,053 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	71,539,470 - 72,550,870 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	76,650,917 - 77,674,373 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	74,967,233 - 75,984,014 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	68,414,339 - 69,426,226 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	68,414,339 - 69,426,226 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	68,228,908 - 69,236,542 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	60,249,099 - 61,275,947 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	60,461,625 - 61,470,971 (+)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Neurodevelopmental Disorders (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aflatoxin M1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

cisplatin (ISO)

DDE (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

methapyrilene (ISO)

methotrexate (ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (EXP)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

niclosamide (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

paracetamol (EXP)

permethrin (EXP)

phenobarbital (ISO)

potassium dichromate (ISO)

S-nitrosoglutathione (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

Triptolide (ISO)

urethane (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IBA)

cell division (IEA)

establishment of cell polarity (IBA)

establishment or maintenance of epithelial cell apical/basal polarity (IBA)

intracellular protein localization (IBA)

microtubule cytoskeleton organization (IBA)

Cellular Component

adherens junction (IBA)

apical junction complex (IBA)

apical plasma membrane (IBA)

bicellular tight junction (IEA)

cell cortex (IBA)

cell junction (IEA,ISO)

endomembrane system (IEA)

protein-containing complex (ISO)

Molecular Function

phosphatidylinositol binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16458856

Genomics

Comparative Map Data

Pard3b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	70,532,358 - 71,561,044 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	70,532,644 - 71,560,554 (+)	Ensembl				GRCr8
mRatBN7.2	9	63,038,435 - 64,067,178 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	63,038,436 - 64,068,053 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	71,539,470 - 72,550,870 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	76,650,917 - 77,674,373 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	74,967,233 - 75,984,014 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	68,414,339 - 69,426,226 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	68,414,339 - 69,426,226 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	68,228,908 - 69,236,542 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	60,249,099 - 61,275,947 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	60,461,625 - 61,470,971 (+)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI

PARD3B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	204,545,475 - 205,620,162 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	204,545,475 - 205,620,162 (+)	Ensembl			hg38	GRCh38
GRCh37	2	205,410,198 - 206,484,886 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	205,118,761 - 206,188,782 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	205,236,021 - 206,306,043	NCBI
Celera	2	199,165,594 - 200,238,308 (+)	NCBI		Celera
Cytogenetic Map	2	q33.3	NCBI
HuRef	2	197,257,381 - 198,332,869 (+)	NCBI		HuRef
CHM1_1	2	205,417,249 - 206,491,622 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	205,027,774 - 206,102,476 (+)	NCBI		T2T-CHM13v2.0

Pard3b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	61,677,825 - 62,681,443 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	61,677,983 - 62,681,443 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	61,638,667 - 62,642,284 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	61,638,824 - 62,642,284 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	61,685,398 - 62,688,858 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	61,573,162 - 62,572,199 (+)	NCBI		MGSCv36	mm8
Celera	1	62,153,615 - 63,159,641 (+)	NCBI		Celera
Cytogenetic Map	1	C2	NCBI
cM Map	1	30.92	NCBI

Pard3b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	9,372,267 - 10,232,271 (-)	Ensembl
ChiLan1.0	NW_004955457	9,367,942 - 10,232,855 (-)	NCBI	ChiLan1.0	ChiLan1.0

PARD3B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	107,146,918 - 108,221,864 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	107,162,377 - 108,236,842 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	91,774,815 - 92,848,957 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	209,914,990 - 210,979,752 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	210,056,697 - 210,975,405 (+)	Ensembl			panPan2	panpan1.1

PARD3B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	13,251,965 - 14,233,893 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	13,251,881 - 14,230,765 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	14,134,152 - 15,113,090 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	13,189,579 - 14,171,818 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	13,189,667 - 14,169,018 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	13,145,434 - 14,125,051 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	13,110,067 - 14,097,886 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	13,111,043 - 14,091,924 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pard3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	161,443,896 - 162,423,486 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936631	1,079,478 - 2,054,258 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936631	1,079,002 - 2,058,494 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PARD3B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	107,882,832 - 108,910,662 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	107,882,457 - 108,913,487 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	120,243,187 - 120,501,315 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PARD3B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	90,313,506 - 91,394,090 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	90,857,460 - 91,389,718 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	107,984,235 - 109,079,732 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pard3b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	10,548,067 - 11,214,095 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624765	10,543,734 - 11,627,811 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pard3b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	135,664,792 - 136,651,677 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pard3b
7019 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	78
Count of miRNA genes:	67
Interacting mature miRNAs:	71
Transcripts:	ENSRNOT00000040778
Prediction methods:	Microtar, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	57460497	78547958	Rat
1578659	Tspe1	Trichinella spiralis expulsion QTL 1	4.8		parasite quantity (VT:0010441)	logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)	9	68875497	73185088	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat

Markers in Region

D9Rat117

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	9	70,963,466 - 70,963,623 (+)	Marker Load Pipeline
mRatBN7.2	9	63,469,569 - 63,469,726 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	68,839,966 - 68,840,122	NCBI	Rnor6.0
Rnor_5.0	9	68,653,891 - 68,654,047	UniSTS	Rnor5.0
RGSC_v3.4	8	38,948,694 - 38,948,850	UniSTS	RGSC3.4
RGSC_v3.4	9	60,685,216 - 60,685,372	UniSTS	RGSC3.4
Celera	9	60,891,901 - 60,892,057	UniSTS
RGSC_v3.1	9	60,832,060 - 60,832,457	RGD
SHRSP x BN Map	9	44.3798	UniSTS
SHRSP x BN Map	9	44.3798	RGD
Cytogenetic Map	9	q31	UniSTS

D9Got67

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	63,241,399 - 63,241,622 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	68,614,236 - 68,614,458	NCBI	Rnor6.0
Rnor_5.0	9	68,428,805 - 68,429,027	UniSTS	Rnor5.0
RGSC_v3.4	9	60,451,498 - 60,451,721	RGD	RGSC3.4
RGSC_v3.4	9	60,451,499 - 60,451,721	UniSTS	RGSC3.4
Celera	9	60,664,152 - 60,664,374	UniSTS
RGSC_v3.1	9	60,598,481 - 60,598,703	RGD
RH 3.4 Map	9	515.2	UniSTS
RH 3.4 Map	9	515.2	RGD
RH 2.0 Map	9	584.6	RGD
Cytogenetic Map	9	q31	UniSTS

D9Got66

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	63,132,261 - 63,132,460 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	68,506,846 - 68,507,044	NCBI	Rnor6.0
Rnor_5.0	9	68,321,415 - 68,321,613	UniSTS	Rnor5.0
RGSC_v3.4	9	60,342,360 - 60,342,559	RGD	RGSC3.4
RGSC_v3.4	9	60,342,361 - 60,342,559	UniSTS	RGSC3.4
Celera	9	60,555,074 - 60,555,272	UniSTS
RGSC_v3.1	9	60,489,342 - 60,489,541	RGD
RH 2.0 Map	9	587.6	RGD
Cytogenetic Map	9	q31	UniSTS

RH133643

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	63,095,976 - 63,096,174 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	68,470,561 - 68,470,758	NCBI	Rnor6.0
Rnor_5.0	9	68,285,130 - 68,285,327	UniSTS	Rnor5.0
RGSC_v3.4	9	60,306,076 - 60,306,273	UniSTS	RGSC3.4
Celera	9	60,518,789 - 60,518,986	UniSTS
RH 3.4 Map	9	515.1	UniSTS
Cytogenetic Map	9	q31	UniSTS

RH144246

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	63,295,202 - 63,295,352 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	68,668,043 - 68,668,192	NCBI	Rnor6.0
Rnor_5.0	9	68,482,585 - 68,482,734	UniSTS	Rnor5.0
RGSC_v3.4	9	60,508,371 - 60,508,520	UniSTS	RGSC3.4
Celera	9	60,718,192 - 60,718,341	UniSTS
RH 3.4 Map	9	515.1	UniSTS
Cytogenetic Map	9	q31	UniSTS

BE120687

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	63,801,673 - 63,801,845 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	69,173,469 - 69,173,640	NCBI	Rnor6.0
Rnor_5.0	9	68,984,876 - 68,985,047	UniSTS	Rnor5.0
RGSC_v3.4	9	61,023,609 - 61,023,780	UniSTS	RGSC3.4
Celera	9	61,221,809 - 61,221,980	UniSTS
RH 3.4 Map	9	518.8	UniSTS
Cytogenetic Map	9	q31	UniSTS

AU047327

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	63,333,231 - 63,333,373 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	68,706,633 - 68,706,774	NCBI	Rnor6.0
Rnor_5.0	9	68,521,175 - 68,521,316	UniSTS	Rnor5.0
RGSC_v3.4	9	60,546,007 - 60,546,148	UniSTS	RGSC3.4
Celera	9	60,756,221 - 60,756,364	UniSTS
Cytogenetic Map	9	q31	UniSTS

MARC_21133-21134:1025201105:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	63,757,444 - 63,758,385 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	69,129,240 - 69,130,180	NCBI	Rnor6.0
Rnor_5.0	9	68,940,647 - 68,941,587	UniSTS	Rnor5.0
RGSC_v3.4	9	60,979,380 - 60,980,320	UniSTS	RGSC3.4
Celera	9	61,177,581 - 61,178,521	UniSTS
Cytogenetic Map	9	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	84	59	6	348	184	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000040778 ⟹ ENSRNOP00000039831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	70,763,780 - 71,560,554 (+)	Ensembl
mRatBN7.2 Ensembl	9	63,038,691 - 64,068,053 (+)	Ensembl
Rnor_6.0 Ensembl	9	68,414,339 - 69,426,226 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093936 ⟹ ENSRNOP00000080352

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	70,633,296 - 71,550,346 (+)	Ensembl
mRatBN7.2 Ensembl	9	63,038,436 - 64,055,445 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100701 ⟹ ENSRNOP00000087764

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	70,532,710 - 71,550,346 (+)	Ensembl
mRatBN7.2 Ensembl	9	63,038,436 - 64,055,445 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101906 ⟹ ENSRNOP00000093250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	70,532,644 - 71,550,346 (+)	Ensembl
mRatBN7.2 Ensembl	9	63,038,436 - 64,055,445 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104505 ⟹ ENSRNOP00000091023

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	70,916,691 - 71,550,346 (+)	Ensembl
mRatBN7.2 Ensembl	9	63,422,794 - 64,055,445 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137956 ⟹ ENSRNOP00000103385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	70,532,710 - 71,550,346 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000138401 ⟹ ENSRNOP00000109415

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	70,532,710 - 71,550,346 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139132 ⟹ ENSRNOP00000107481

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	70,627,632 - 71,550,346 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000157095 ⟹ ENSRNOP00000098764

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	70,725,002 - 71,550,346 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161308 ⟹ ENSRNOP00000107549

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	70,892,029 - 71,550,346 (+)	Ensembl

RefSeq Acc Id:

NM_001191808 ⟹ NP_001178737

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	70,532,495 - 71,550,346 (+)	NCBI
mRatBN7.2	9	63,038,591 - 64,056,467 (+)	NCBI
Rnor_6.0	9	68,414,339 - 69,426,226 (+)	NCBI
Rnor_5.0	9	68,228,908 - 69,236,542 (+)	NCBI
Celera	9	60,461,625 - 61,470,971 (+)	NCBI

Sequence:

show sequence

ATGAAAGTGACAGTGTGCTTCGGGAGGACCGGCATCGTGGTGCCCTGCAAGGACGGCCAGCTGC
GCGTCAGCGAGCTCACCCAGCAGGCGCTGCAGCGGTACCTGAAGACCCGGGACCAGGATCCTGG
ATACTGGGTGAAGATTCATCACTTGGAATACACAGATGGAGGAATCCTGGATCCAGATGATGTC
TTAGCAGATGTCGTTGAAGATAAAGATAAGCTGATTGCTGTGTTTGACGAACAAGAGCCACTCC
AAAAGATTGAGAGCCCCAGTGGAAACCCTGTGGATCGGCAGAGCCCAGATGCTTTCGACACAGA
AGTGGCTGCCCAACTGGCTGCGTTTAAACCAATCGGCGGGGAAATTGTAGTAACCCCTTCTGCT
CTGAAGTTAGGCACTCCGCTGCTGGTTAGGAGAAGCAGTGACCCAGCACCAGGGCCCCATGCTG
ATGCCCAGCCAAGCACTGCAAGCCCCAGTGGCCAGAGCTTGAAACCTGTTGTTCTGGATTCTGC
CCAGAACTTGGAAAACAGAGACGTTATGAATGGTGAACAGACAGGGCTACTTATGCTGCACAAA
ACGAAGAATGAACTGAGTGATATGACGAGAGCTGTGGAGATTTCTGGGGAAGGAGATCCCTTGG
GGATACATGTGGTGCCCTTCTTTTCATCCCTGAGTGGCAGGATCCTAGGACTCTTCATCCGAGG
CATCGAAGAAAACAGCAGGTGCAAGCAGGAGGGACTATTTCAGGAAAACGAATGCATTGTAAAA
ATCAACAACGTGGAACTCCTGGACAAAACTTTTGCTCAGGCCCAAGATGTCTTCCGTCAGGCAA
TGAAATCTCCCAGTGTGGTCCTCCATGTGCTTCTGCCTCAAAATCGTGAACAATATGAAAAATC
AGTCATTGGACAACTGAACATTTTTGGCAACAATGACAGTGCTTCAAGAACAAAGGCACCACCT
CCCACCCGTGGGAAAGCAGGGCTAAAGGCAGTAAATCCAACAAGAGCAAACAGCCCTGAAGGAG
AGGAGTCACCTTCCCCGCAGCAAAGCAAGAGTCCCCGAGTTCCAAGATTAGGAAGAAAACCTTC
CTCTCCCTCACTCTCCCCTCTCATGGGGTTTGGCAGCAAGAAAAATGCAAAAAAAATTAAGATT
GACCTTAAGAAAGGCCCCGAAGGACTTGGTTTCACTGTGGTAACTAGAGATTCTTCTATACATG
GTCCTGGTCCCATTTTTGTAAAAAATATCCTACCAAAGGGAGCAGCAGTAAAGGATGGCCGCCT
ACAATCAGGAGACAGAATTTTAGAGGTAAATGGCAGAGATGTCACAGGAAGAACCCAGGAAGAA
CTTGTGGCCATGCTGAGGAGCACTAAGCAGGGAGAGACGGTATCACTGGTCATTGCCCGCCAAG
AAGGGAGCTTCCTGCCCCGAGAGCTGAAAGGAGAACCTGATTGCTATGCACTCTCCCTGGAATC
AAGCGAGCAGCTCACCTTGGAGATCCCCCTGAATGATTCCGGCTCTGCTGGTCTTGGAGTTAGC
CTGAAAGGGAATAAATCTCGAGAAACTGGGACTGACTTGGGGATTTTTATCAAATCCATCATCC
ATGGAGGTGCTGCTTTCAAGGATGGCCGTCTCCGAATGAATGACCAACTGATTGCTGTTAATGG
GGAAACTCTTCTGGGAAAGTCCAACCATGAAGCCATGGAAACACTGAGGAGATCCATGTCCATG
GAAGGAAACATCCGGGGCATGATCCAGTTAGTGATTCTGAGGAGACTGGAGAGACCACTGGAGG
AGATTTCAGAATGTGGAGCACTTTCCAGACCATGCTTTGAGAACTGTCAAGAAGCTCTGAGCGC
CTCCAGGCGAAATGATAGTAGTTTATTATATCCGTGTGGCACCTATAGTCCACAAGATAAAAGG
AAAGACCTATTGCTTCCCAGTGATGGGTGGGCTGAGAATGAAGTACCGCCGTCCCCGCCACCAC
ATCCCAGTCTGGAATGGGGCCTTGAAGACTTCAGTCACAGCTCTAGAGTGGATTCCACAGGATA
TTTTCCAGATCAACATGTCAATTTCAGAATTGTGACACCAGTCGGGCAGCCCGAATCAATTAAC
CTGAAAGCCTCCAAGAGCATGGACCTTGTGCCAGACGAAAGCAAAGTCCAGTCACTGGCTGATC
GCAGGTCAGACTCTCCAGGCAAAGATTTTGGTCCAACCCTGGGCCTGAAAAAGTCCAGTTCCTT
GGAGAGCCTACAGACTGCTGTGGCTGAAGTCAGGAAGAATGATCTGCCCTTCCACAGACCCAGA
CCACACATGGTGCGAGGCCGGGGCTGCAATGAGAGCTTCCGAGCAGCCATTGACAAATCTTACG
ACGGGCCAGAAGAGGCAGAAGCTGATGGTCTGTCTGATAAGAGCTCTCACTCGGGCCACACAGC
TCTGAATTGTGAGTCTGCCCCTCAGGGAAACCCTGAGCTAGATGATGTGGAAAATAAAGCCAAG
AACGTCAAAAAAACAAAAGAGAAGGAGAAGAAAAAAGGAAAGGGCAAGATGAAAGTCAAGGAAA
AAAAGCAGAAAGAGGAACATGAGGACACAGAGAGGAAAATGAAGAGGAAGGGCTTCGGCGCCAT
GCTGAGATTCGGAAAGAAGAAAGATGATAAAGTTGGGAAAACGGAACAGAAAGGTACACAGAAG
TCCGGGCACCCAGGAGAAGAAGAGCTGGAAAGGATGAAGGAAGAAAGGGAGAGGATTGGAGCAA
AACATCAGGAGCTAAGAGAAAAGCAGGCGAGAGGCCTTGTTGATTATGCCACTGTAGCGACTGG
ACCAGTGCACGATATAGACGACGATGAAATGGACCCCAATTATGCCAGAGTGAACCACTTTCGG
GAACCATGCACATCAGCAAATGTCTTTAGATCTCCATCTCCTCCTCGAGCTGGAACACTTGGTT
ACCCTAGGGATGGACGCCCACTGTCTCCAGACCACTTAGAGGGTCTCTATGCCAAGGTCAACAA
GCCATATCATCCACCAGCCCTAGCTGACAGTGGACGACCCATGGCAGGAACCACTGACCGCATC
CAGAAGCTTCGGAAGGAGTACTACCAGGCTCGGAGAGAAGGGTTCCTTTTGTATGAAGACGAAG
AGGGAGTAACAAGGCCGTCTGACTATGACCTGCACTGGGTGTCTGGAAAGGGTCCAGACGGGAG
CGCACACAACCTCCGCTTTGAGGGGATGGAGCGGCAGTATGCATCCTTACCCAGGGGAGGCTCA
GCAGATCCTGTGGACTACCTGACAGCTTCACCCCGAGGGCGCTACAATGAAAGAGAGCTTCCAT
ACTACCCAGGGCCTCATCCTGTGCATTCCCCAAGAGGGAGCTATCCCAGACCCCCGGATCTGAG
GGTGACCGATCTACGATACCCACAGTACTACCCACCCCCACCAGCCCATCAGCATAAAGGACCC
TTCAGACAAGATGTTCCTCCGTCACCACCTCAGCACCAGAGAGTACCAGTCTACCAGGAGATGG
GCAGGGCAGGGCCCCGAGGGGGCAGCCCTGACCAGTACCCCTATCGTAACCAGGATCCCAGGCA
GAAGAATCCCATGACTGCAGCAGTATAG

hide sequence

RefSeq Acc Id:

XM_039083322 ⟹ XP_038939250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	70,532,358 - 71,561,044 (+)	NCBI
mRatBN7.2	9	63,038,435 - 64,067,178 (+)	NCBI

RefSeq Acc Id:

XM_063266952 ⟹ XP_063123022

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	70,992,262 - 71,550,346 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178737	(Get FASTA)	NCBI Sequence Viewer
	XP_038939250	(Get FASTA)	NCBI Sequence Viewer
	XP_063123022	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98917	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000039831
	ENSRNOP00000039831.6
	ENSRNOP00000080352.2
	ENSRNOP00000087764.1
	ENSRNOP00000091023.1
	ENSRNOP00000093250.1
	ENSRNOP00000098764.1
	ENSRNOP00000103385.1
	ENSRNOP00000107481.1
	ENSRNOP00000107549.1
	ENSRNOP00000109415
	ENSRNOP00000109415.1

RefSeq Acc Id:

NP_001178737 ⟸ NM_001191808

- UniProtKB:

A0A8I5ZQH3 (UniProtKB/TrEMBL), A0A8I6A8L0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKVTVCFGRTGIVVPCKDGQLRVSELTQQALQRYLKTRDQDPGYWVKIHHLEYTDGGILDPDDV
LADVVEDKDKLIAVFDEQEPLQKIESPSGNPVDRQSPDAFDTEVAAQLAAFKPIGGEIVVTPSA
LKLGTPLLVRRSSDPAPGPHADAQPSTASPSGQSLKPVVLDSAQNLENRDVMNGEQTGLLMLHK
TKNELSDMTRAVEISGEGDPLGIHVVPFFSSLSGRILGLFIRGIEENSRCKQEGLFQENECIVK
INNVELLDKTFAQAQDVFRQAMKSPSVVLHVLLPQNREQYEKSVIGQLNIFGNNDSASRTKAPP
PTRGKAGLKAVNPTRANSPEGEESPSPQQSKSPRVPRLGRKPSSPSLSPLMGFGSKKNAKKIKI
DLKKGPEGLGFTVVTRDSSIHGPGPIFVKNILPKGAAVKDGRLQSGDRILEVNGRDVTGRTQEE
LVAMLRSTKQGETVSLVIARQEGSFLPRELKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVS
LKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSM
EGNIRGMIQLVILRRLERPLEEISECGALSRPCFENCQEALSASRRNDSSLLYPCGTYSPQDKR
KDLLLPSDGWAENEVPPSPPPHPSLEWGLEDFSHSSRVDSTGYFPDQHVNFRIVTPVGQPESIN
LKASKSMDLVPDESKVQSLADRRSDSPGKDFGPTLGLKKSSSLESLQTAVAEVRKNDLPFHRPR
PHMVRGRGCNESFRAAIDKSYDGPEEAEADGLSDKSSHSGHTALNCESAPQGNPELDDVENKAK
NVKKTKEKEKKKGKGKMKVKEKKQKEEHEDTERKMKRKGFGAMLRFGKKKDDKVGKTEQKGTQK
SGHPGEEELERMKEERERIGAKHQELREKQARGLVDYATVATGPVHDIDDDEMDPNYARVNHFR
EPCTSANVFRSPSPPRAGTLGYPRDGRPLSPDHLEGLYAKVNKPYHPPALADSGRPMAGTTDRI
QKLRKEYYQARREGFLLYEDEEGVTRPSDYDLHWVSGKGPDGSAHNLRFEGMERQYASLPRGGS
ADPVDYLTASPRGRYNERELPYYPGPHPVHSPRGSYPRPPDLRVTDLRYPQYYPPPPAHQHKGP
FRQDVPPSPPQHQRVPVYQEMGRAGPRGGSPDQYPYRNQDPRQKNPMTAAV

hide sequence

Ensembl Acc Id:

ENSRNOP00000039831 ⟸ ENSRNOT00000040778

RefSeq Acc Id:	XP_038939250 ⟸ XM_039083322
- Peptide Label:	isoform X1
- UniProtKB:	F1LW22 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000091023 ⟸ ENSRNOT00000104505

Ensembl Acc Id:

ENSRNOP00000080352 ⟸ ENSRNOT00000093936

Ensembl Acc Id:

ENSRNOP00000087764 ⟸ ENSRNOT00000100701

Ensembl Acc Id:

ENSRNOP00000093250 ⟸ ENSRNOT00000101906

RefSeq Acc Id:	XP_063123022 ⟸ XM_063266952
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GJB2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000103385 ⟸ ENSRNOT00000137956

Ensembl Acc Id:

ENSRNOP00000107481 ⟸ ENSRNOT00000139132

Ensembl Acc Id:

ENSRNOP00000107549 ⟸ ENSRNOT00000161308

Ensembl Acc Id:

ENSRNOP00000098764 ⟸ ENSRNOT00000157095

Ensembl Acc Id:

ENSRNOP00000109415 ⟸ ENSRNOT00000138401

Protein Domains

PDZ

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LW22-F1-model_v2	AlphaFold	F1LW22	1-1203	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1584992	AgrOrtholog
BioCyc Gene	G2FUF-27361	BioCyc
Ensembl Genes	ENSRNOG00000024345	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000040778	ENTREZGENE
	ENSRNOT00000040778.6	UniProtKB/TrEMBL
	ENSRNOT00000093936.2	UniProtKB/TrEMBL
	ENSRNOT00000100701.2	UniProtKB/TrEMBL
	ENSRNOT00000101906.2	UniProtKB/TrEMBL
	ENSRNOT00000104505.2	UniProtKB/TrEMBL
	ENSRNOT00000137956.1	UniProtKB/TrEMBL
	ENSRNOT00000138401	ENTREZGENE
	ENSRNOT00000138401.1	UniProtKB/TrEMBL
	ENSRNOT00000139132.1	UniProtKB/TrEMBL
	ENSRNOT00000157095.1	UniProtKB/TrEMBL
	ENSRNOT00000161308.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
	Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1	UniProtKB/TrEMBL
InterPro	DUF3534	UniProtKB/TrEMBL
	PAR3	UniProtKB/TrEMBL
	PDZ/DHR/GLGF	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
KEGG Report	rno:301455	UniProtKB/TrEMBL
NCBI Gene	301455	ENTREZGENE
PANTHER	PARTITIONING DEFECTIVE 3 HOMOLOG B	UniProtKB/TrEMBL
	PARTITIONING DEFECTIVE 3 RELATED	UniProtKB/TrEMBL
Pfam	DUF3534	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
PhenoGen	Pard3b	PhenoGen
PROSITE	PDZ	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000024345	RatGTEx
SMART	PDZ	UniProtKB/TrEMBL
Superfamily-SCOP	PDZ	UniProtKB/TrEMBL
UniProt	A0A8I5ZQH3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8L0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AIM2_RAT	UniProtKB/TrEMBL
	A0A8I6GJB2	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L317_RAT	UniProtKB/TrEMBL
	A0ABK0LAR6_RAT	UniProtKB/TrEMBL
	A0ABK0LAV9_RAT	UniProtKB/TrEMBL
	A0ABK0LY45_RAT	UniProtKB/TrEMBL
	A0ABK0M2X6_RAT	UniProtKB/TrEMBL
	F1LW22	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-11-19	Pard3b	par-3 family cell polarity regulator beta	Pard3b	par-3 partitioning defective 3 homolog B (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-20	Pard3b	par-3 partitioning defective 3 homolog B (C. elegans)	LOC301455	similar to amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 isoform b	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC301455	similar to amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 isoform b			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD