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Gene: Brpf1 (bromodomain and PHD finger containing, 1) Rattus norvegicus

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Symbol:

Brpf1

Name:

bromodomain and PHD finger containing, 1

RGD ID:

1584828

Description:

Predicted to enable acetyltransferase activator activity. Predicted to contribute to histone H4K12 acetyltransferase activity; histone H4K5 acetyltransferase activity; and histone H4K8 acetyltransferase activity. Predicted to be involved in chromatin remodeling; positive regulation of DNA-templated transcription; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within common myeloid progenitor cell proliferation; regulation of fibroblast proliferation; and tube morphogenesis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of MOZ/MORF histone acetyltransferase complex. Orthologous to human BRPF1 (bromodomain and PHD finger containing 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC679713; peregrin; similar to bromodomain and PHD finger-containing protein 1 isoform 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BRPF1 (bromodomain and PHD finger containing 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Brpf1 (bromodomain and PHD finger containing, 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Brpf1 (bromodomain and PHD finger containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BRPF1 (bromodomain and PHD finger containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BRPF1 (bromodomain and PHD finger containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Brpf1 (bromodomain and PHD finger containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BRPF1 (bromodomain and PHD finger containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BRPF1 (bromodomain and PHD finger containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Brpf1 (bromodomain and PHD finger containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Brpf1 (bromodomain and PHD finger containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	VAT1L (vesicle amine transport 1 like)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	BRPF1 (bromodomain and PHD finger containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Brpf1 (bromodomain and PHD finger containing, 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	brpf1 (bromodomain and PHD finger containing, 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	brpf1 (bromodomain and PHD finger containing, 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Br140	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NTO1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NTO1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lin-49	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lin-49	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	brpf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	148,011,977 - 148,028,431 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	148,011,931 - 148,028,424 (+)	Ensembl				GRCr8
mRatBN7.2	4	146,456,325 - 146,472,781 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	146,456,318 - 146,472,649 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	151,840,554 - 151,856,998 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	147,621,398 - 147,637,841 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	146,242,939 - 146,259,377 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	145,264,445 - 145,280,943 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	145,264,462 - 145,280,857 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	208,561,603 - 208,578,038 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	149,191,088 - 149,207,605 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	135,013,661 - 135,030,111 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Developmental Disabilities (ISO)

Developmental Disease (ISO)

Familial Sudden Death (ISO)

genetic disease (ISO)

Intellectual Developmental Disorder with Dysmorphic Facies and Ptosis (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

Prostatic Neoplasms (ISO)

syndromic intellectual disability (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

ciguatoxin CTX1B (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

cyclophosphamide (EXP)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

endosulfan (ISO)

ethanol (ISO)

FR900359 (ISO)

gentamycin (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

nitrates (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

propiconazole (EXP)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

thiram (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IBA,IEA,ISO)

common myeloid progenitor cell proliferation (ISO)

neural tube formation (ISO)

positive regulation of DNA-templated transcription (IEA,ISO)

regulation of DNA-templated transcription (IEA,ISO)

regulation of fibroblast proliferation (ISO)

regulation of transcription by RNA polymerase II (IBA)

vasculogenesis (ISO)

Cellular Component

cytoplasm (IEA,ISO)

histone acetyltransferase complex (IEA,ISO)

MOZ/MORF histone acetyltransferase complex (IBA,IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

acetyltransferase activator activity (IEA,ISO)

histone H4K12 acetyltransferase activity (IEA,ISO)

histone H4K5 acetyltransferase activity (IEA,ISO)

histone H4K8 acetyltransferase activity (IEA,ISO)

histone reader activity (IBA)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16387653	PMID:18794358	PMID:24065767	PMID:27528195	PMID:27939640

Genomics

Comparative Map Data

Brpf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	148,011,977 - 148,028,431 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	148,011,931 - 148,028,424 (+)	Ensembl				GRCr8
mRatBN7.2	4	146,456,325 - 146,472,781 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	146,456,318 - 146,472,649 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	151,840,554 - 151,856,998 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	147,621,398 - 147,637,841 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	146,242,939 - 146,259,377 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	145,264,445 - 145,280,943 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	145,264,462 - 145,280,857 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	208,561,603 - 208,578,038 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	149,191,088 - 149,207,605 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	135,013,661 - 135,030,111 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

BRPF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	9,731,735 - 9,748,015 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	9,731,729 - 9,748,019 (+)	Ensembl			hg38	GRCh38
GRCh37	3	9,773,419 - 9,789,699 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	9,748,434 - 9,764,699 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	9,748,433 - 9,764,699	NCBI
Celera	3	9,708,138 - 9,724,401 (+)	NCBI		Celera
Cytogenetic Map	3	p25.3	NCBI
HuRef	3	9,709,784 - 9,726,046 (+)	NCBI		HuRef
CHM1_1	3	9,723,635 - 9,739,894 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	9,723,693 - 9,739,970 (+)	NCBI		T2T-CHM13v2.0

Brpf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	113,283,824 - 113,301,823 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	113,284,098 - 113,301,821 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	113,306,863 - 113,324,862 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	113,307,137 - 113,324,860 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	113,257,191 - 113,274,703 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	113,272,974 - 113,290,486 (+)	NCBI		MGSCv36	mm8
Celera	6	115,134,173 - 115,151,713 (+)	NCBI		Celera
Cytogenetic Map	6	E3	NCBI
cM Map	6	52.75	NCBI

Brpf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955561	1,259,700 - 1,276,015 (+)	Ensembl
ChiLan1.0	NW_004955561	1,260,237 - 1,275,953 (+)	NCBI	ChiLan1.0	ChiLan1.0

BRPF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	9,743,480 - 9,759,884 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	9,748,210 - 9,766,489 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	9,684,091 - 9,700,376 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	9,922,769 - 9,939,025 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	9,922,769 - 9,939,016 (+)	Ensembl			panPan2	panpan1.1

BRPF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	8,493,183 - 8,508,785 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	8,493,167 - 8,506,449 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	8,526,270 - 8,541,869 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	8,522,487 - 8,538,098 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	8,522,490 - 8,538,079 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	8,244,959 - 8,260,554 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	8,589,484 - 8,605,076 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	8,563,097 - 8,578,724 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Brpf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	15,473,599 - 15,489,252 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936602	3,420,445 - 3,436,119 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936602	3,419,873 - 3,436,119 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BRPF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	66,021,325 - 66,037,445 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	66,021,047 - 66,037,446 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	73,110,023 - 73,126,116 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BRPF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	45,740,192 - 45,756,327 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	45,740,351 - 45,756,390 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	120,813,043 - 120,829,180 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Brpf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	4,364,565 - 4,383,157 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624731	4,364,870 - 4,381,581 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Brpf1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	33,210,599 - 33,226,609 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Brpf1
122 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	107
Count of miRNA genes:	84
Interacting mature miRNAs:	100
Transcripts:	ENSRNOT00000011246
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	86583980	149763391	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	107346299	152346299	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	117737142	152833657	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	111383604	156383604	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	108206096	153206096	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	111383604	156383604	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
2293840	Kiddil9	Kidney dilation QTL 9	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	4	113634167	149763391	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	103834277	148834277	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
12798527	Anxrr58	Anxiety related response QTL 58	4.11	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	121020385	148834277	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC183952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011246 ⟹ ENSRNOP00000011246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	148,011,931 - 148,028,424 (+)	Ensembl
mRatBN7.2 Ensembl	4	146,456,318 - 146,472,649 (+)	Ensembl
Rnor_6.0 Ensembl	4	145,264,462 - 145,280,857 (+)	Ensembl

RefSeq Acc Id:

NM_001191572 ⟹ NP_001178501

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	148,011,996 - 148,028,431 (+)	NCBI
mRatBN7.2	4	146,456,344 - 146,472,781 (+)	NCBI
Rnor_6.0	4	145,264,453 - 145,280,888 (+)	NCBI
Rnor_5.0	4	208,561,603 - 208,578,038 (+)	NCBI
Celera	4	135,013,661 - 135,030,111 (+)	NCBI

Sequence:

show sequence

CCGCCGCCGCTGCCACAGCCTTTGCCGCCACGGTCTCGCCGCCGCTGTCCCTGTGCCGCCTCCA
GGAGCCCCCTCTCCCCATTGTCCCGGCGGCACCGGGTTCCCAGGCCAGAAGATCCAAAAGCTCG
GGAAACGCGAGGATGTGACAGCATGGGGGTGGACTTTGATGTGAAGACCTTCTGCCACAACTTG
CGGGCAACTAAGCCACCATATGAGTGCCCTGTGGAGACTTGCCGCAAGGTTTACAAGAGTTACA
GTGGTATCGAGTACCACCTGTACCACTATGACCACGACAGCCCACCACCCCCACAGCAGACTCC
GCTGCGCAAGCACAAAAAGAAAGGGCGCCAGTCACGACCAGCCAACAAGCAGTCACCCAGCCCC
TCTGAGGTCTCACAGTCACCTGGCCGAGAGGTGATGAGCTATGCTCAGGCCCAGCGCATGGTAG
AAGTGGACCTTCATGGCCGTGTCCACCGAATCAGCATCTTTGACAACTTGGATGTGGTGTCGGA
GGATGAGGAGGCCCCTGAGGAGGCCCCTGAGAATGGCAGCAACAAGGAAAACACTGAGACACCT
GCAGCTACACCTAAGTCAGGCAAGCATAAGAATAAGGAAAAACGAAAGGACTCCAACCACCACC
ATCACAGCGCTCCTGCCAGTGCTGCTCCCAAACTGCCTGAGGTGGTGTATCGTGAGCTAGATCA
AGATACCCCTGATGCACCGCCCCGGCCTACTTCCTACTACCGGTACATCGAGAAGTCTGCAGAG
GAGCTGGATGAGGAGGTGGAGTATGATATGGATGAAGAGGACTACATCTGGCTGGATATCATGA
ACGAGCGGCGGAAGACTGAGGGTGTAAGTCCCATTCCACAAGAGATCTTTGAGTACTTAATGGA
CCGGTTGGAGAAGGAGTCGTACTTTGAGAGTCACAATAAAGGTGACCCCAATGCACTAGTGGAT
GAAGATGCTGTGTGCTGTATCTGCAATGATGGCGAGTGCCAGAACAGCAATGTTATCCTCTTCT
GTGACATGTGCAACTTGGCTGTGCACCAGGAGTGCTACGGTGTCCCCTATATCCCTGAAGGCCA
GTGGCTGTGCCGCCGTTGCCTGCAGTCACCTTCTCGTGCAGTGGACTGTGCTCTGTGCCCCAAT
AAGGGCGGTGCCTTCAAGCAGACAGATGATGGCCGCTGGGCCCACGTGGTGTGTGCCTTGTGGA
TCCCTGAGGTCTGCTTTGCCAACACAGTCTTCCTAGAACCTATCGATAGCATTGAGCACATCCC
ACCAGCTCGGTGGAAGCTCACCTGCTACATTTGTAAACAGCGGGGCTCCGGAGCCTGCATCCAG
TGCCATAAGGCCAATTGCTACACAGCCTTCCATGTGACATGTGCCCAACAGGCTGGCCTTTACA
TGAAGATGGAGCCTGTGCGTGAAACAGGTGCCAATGGTACCTCCTTTAGTGTCCGCAAGACAGC
CTACTGTGACATCCACACACCCCCAGGTTCTGCTCGTCGCCTGCCTGCTTTATCCCACAGTGAA
GGTGAGGAAGAAGAGGATGAAGAAGAAGATGAGGGTAAGAGCTGGAGCTCAGAGAAGGTCAAGA
AGGCCAAGGCTAAGTCCCGGATTAAGATGAAGAAAGCTCGAAAGATCTTGGCAGAAAAGAGGGC
AGCAGCACCTGTGGTGTCCGTGCCCTGCATCCCACCACACAGGCTCAGTAAGATCACCAACCGC
CTGACCATCCAGAGGAAGAGCCAGTTCATGCAGAGGCTACATAGCTACTGGACTCTGAAACGAC
AATCACGGAATGGGGTCCCACTACTCCGGCGCCTGCAAACACACCTTCAGTCTCAGAGGAACTG
TGATCAAGTTGGGAGAGATTCTGAAGATAAGAACTGGGCTCTCAAAGAACAGCTCAAGTCCTGG
CAGAGACTCCGGCATGACCTGGAGCGAGCTCGGCTACTGGTGGAGTTGATCCGAAAGCGAGAGA
AACTGAAAAGGGAGACGATCAAGATCCAGCAGATTGCCATGGAAATGCAGCTGACCCCTTTCCT
CATCCTCCTCCGAAAAACCTTGGAACAGCTCCAAGAGAAGGACACAGGCAACATCTTCAGCGAG
CCGGTCCCTCTGTCTGAGGTACCTGACTACCTAGACCACATCAAAAAACCCATGGACTTTTTCA
CCATGAAGCAGAACTTGGAGGCTTACCGCTACTTGAACTTTGATGATTTTGAGGAGGACTTCAA
CCTCATTGTCAGCAACTGCCTAAAGTATAATGCCAAGGACACCATCTTCTACAGGGCAGCAGTG
CGACTCCGTGAGCAGGGTGGTGCTGTCCTCCGTCAAGCCCGGCGCCAGGCAGAAAAAATGGGCA
TTGACTTTGAGACGGGCATGCATATCCCTCACAACTTGGCCGGAGATGAGGTCTCACACCACAC
TGAAGATGTAGAGGAAGAGCGTCTGGTCCTGCTGGAGAACCAGAAACACCTGCCAGTAGAAGAA
CAGCTGAAGTTGTTGCTGGAGCGGCTGGACGAAGTCAATGCCAGCAAGCAGAGTGTGGGCCGCT
CCCGGCGTGCAAAAATGATCAAGAAGGAGATGACAGCACTGCGGCGAAAGCTTGCTCATCAGCG
GGAGACTGGCCGGGATGGGCCTGAGCGTCATGGTCCCTCAGGTCGGGGCAATCTGACACCCCAC
CCAGCAGCCTGTGACAAGGATGGACAGACTGACAGTGCTGCAGAAGAGAGCAGCAGCCAGGAAA
CAAGCAAAGGCCTGGGTCCCAACATGTCCTCAACCCCCGCACATGAGGTGGGCAGGAGAACCTC
AGTTCTGTTCTCCAAAAAGAACCCGAAGACAGCTGGACCGCCCAAGAGGCCGGGCCGGCCCCCA
AAAAACCGGGAGAGCCAGATGACCCCCAGCCATGGAGGCAGTCCTGTGGGGCCCCCTCAGCTCC
CCATCATGGGCTCCCTACGTCAGCGCAAGCGGGGTAGGAGTCCCCGGCCCAGTTCAAGCTCAGA
CAGCGACAGTGATAAATCCACAGAAGATCCCCCAATGGACTTACCAGCCAATGGCTTCAGCAGT
GGGAACCAGCCAGTGAAGAAGAGTTTCTTGGTGTACCGTAATGACTGCAACCTTCCCCGGAGTA
GCTCAGACTCTGAGTCCAGCAGCAGCAGCAGCAGCAGTGCGGCCTCAGACCGGACCAGCACAAC
ACCCTCAAAGCAAGGCCGGGGCAAGCCCTCCTTCTCTCGGGGCACATTCCCAGAGGACAGCAGT
GAAGATACCTCAGGCACTGAGAATGAGGCCTACTCCGTGGGCACTGGCCGCGGCGTGGGCCACA
GCAGTAAGTACCCTCACCCAAAGTCAGGGGTGCTGGGGACCCAGTTTCAAAGCCTTGCCAGCCC
CCCAGCTGCTGATCCGTCCCCTCTCTCCCGTTCCTGTGAAGTGGTAAGAAAGAGTCTGGGTCGA
GGAGCTGGCTGGCTGTCAGAGGATGAAGACTCCCCATTGGATGCTCTGGACCTTGTGTGGGCCA
AATGCCGAGGCTATCCATCATACCCAGCTCTGATCATTGATCCAAAGATGCCCCGAGAAGGTAT
GTTCCACCATGGGGTTCCCATCCCTGTACCACCACTGGAGGTTCTGAAACTTGGGGAACAGATG
ACACAGGAAGCCCGAGAGCATCTCTACCTCGTTCTCTTCTTTGACAACAAACGAACCTGGCAGT
GGCTGCCCCGGACTAAACTCGTTCCTCTGGGTGTGAACCAGGATCTAGACAAAGAGAAGATGCT
GGAGGGTCGCAAGTCCAACATCCGAAAGTCAGTGCAAATTGCCTACCACAGGGCTCTGCAGCAC
CGAAGCAAGGTGCAGGGTGAGCAGAGCAGCGAGACCAGCGATAGCGACTGATACTGTCAGAGGC
CAGTGGTACTCTGTGATGGCTCTCCTTCCCTTTGCTCATTGTCCTGGAGTGATGCCGCCCTCTG
CACTGATCAATTCCTGGTCTTGGGGCCAGTCTCAGGGGAAGTTGGGTAGGGGAGGTCCCTCCTG
CCCTGAGTGCAGCTGGACTGTACAAAACACTCCAAGGGCCCATGGCCACTCAGTGCAAGGAGAG
GAGAGGTCTCACAGGTCTAAAGAGTTCAAGAACTCATGGCATTGTAGGGTAGGGTGGTGGGCCT
CAATTCGAATACTGTAAAAAACAGGCCATACCACCCTTACCTGCTCATGCTAGGGGAATTCATA
ACTGCCTAGAGGCCTGAGGCCCTTGCAGGTGGTAAGGTAAATCAGCATCTTCCCAGCCTAGCAG
TGGGATTGATGTCTGTCTAGCCTGGAAGAGGGGCACTAGGTGACCCCTCCCCTGCTGTTGTAAA
TACTGTAATTATTGGAGAATTTAAATTATTCTCATTTGTAACTGCGTTTCCGGGTCGCGCCAGA
GTCATTTGGTACTAAAAAAAAGAAAAAGAAAAAAAAAAAAAAAGAATGGAGCTTGTCTCTACTT
CCTTTCTTTTTCCCATAGAGTCCCCCTCTACCTTTCAAACTGGTTTGTATTTATTTCAAAGGAA
GAAAATATATTGATTCTTAGAAAATAAA

hide sequence

RefSeq Acc Id:

NM_001415934 ⟹ NP_001402863

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	148,011,977 - 148,028,431 (+)	NCBI
mRatBN7.2	4	146,456,325 - 146,472,781 (+)	NCBI

RefSeq Acc Id:

XM_006237055 ⟹ XP_006237117

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	148,014,253 - 148,028,431 (+)	NCBI
mRatBN7.2	4	146,456,346 - 146,472,781 (+)	NCBI
Rnor_6.0	4	145,264,445 - 145,280,943 (+)	NCBI
Rnor_5.0	4	208,561,603 - 208,578,038 (+)	NCBI

Sequence:

show sequence

CGCTGCTGCCGCCGCCGCTGCCACAGCCTTTGCCGCCACGGTCTCGCCGCCGCTGTCCCTGTGC
CGCCTCCAGGAGCCCCCTCTCCCCATTGTCCCGGCGGCACCGGGTTCCCAGGCCAGAAGATCCA
AAAGCTCGGGAAACGCGAGGGTGCTTGCGGAATTGCGACGCTGGGGCACCGGCGGGACCAGGAG
TGGCAGGGGTCAGCGCGGGAAGCCGGGGGAGCCGGGCCAGAGCGTGCGAGGCAGGAGCCGGGGC
GGCCACCTTCGCGTCTCGGAGTTCGGGTTTCCCCTTCTCGGCCCGTCTTTCCTCGCCGGCCTCC
CCACGCGGGGTCGGAGCCCCGGCGGGCGCCCCCGGCAATGAGCCCGGACTGGAGGTGGCCGATG
TGACAGCATGGGGGTGGACTTTGATGTGAAGACCTTCTGCCACAACTTGCGGGCAACTAAGCCA
CCATATGAGTGCCCTGTGGAGACTTGCCGCAAGGTTTACAAGAGTTACAGTGGTATCGAGTACC
ACCTGTACCACTATGACCACGACAGCCCACCACCCCCACAGCAGACTCCGCTGCGCAAGCACAA
AAAGAAAGGGCGCCAGTCACGACCAGCCAACAAGCAGTCACCCAGCCCCTCTGAGGTCTCACAG
TCACCTGGCCGAGAGGTGATGAGCTATGCTCAGGCCCAGCGCATGGTAGAAGTGGACCTTCATG
GCCGTGTCCACCGAATCAGCATCTTTGACAACTTGGATGTGGTGTCGGAGGATGAGGAGGCCCC
TGAGGAGGCCCCTGAGAATGGCAGCAACAAGGAAAACACTGAGACACCTGCAGCTACACCTAAG
TCAGGCAAGCATAAGAATAAGGAAAAACGAAAGGACTCCAACCACCACCATCACAGCGCTCCTG
CCAGTGCTGCTCCCAAACTGCCTGAGGTGGTGTATCGTGAGCTAGATCAAGATACCCCTGATGC
ACCGCCCCGGCCTACTTCCTACTACCGGTACATCGAGAAGTCTGCAGAGGAGCTGGATGAGGAG
GTGGAGTATGATATGGATGAAGAGGACTACATCTGGCTGGATATCATGAACGAGCGGCGGAAGA
CTGAGGGTGTAAGTCCCATTCCACAAGAGATCTTTGAGTACTTAATGGACCGGTTGGAGAAGGA
GTCGTACTTTGAGAGTCACAATAAAGGTGACCCCAATGCACTAGTGGATGAAGATGCTGTGTGC
TGTATCTGCAATGATGGCGAGTGCCAGAACAGCAATGTTATCCTCTTCTGTGACATGTGCAACT
TGGCTGTGCACCAGGAGTGCTACGGTGTCCCCTATATCCCTGAAGGCCAGTGGCTGTGCCGCCG
TTGCCTGCAGTCACCTTCTCGTGCAGTGGACTGTGCTCTGTGCCCCAATAAGGGCGGTGCCTTC
AAGCAGACAGATGATGGCCGCTGGGCCCACGTGGTGTGTGCCTTGTGGATCCCTGAGGTCTGCT
TTGCCAACACAGTCTTCCTAGAACCTATCGATAGCATTGAGCACATCCCACCAGCTCGGTGGAA
GCTCACCTGCTACATTTGTAAACAGCGGGGCTCCGGAGCCTGCATCCAGTGCCATAAGGCCAAT
TGCTACACAGCCTTCCATGTGACATGTGCCCAACAGGCTGGCCTTTACATGAAGATGGAGCCTG
TGCGTGAAACAGGTGCCAATGGTACCTCCTTTAGTGTCCGCAAGACAGCCTACTGTGACATCCA
CACACCCCCAGGTTCTGCTCGTCGCCTGCCTGCTTTATCCCACAGTGAAGGTGAGGAAGAAGAG
GATGAAGAAGAAGATGAGGGTAAGAGCTGGAGCTCAGAGAAGGTCAAGAAGGCCAAGGCTAAGT
CCCGGATTAAGATGAAGAAAGCTCGAAAGATCTTGGCAGAAAAGAGGGCAGCAGCACCTGTGGT
GTCCGTGCCCTGCATCCCACCACACAGGCTCAGTAAGATCACCAACCGCCTGACCATCCAGAGG
AAGAGCCAGTTCATGCAGAGGCTACATAGCTACTGGACTCTGAAACGACAATCACGGAATGGGG
TCCCACTACTCCGGCGCCTGCAAACACACCTTCAGTCTCAGAGGAACTGTGATCAAGTTGGGAG
AGATTCTGAAGATAAGAACTGGGCTCTCAAAGAACAGCTCAAGTCCTGGCAGAGACTCCGGCAT
GACCTGGAGCGAGCTCGGCTACTGGTGGAGTTGATCCGAAAGCGAGAGAAACTGAAAAGGGAGA
CGATCAAGATCCAGCAGATTGCCATGGAAATGCAGCTGACCCCTTTCCTCATCCTCCTCCGAAA
AACCTTGGAACAGCTCCAAGAGAAGGACACAGGCAACATCTTCAGCGAGCCGGTCCCTCTGTCT
GAGGTAACCGAATTGGACGAAGTACCTGACTACCTAGACCACATCAAAAAACCCATGGACTTTT
TCACCATGAAGCAGAACTTGGAGGCTTACCGCTACTTGAACTTTGATGATTTTGAGGAGGACTT
CAACCTCATTGTCAGCAACTGCCTAAAGTATAATGCCAAGGACACCATCTTCTACAGGGCAGCA
GTGCGACTCCGTGAGCAGGGTGGTGCTGTCCTCCGTCAAGCCCGGCGCCAGGCAGAAAAAATGG
GCATTGACTTTGAGACGGGCATGCATATCCCTCACAACTTGGCCGGAGATGAGGTCTCACACCA
CACTGAAGATGTAGAGGAAGAGCGTCTGGTCCTGCTGGAGAACCAGAAACACCTGCCAGTAGAA
GAACAGCTGAAGTTGTTGCTGGAGCGGCTGGACGAAGTCAATGCCAGCAAGCAGAGTGTGGGCC
GCTCCCGGCGTGCAAAAATGATCAAGAAGGAGATGACAGCACTGCGGCGAAAGCTTGCTCATCA
GCGGGAGACTGGCCGGGATGGGCCTGAGCGTCATGGTCCCTCAGGTCGGGGCAATCTGACACCC
CACCCAGCAGCCTGTGACAAGGATGGACAGACTGACAGTGCTGCAGAAGAGAGCAGCAGCCAGG
AAACAAGCAAAGGCCTGGGTCCCAACATGTCCTCAACCCCCGCACATGAGGTGGGCAGGAGAAC
CTCAGTTCTGTTCTCCAAAAAGAACCCGAAGACAGCTGGACCGCCCAAGAGGCCGGGCCGGCCC
CCAAAAAACCGGGAGAGCCAGATGACCCCCAGCCATGGAGGCAGTCCTGTGGGGCCCCCTCAGC
TCCCCATCATGGGCTCCCTACGTCAGCGCAAGCGGGGTAGGAGTCCCCGGCCCAGTTCAAGCTC
AGACAGCGACAGTGATAAATCCACAGAAGATCCCCCAATGGACTTACCAGCCAATGGCTTCAGC
AGTGGGAACCAGCCAGTGAAGAAGAGTTTCTTGGTGTACCGTAATGACTGCAACCTTCCCCGGA
GTAGCTCAGACTCTGAGTCCAGCAGCAGCAGCAGCAGCAGTGCGGCCTCAGACCGGACCAGCAC
AACACCCTCAAAGCAAGGCCGGGGCAAGCCCTCCTTCTCTCGGGGCACATTCCCAGAGGACAGC
AGTGAAGATACCTCAGGCACTGAGAATGAGGCCTACTCCGTGGGCACTGGCCGCGGCGTGGGCC
ACAGCAGTAAGTACCCTCACCCAAAGTCAGGGGTGCTGGGGACCCAGTTTCAAAGCCTTGCCAG
CCCCCCAGCTGCTGATCCGTCCCCTCTCTCCCGTTCCTGTGAAGTGGTAAGAAAGAGTCTGGGT
CGAGGAGCTGGCTGGCTGTCAGAGGATGAAGACTCCCCATTGGATGCTCTGGACCTTGTGTGGG
CCAAATGCCGAGGCTATCCATCATACCCAGCTCTGATCATTGATCCAAAGATGCCCCGAGAAGG
TATGTTCCACCATGGGGTTCCCATCCCTGTACCACCACTGGAGGTTCTGAAACTTGGGGAACAG
ATGACACAGGAAGCCCGAGAGCATCTCTACCTCGTTCTCTTCTTTGACAACAAACGAACCTGGC
AGTGGCTGCCCCGGACTAAACTCGTTCCTCTGGGTGTGAACCAGGATCTAGACAAAGAGAAGAT
GCTGGAGGGTCGCAAGTCCAACATCCGAAAGTCAGTGCAAATTGCCTACCACAGGGCTCTGCAG
CACCGAAGCAAGGTGCAGGGTGAGCAGAGCAGCGAGACCAGCGATAGCGACTGATACTGTCAGA
GGCCAGTGGTACTCTGTGATGGCTCTCCTTCCCTTTGCTCATTGTCCTGGAGTGATGCCGCCCT
CTGCACTGATCAATTCCTGGTCTTGGGGCCAGTCTCAGGGGAAGTTGGGTAGGGGAGGTCCCTC
CTGCCCTGAGTGCAGCTGGACTGTACAAAACACTCCAAGGGCCCATGGCCACTCAGTGCAAGGA
GAGGAGAGGTCTCACAGGTCTAAAGAGTTCAAGAACTCATGGCATTGTAGGGTAGGGTGGTGGG
CCTCAATTCGAATACTGTAAAAAACAGGCCATACCACCCTTACCTGCTCATGCTAGGGGAATTC
ATAACTGCCTAGAGGCCTGAGGCCCTTGCAGGTGGTAAGGTAAATCAGCATCTTCCCAGCCTAG
CAGTGGGATTGATGTCTGTCTAGCCTGGAAGAGGGGCACTAGGTGACCCCTCCCCTGCTGTTGT
AAATACTGTAATTATTGGAGAATTTAAATTATTCTCATTTGTAACTGCGTTTCCGGGTCGCGCC
AGAGTCATTTGGTACTAAAAAAAAGAAAAAGAAAAAAAAAAAAAAAGAATGGAGCTTGTCTCTA
CTTCCTTTCTTTTTCCCATAGAGTCCCCCTCTACCTTTCAAACTGGTTTGTATTTATTTCAAAG
GAAGAAAATATATTGATTCTTAGAAAATAAAGTCTATTTAGAATTCTTTCTTCATGCCTTCGAC
TAGGGCAGAGGGATTCAGGAGA

hide sequence

RefSeq Acc Id:

XM_039108330 ⟹ XP_038964258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	148,014,253 - 148,028,431 (+)	NCBI
mRatBN7.2	4	146,456,346 - 146,472,781 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178501	(Get FASTA)	NCBI Sequence Viewer
	NP_001402863	(Get FASTA)	NCBI Sequence Viewer
	XP_006237117	(Get FASTA)	NCBI Sequence Viewer
	XP_038964258	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL91518	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011246
	ENSRNOP00000011246.6

RefSeq Acc Id:

NP_001178501 ⟸ NM_001191572

- Peptide Label:

isoform 1

- Sequence:

show sequence

MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKK
GRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEE
APENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELDQDTPDAPP
RPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESY
FESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCL
QSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLT
CYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTP
PGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSV
PCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDS
EDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTL
EQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCL
KYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEVSHHTEDVEEER
LVLLENQKHLPVEEQLKLLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGP
ERHGPSGRGNLTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKN
PKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKST
EDPPMDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRG
KPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHSSKYPHPKSGVLGTQFQSLASPPAADPSP
LSRSCEVVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPI
PVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNI
RKSVQIAYHRALQHRSKVQGEQSSETSDSD

hide sequence

RefSeq Acc Id:	XP_006237117 ⟸ XM_006237055
- Peptide Label:	isoform X1
- UniProtKB:	D4A411 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKK GRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEE APENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELDQDTPDAPP RPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESY FESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCL QSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLT CYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTP PGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSV PCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDS EDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTL EQLQEKDTGNIFSEPVPLSEVTELDEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNL IVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEVSHHTE DVEEERLVLLENQKHLPVEEQLKLLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRE TGRDGPERHGPSGRGNLTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSV LFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDS DSDKSTEDPPMDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTP SKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHSSKYPHPKSGVLGTQFQSLASPP AADPSPLSRSCEVVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMF HHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLE GRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD hide sequence

Ensembl Acc Id:

ENSRNOP00000011246 ⟸ ENSRNOT00000011246

RefSeq Acc Id:	XP_038964258 ⟸ XM_039108330
- Peptide Label:	isoform X2

RefSeq Acc Id:	NP_001402863 ⟸ NM_001415934
- Peptide Label:	isoform 2
- UniProtKB:	A6IBQ0 (UniProtKB/TrEMBL)

Protein Domains

Bromo C2H2-type PHD-type PWWP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A411-F1-model_v2	AlphaFold	D4A411	1-1212	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693294

Promoter ID:

EPDNEW_R3818

Type:

initiation region

Name:

Brpf1_1

Description:

bromodomain and PHD finger containing, 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	145,264,464 - 145,264,524	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1584828	AgrOrtholog
BioCyc Gene	G2FUF-43396	BioCyc
Ensembl Genes	ENSRNOG00000008142	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011246	ENTREZGENE
	ENSRNOT00000011246.7	UniProtKB/TrEMBL
Gene3D-CATH	1.20.920.10	UniProtKB/TrEMBL
	2.30.30.140	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
InterPro	Bromodomain	UniProtKB/TrEMBL
	Bromodomain-like_sf	UniProtKB/TrEMBL
	Bromodomain_CS	UniProtKB/TrEMBL
	BRPF1_PHD	UniProtKB/TrEMBL
	BRPF1_PWWP	UniProtKB/TrEMBL
	Enhancer_of_polycomb-like	UniProtKB/TrEMBL
	EPHD	UniProtKB/TrEMBL
	Histone_Mod_Regulator	UniProtKB/TrEMBL
	Peregrin_ePHD	UniProtKB/TrEMBL
	PWWP	UniProtKB/TrEMBL
	Zinc_finger_PHD-type_CS	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
NCBI Gene	679713	ENTREZGENE
PANTHER	PEREGRIN	UniProtKB/TrEMBL
	PHD FINGER PROTEINS	UniProtKB/TrEMBL
Pfam	Bromodomain	UniProtKB/TrEMBL
	EPL1	UniProtKB/TrEMBL
	PHD_2	UniProtKB/TrEMBL
	PWWP	UniProtKB/TrEMBL
	zf-HC5HC2H_2	UniProtKB/TrEMBL
PhenoGen	Brpf1	PhenoGen
PRINTS	BROMODOMAIN	UniProtKB/TrEMBL
PROSITE	BROMODOMAIN_1	UniProtKB/TrEMBL
	BROMODOMAIN_2	UniProtKB/TrEMBL
	EPHD	UniProtKB/TrEMBL
	PWWP	UniProtKB/TrEMBL
	ZF_PHD_1	UniProtKB/TrEMBL
	ZF_PHD_2	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008142	RatGTEx
SMART	BROMO	UniProtKB/TrEMBL
	PHD	UniProtKB/TrEMBL
	PWWP	UniProtKB/TrEMBL
Superfamily-SCOP	Bromodomain	UniProtKB/TrEMBL
	FYVE_PHD_ZnF	UniProtKB/TrEMBL
	Tudor/PWWP/MBT	UniProtKB/TrEMBL
UniProt	A6IBQ0	ENTREZGENE, UniProtKB/TrEMBL
	D4A411	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Brpf1	bromodomain and PHD finger containing, 1	LOC679713	similar to bromodomain and PHD finger-containing protein 1 isoform 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC679713	similar to bromodomain and PHD finger-containing protein 1 isoform 1	LOC687462	similar to bromodomain and PHD finger-containing protein 1 isoform 1	Data merged from RGD:1585343	1643240	APPROVED
2006-11-19	LOC679713	similar to bromodomain and PHD finger-containing protein 1 isoform 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC687462	similar to bromodomain and PHD finger-containing protein 1 isoform 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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