Meiob (meiosis specific with OB-fold) - Rat Genome Database

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Gene: Meiob (meiosis specific with OB-fold) Rattus norvegicus
Analyze
Symbol: Meiob
Name: meiosis specific with OB-fold
RGD ID: 1583204
Description: Predicted to enable chromatin binding activity; single-stranded DNA 3'-5' DNA exonuclease activity; and single-stranded DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination; fertilization; and meiosis I. Predicted to be located in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in primary ovarian insufficiency and spermatogenic failure 22. Orthologous to human MEIOB (meiosis specific with OB-fold); INTERACTS WITH 1-naphthyl isothiocyanate; bisphenol A; bromobenzene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC685099; LOC685099; meiosis specific with OB domains; meiosis-specific with OB domain-containing protein; MGC187464; similar to holdem CG15329-PA; uncharacterized protein C16orf73 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,336,869 - 14,369,566 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1014,338,288 - 14,369,565 (+)EnsemblGRCr8
mRatBN7.21013,833,170 - 13,865,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,833,750 - 13,865,046 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1018,580,847 - 18,612,105 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,069,707 - 18,100,965 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,568,920 - 13,600,178 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,174,645 - 14,206,026 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,174,732 - 14,206,025 (+)Ensemblrn6Rnor6.0
Rnor_5.01013,990,663 - 14,022,041 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41014,061,839 - 14,093,132 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1013,512,997 - 13,544,262 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
cytoplasm  (IEA,ISO,ISS)
nucleus  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:15632090   PMID:20339383   PMID:24068956   PMID:24240703  


Genomics

Comparative Map Data
Meiob
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,336,869 - 14,369,566 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1014,338,288 - 14,369,565 (+)EnsemblGRCr8
mRatBN7.21013,833,170 - 13,865,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,833,750 - 13,865,046 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1018,580,847 - 18,612,105 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,069,707 - 18,100,965 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,568,920 - 13,600,178 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,174,645 - 14,206,026 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,174,732 - 14,206,025 (+)Ensemblrn6Rnor6.0
Rnor_5.01013,990,663 - 14,022,041 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41014,061,839 - 14,093,132 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1013,512,997 - 13,544,262 (+)NCBICelera
Cytogenetic Map10q12NCBI
MEIOB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,833,986 - 1,872,164 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,833,986 - 1,884,294 (-)Ensemblhg38GRCh38
GRCh37161,883,987 - 1,922,165 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,823,990 - 1,850,456 (-)NCBIBuild 36Build 36hg18NCBI36
Celera162,096,249 - 2,134,396 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,806,985 - 1,847,146 (-)NCBIHuRef
CHM1_1161,883,971 - 1,922,162 (-)NCBICHM1_1
T2T-CHM13v2.0161,849,860 - 1,889,999 (-)NCBIT2T-CHM13v2.0
Meiob
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,023,275 - 25,058,762 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,023,263 - 25,058,762 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381724,804,301 - 24,839,788 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,804,289 - 24,839,788 (+)Ensemblmm10GRCm38
MGSCv371724,941,327 - 24,976,732 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361724,556,727 - 24,567,387 (+)NCBIMGSCv36mm8
Celera1725,332,560 - 25,366,618 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
Meiob
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,409,344 - 15,444,996 (+)Ensembl
ChiLan1.0NW_00495544215,409,344 - 15,444,996 (+)NCBIChiLan1.0ChiLan1.0
LOC100972985
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,479,191 - 2,517,954 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,261,166 - 6,299,945 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016835,420 - 874,178 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1161,927,145 - 1,956,522 (-)NCBIPanPan1.1PanPan1.1panPan2
MEIOB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,048,335 - 39,075,957 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,048,278 - 39,076,035 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha640,287,548 - 40,315,129 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0639,364,859 - 39,392,466 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,367,207 - 39,392,427 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,041,622 - 39,069,201 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,014,167 - 39,041,761 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,492,885 - 39,520,472 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Meiob
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,533,184 - 104,566,720 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,142,800 - 2,176,239 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,099,967 - 2,176,279 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEIOB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,092,732 - 40,133,171 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1340,092,689 - 40,133,173 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MEIOB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,738,250 - 1,779,412 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,738,275 - 1,773,727 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606829,300,403 - 29,345,355 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Meiob
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913394,154 - 426,196 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624913389,772 - 426,196 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Meiob
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v192,092,785 - 2,124,500 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Meiob
276 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:19
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000060551
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
D10Got26  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21013,838,974 - 13,839,151 (+)MAPPERmRatBN7.2
mRatBN7.21013,838,926 - 13,839,151 (+)MAPPERmRatBN7.2
Rnor_6.01014,179,909 - 14,180,133NCBIRnor6.0
Rnor_6.01014,179,957 - 14,180,133NCBIRnor6.0
Rnor_5.01013,995,973 - 13,996,149UniSTSRnor5.0
Rnor_5.01013,995,925 - 13,996,149UniSTSRnor5.0
RGSC_v3.41014,067,016 - 14,067,240UniSTSRGSC3.4
RGSC_v3.41014,066,785 - 14,067,264RGDRGSC3.4
RGSC_v3.41014,067,064 - 14,067,240UniSTSRGSC3.4
Celera1013,518,222 - 13,518,400UniSTS
Celera1013,518,174 - 13,518,400UniSTS
RGSC_v3.11014,067,064 - 14,067,240RGD
RH 3.4 Map10179.2RGD
RH 3.4 Map10179.2UniSTS
RH 2.0 Map10134.7RGD
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 7 23 80 89 89 58 75 58 6 253 124 9 55 52 78 31 10 10

Sequence


Ensembl Acc Id: ENSRNOT00000060551   ⟹   ENSRNOP00000057290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1014,338,288 - 14,369,565 (+)Ensembl
mRatBN7.2 Ensembl1013,833,750 - 13,865,046 (+)Ensembl
Rnor_6.0 Ensembl1014,174,732 - 14,206,025 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094743   ⟹   ENSRNOP00000082963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1014,338,288 - 14,369,565 (+)Ensembl
mRatBN7.2 Ensembl1013,833,750 - 13,865,046 (+)Ensembl
RefSeq Acc Id: NM_001115033   ⟹   NP_001108505
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,338,272 - 14,369,566 (+)NCBI
mRatBN7.21013,833,750 - 13,865,047 (+)NCBI
Rnor_6.01014,174,732 - 14,206,026 (+)NCBI
Rnor_5.01013,990,663 - 14,022,041 (+)NCBI
RGSC_v3.41014,061,839 - 14,093,132 (+)RGD
Celera1013,512,997 - 13,544,262 (+)RGD
Sequence:
RefSeq Acc Id: XM_006246031   ⟹   XP_006246093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,336,882 - 14,369,566 (+)NCBI
mRatBN7.21013,833,771 - 13,865,681 (+)NCBI
Rnor_6.01014,174,770 - 14,206,026 (+)NCBI
Rnor_5.01013,990,663 - 14,022,041 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039086830   ⟹   XP_038942758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,348,549 - 14,369,566 (+)NCBI
mRatBN7.21013,844,030 - 13,865,684 (+)NCBI
RefSeq Acc Id: XM_039086831   ⟹   XP_038942759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,336,877 - 14,364,744 (+)NCBI
mRatBN7.21013,833,170 - 13,860,225 (+)NCBI
RefSeq Acc Id: XM_063269834   ⟹   XP_063125904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,336,869 - 14,369,566 (+)NCBI
RefSeq Acc Id: NP_001108505   ⟸   NM_001115033
- UniProtKB: B0BMX9 (UniProtKB/Swiss-Prot),   A0A8I5ZW82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006246093   ⟸   XM_006246031
- Peptide Label: isoform X1
- UniProtKB: B0BMX9 (UniProtKB/Swiss-Prot),   A0A8I5ZW82 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000057290   ⟸   ENSRNOT00000060551
RefSeq Acc Id: XP_038942759   ⟸   XM_039086831
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038942758   ⟸   XM_039086830
- Peptide Label: isoform X2
- UniProtKB: A6HCX5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000082963   ⟸   ENSRNOT00000094743
RefSeq Acc Id: XP_063125904   ⟸   XM_063269834
- Peptide Label: isoform X3
Protein Domains
MEIOB-like N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BMX9-F1-model_v2 AlphaFold B0BMX9 1-470 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583204 AgrOrtholog
BioCyc Gene G2FUF-25822 BioCyc
Ensembl Genes ENSRNOG00000014711 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000060551 ENTREZGENE
  ENSRNOT00000060551.3 UniProtKB/Swiss-Prot
  ENSRNOT00000094743 ENTREZGENE
Gene3D-CATH 2.40.50.140 UniProtKB/Swiss-Prot
InterPro MEIOB UniProtKB/Swiss-Prot
  NA-bd_OB-fold UniProtKB/Swiss-Prot
  OB_MEIOB_N UniProtKB/Swiss-Prot
KEGG Report rno:685099 UniProtKB/Swiss-Prot
NCBI Gene 685099 ENTREZGENE
PANTHER MEIOSIS-SPECIFIC WITH OB DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
  UNCHARACTERIZED UniProtKB/Swiss-Prot
Pfam OB_MEIOB_N UniProtKB/Swiss-Prot
PhenoGen Meiob PhenoGen
RatGTEx ENSRNOG00000014711 RatGTEx
Superfamily-SCOP SSF50249 UniProtKB/Swiss-Prot
UniProt A0A8I5ZW82 ENTREZGENE, UniProtKB/TrEMBL
  A6HCX5 ENTREZGENE, UniProtKB/TrEMBL
  B0BMX9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Meiob  meiosis specific with OB-fold  Meiob  meiosis specific with OB domains  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Meiob  meiosis specific with OB domains  LOC681837  similar to holdem CG15329-PA  Data merged from RGD:1590524 1643240 APPROVED
2012-09-26 Meiob  meiosis specific with OB domains  LOC685099  similar to holdem CG15329-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC681837  similar to holdem CG15329-PA      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC685099  similar to holdem CG15329-PA      Symbol and Name status set to provisional 70820 PROVISIONAL