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Gene: Zbtb42 (zinc finger and BTB domain containing 42) Rattus norvegicus

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Symbol:

Zbtb42

Name:

zinc finger and BTB domain containing 42

RGD ID:

1582758

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in muscle organ development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome. Orthologous to human ZBTB42 (zinc finger and BTB domain containing 42); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC691556; similar to zinc finger protein 238; zinc finger and BTB domain-containing protein 42

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	137,559,622 - 137,561,750 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	137,555,304 - 137,570,261 (+)	Ensembl				GRCr8
mRatBN7.2	6	131,734,257 - 131,742,459 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	131,738,356 - 131,742,685 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	131,907,918 - 131,910,046 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	132,204,974 - 132,207,102 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	131,567,415 - 131,569,543 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	137,238,899 - 137,247,115 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	137,243,185 - 137,245,313 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	146,247,092 - 146,254,155 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	137,664,393 - 137,666,521 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	129,286,056 - 129,288,123 (+)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Lethal Congenital Contracture Syndrome 6 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4-aminobenzohydrazide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzatropine (ISO)

benzene-1,2,4-triol (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

chromium(6+) (ISO)

cisplatin (ISO)

Cuprizon (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

FR900359 (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

inulin (ISO)

iron dichloride (ISO)

lipopolysaccharide (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (ISO)

orphenadrine (EXP)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

piperonyl butoxide (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

thiram (ISO)

titanium dioxide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

muscle organ development (ISO,ISS)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

cytoplasm (IEA,ISO)

nucleoplasm (IEA,ISO,ISS)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:18262495	PMID:21193930	PMID:25055871

Genomics

Comparative Map Data

Zbtb42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	137,559,622 - 137,561,750 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	137,555,304 - 137,570,261 (+)	Ensembl				GRCr8
mRatBN7.2	6	131,734,257 - 131,742,459 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	131,738,356 - 131,742,685 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	131,907,918 - 131,910,046 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	132,204,974 - 132,207,102 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	131,567,415 - 131,569,543 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	137,238,899 - 137,247,115 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	137,243,185 - 137,245,313 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	146,247,092 - 146,254,155 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	137,664,393 - 137,666,521 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	129,286,056 - 129,288,123 (+)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

ZBTB42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	104,800,554 - 104,804,712 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	104,799,415 - 104,804,712 (+)	Ensembl			hg38	GRCh38
GRCh37	14	105,266,891 - 105,271,049 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	104,339,936 - 104,342,094 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	14	85,322,008 - 85,326,127 (+)	NCBI		Celera
Cytogenetic Map	14	q32.33	NCBI
HuRef	14	85,448,325 - 85,467,866 (+)	NCBI		HuRef
CHM1_1	14	105,204,837 - 105,208,953 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	99,043,431 - 99,047,591 (+)	NCBI		T2T-CHM13v2.0

Zbtb42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	112,645,042 - 112,649,181 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	112,645,262 - 112,649,181 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	112,678,648 - 112,682,747 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	112,678,828 - 112,682,747 (+)	Ensembl			mm10	GRCm38
MGSCv37	12	113,917,051 - 113,920,958 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	113,126,654 - 113,130,555 (+)	NCBI		MGSCv36	mm8
Celera	12	113,893,308 - 113,896,681 (+)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	61.2	NCBI

Zbtb42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955538	3,230,617 - 3,233,611 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	105,983,260 - 105,987,422 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	105,199,762 - 105,203,924 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	85,449,536 - 85,453,692 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	105,243,927 - 105,247,522 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	105,243,998 - 105,245,266 (+)	Ensembl			panPan2	panpan1.1

ZBTB42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	72,339,038 - 72,346,109 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	71,848,186 - 71,849,510 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	72,617,392 - 72,620,688 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	72,617,392 - 72,618,588 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	72,299,992 - 72,303,287 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	72,343,469 - 72,346,763 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	72,742,869 - 72,746,176 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zbtb42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	1,780,243 - 1,783,964 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936621	609,206 - 612,868 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB42
(Sus scrofa - pig)

No map positions available.

ZBTB42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	82,735,688 - 82,739,643 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	82,736,157 - 82,737,425 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	70,158,436 - 70,162,551 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb42
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	500,804 - 503,860 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zbtb42
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	130,271,844 - 130,275,781 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zbtb42
5 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	212
Count of miRNA genes:	141
Interacting mature miRNAs:	164
Transcripts:	ENSRNOT00000030879
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	112483610	147156653	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	114241077	147156653	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	110921244	147156653	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	118366855	147156653	Rat
2312560	Pur20	Proteinuria QTL 20	2.1	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	131392689	143944780	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	122236101	147156653	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	121444670	147156653	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001126302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000030879 ⟹ ENSRNOP00000035859

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	137,555,334 - 137,565,754 (+)	Ensembl
mRatBN7.2 Ensembl	6	131,738,356 - 131,742,685 (+)	Ensembl
Rnor_6.0 Ensembl	6	137,243,185 - 137,245,313 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137256 ⟹ ENSRNOP00000099234

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	137,555,304 - 137,570,261 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000145787 ⟹ ENSRNOP00000109993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	137,556,085 - 137,563,625 (+)	Ensembl

RefSeq Acc Id:

NM_001126302 ⟹ NP_001119774

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	137,559,622 - 137,561,750 (+)	NCBI
mRatBN7.2	6	131,738,529 - 131,740,657 (+)	NCBI
Rnor_6.0	6	137,243,185 - 137,245,313 (+)	NCBI
Rnor_5.0	6	146,247,092 - 146,254,155 (+)	NCBI
RGSC_v3.4	6	137,664,393 - 137,666,521 (+)	RGD
Celera	6	129,286,056 - 129,288,123 (+)	RGD

Sequence:

show sequence

GGCGCCCTCCCGGCCGGGGCGCGCCACCCGTAGCTCGGTGAGGTCCGAGCTGCACGGGAAAGCT
TGCAGAACGAGCGGAGAGCCGCGCGTGCGGCGGAGGTGATGACTGCGGCGGCATGGAGTTCCCG
GAGCACGGCGTACGGCTGCTGGGCCGCCTGAGGCAGCAGCGCGAGCTTGGGTTCCTGTGCGACT
GCACTGTCCTGGTGGGCGACGCGCGCTTCCCTGCGCACCGCGCTGTACTGGCCGCGTGCAGTGT
CTACTTCCATCTCTTCTACAGGGACCAGCCCGCGAGCAGCCGCGACACAGTGCGGCTCAACGGC
GACATCGTCACCGTACCCGCCTTCAGCCGCCTGCTGGACTTCATGTATGAGGGCCGCCTGGACC
TGCACAGCCTACCTGTCGAGGACGTCCTGGCTGCAGCCAGTTACCTACACATGTATGACATCGT
CAAGGTCTGCAAGGGCAGGCTCAGAAAGAAGGACCCAGATCTGGAGACCCGTACGCTGGGGACA
GAGCTTCCCGGGCAGACACCACACCCCCTGCCTTCCTGGCCCCCTGCCTTCTGCCAAGCCACAC
CAAAGGCCAAACCCCCATCTCTAGGGGTCAAGGCTGTCCATCCCCTGCCAAAATTCGGACCTCC
ATCTTGGCAGGTCTCAGAGGAGTCGAGTGGGGCCCTGGACCTGTCGCTGAAGCCTGGCCCAAGA
CCAGAGCAGGCCCACCCACCCTGTCTCCTCCAGACATCCCAGTGCAGCTCCATACAGCAAGGGG
CCCAGCCACTGGTGAAGGCCGAGCAAGATTCGTTCTCTGAACAAGATAGCAGCAGCCCGCAGAG
CGCGGACAGATCCCCACCACCAGTCTGTGCTTCTGCAGCCCGGGGCCTGGCAGTGAACTTGGAG
CCATTGCACATCCAAGGAACAGGCAGCCAGCAGCTTGGGCTGCATGCAGAGCCAGTGGTGGACA
GCGAAGATCTGGGTCCTGGCAGGCATCTTTGCATTTGCCCGTTGTGCTGCAAACTCTTCCCTAG
CACCCACGCACTGCAGCCGCATCTCAGCGCCCACTTCCGGGAGCGGGACAGCGTCCGTACCAGG
CTCTCCCCGGAGGGGGCCGTGCCCACGTGCCCCCTCTGCAGCAAGACCTTCTCCTGCACGTACA
CGCTGAAGAGGCATGAACGGACACACTCTGGGGAGAAGCCCTATACATGCGTGCAGTGTGGTAA
GAGCTTCCAGTACTCACACAACTTAAGCCGGCATGCTGTGGTCCACACACGGGAGAAGCCCCAT
GCCTGCCGCTGGTGTGAGCGCCGATTCACACAGTCTGGTGACCTGTATCGCCATGTCCGCAAGT
TCCACTATGGCCTCGTCAAGCCCTTGCTTGTGTGAAGTGTTTTTCTGCATCCCCGAGGTGGAGG
AAGAGCAGAGGCAGGGTCTCCCCGGATGGAACTCTGGGGCAGAGGAAGAAGCCCAGGCTACCCC
AAGGCTAGAAGGTTGCACTGGCCAACCTGAATGAATGCTGCTGCTTCTTGGATGGGTCACCTCC
TCCTCCCCTCCCCTCCACCTGACACCTGAGCAGGTTGTACCCTGCCCAGTTTAGGGATACTCTG
TCCCCACTGTCCTTCCTCTCTAGCAAGGTCCTAGAGTGCCTGGCCTGCCCGCCCATTCACTGGC
CAGTGTGAGATAATACAGTTTTCCTCTGTCCTGGGGCTAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001119774	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI61864	(Get FASTA)	NCBI Sequence Viewer
	B1WBS3	(Get FASTA)	NCBI Sequence Viewer
	EDL97421	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035859.4
	ENSRNOP00000109993

RefSeq Acc Id:

NP_001119774 ⟸ NM_001126302

- UniProtKB:

B1WBS3 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEFPEHGVRLLGRLRQQRELGFLCDCTVLVGDARFPAHRAVLAACSVYFHLFYRDQPASSRDTV
RLNGDIVTVPAFSRLLDFMYEGRLDLHSLPVEDVLAAASYLHMYDIVKVCKGRLRKKDPDLETR
TLGTELPGQTPHPLPSWPPAFCQATPKAKPPSLGVKAVHPLPKFGPPSWQVSEESSGALDLSLK
PGPRPEQAHPPCLLQTSQCSSIQQGAQPLVKAEQDSFSEQDSSSPQSADRSPPPVCASAARGLA
VNLEPLHIQGTGSQQLGLHAEPVVDSEDLGPGRHLCICPLCCKLFPSTHALQPHLSAHFRERDS
VRTRLSPEGAVPTCPLCSKTFSCTYTLKRHERTHSGEKPYTCVQCGKSFQYSHNLSRHAVVHTR
EKPHACRWCERRFTQSGDLYRHVRKFHYGLVKPLLV

hide sequence

Ensembl Acc Id:

ENSRNOP00000035859 ⟸ ENSRNOT00000030879

Ensembl Acc Id:

ENSRNOP00000109993 ⟸ ENSRNOT00000145787

Ensembl Acc Id:

ENSRNOP00000099234 ⟸ ENSRNOT00000137256

Protein Domains

BTB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B1WBS3-F1-model_v2	AlphaFold	B1WBS3	1-420	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694853

Promoter ID:

EPDNEW_R5376

Type:

multiple initiation site

Name:

Zbtb42_1

Description:

zinc finger and BTB domain containing 42

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	137,243,152 - 137,243,212	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1582758	AgrOrtholog
BioCyc Gene	G2FUF-35780	BioCyc
Ensembl Genes	ENSRNOG00000037562	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000030879.5	UniProtKB/Swiss-Prot
	ENSRNOT00000145787	ENTREZGENE
Gene3D-CATH	Classic Zinc Finger	UniProtKB/Swiss-Prot
	Potassium Channel Kv1.1, Chain A	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7099191	IMAGE-MGC_LOAD
InterPro	BTB/POZ_dom	UniProtKB/Swiss-Prot
	SKP1/BTB/POZ_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_type	UniProtKB/Swiss-Prot
KEGG Report	rno:691556	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:187402	IMAGE-MGC_LOAD
NCBI Gene	691556	ENTREZGENE
PANTHER	ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 42	UniProtKB/Swiss-Prot
	ZINC FINGER PROTEIN	UniProtKB/Swiss-Prot
Pfam	BTB	UniProtKB/Swiss-Prot
	zf-C2H2	UniProtKB/Swiss-Prot
	zf-C2H2_4	UniProtKB/Swiss-Prot
PhenoGen	Zbtb42	PhenoGen
PROSITE	BTB	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000037562	RatGTEx
SMART	BTB	UniProtKB/Swiss-Prot
	ZnF_C2H2	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54695	UniProtKB/Swiss-Prot
	SSF57667	UniProtKB/Swiss-Prot
UniProt	B1WBS3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-01-12	Zbtb42	zinc finger and BTB domain containing 42	LOC691556	similar to zinc finger protein 238	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC691556	similar to zinc finger protein 238	LOC686182	similar to zinc finger protein 238	Data merged from RGD:1585420	1643240	APPROVED
2006-11-19	LOC691556	similar to zinc finger protein 238			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC686182	similar to zinc finger protein 238			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM