Defb43 (defensin beta 43) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Defb43 (defensin beta 43) Rattus norvegicus
Analyze
Symbol: Defb43
Name: defensin beta 43
RGD ID: 1566384
Description: Predicted to be involved in several processes, including cellular response to lipoteichoic acid; defense response to symbiont; and positive regulation of cytokine production. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to several human genes including DEFB131A (defensin beta 131A); INTERACTS WITH 1,2-dimethylhydrazine; bisphenol A; Cuprizon.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BD-43; beta-defensin 43; defensin, beta 43
RGD Orthologs
Human
Mouse
Bonobo
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81541,447,875 - 41,452,769 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1541,447,875 - 41,452,769 (+)EnsemblGRCr8
mRatBN7.21537,271,888 - 37,276,782 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,272,008 - 37,276,626 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1539,137,093 - 39,141,688 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,287,903 - 40,292,498 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01538,732,646 - 38,737,264 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01546,196,771 - 46,201,271 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1546,196,771 - 46,201,271 (+)Ensemblrn6Rnor6.0
Rnor_5.01549,962,715 - 49,967,215 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41542,284,921 - 42,290,899 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1536,957,714 - 36,962,160 (+)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16033865   PMID:26649771  


Genomics

Comparative Map Data
Defb43
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81541,447,875 - 41,452,769 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1541,447,875 - 41,452,769 (+)EnsemblGRCr8
mRatBN7.21537,271,888 - 37,276,782 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,272,008 - 37,276,626 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1539,137,093 - 39,141,688 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,287,903 - 40,292,498 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01538,732,646 - 38,737,264 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01546,196,771 - 46,201,271 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1546,196,771 - 46,201,271 (+)Ensemblrn6Rnor6.0
Rnor_5.01549,962,715 - 49,967,215 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41542,284,921 - 42,290,899 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1536,957,714 - 36,962,160 (+)NCBICelera
Cytogenetic Map15p12NCBI
DEFB131A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3849,444,414 - 9,450,666 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl49,444,414 - 9,450,666 (+)Ensemblhg38GRCh38
GRCh3749,446,140 - 9,452,392 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3649,055,358 - 9,061,338 (+)NCBIBuild 36Build 36hg18NCBI36
Celera49,950,821 - 9,956,935 (+)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef48,801,571 - 8,807,685 (+)NCBIHuRef
CHM1_149,444,242 - 9,450,356 (+)NCBICHM1_1
T2T-CHM13v2.049,464,954 - 9,471,340 (+)NCBIT2T-CHM13v2.0
Defb43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391463,249,220 - 63,255,537 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1463,249,220 - 63,255,537 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381463,011,771 - 63,018,088 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,011,771 - 63,018,088 (+)Ensemblmm10GRCm38
MGSCv371463,630,608 - 63,636,925 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361461,965,881 - 61,972,198 (+)NCBIMGSCv36mm8
Celera1460,772,021 - 60,778,338 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.23NCBI
DEFB131A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v239,738,918 - 9,745,567 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan149,947,293 - 9,953,942 (+)NCBINHGRI_mPanPan1
CBD131
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12525,887,535 - 25,904,480 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2525,887,535 - 25,904,355 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2526,544,623 - 26,561,562 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02526,054,983 - 26,072,002 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2526,054,983 - 26,071,877 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12525,987,302 - 26,004,248 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02525,891,671 - 25,908,859 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02526,042,908 - 26,059,835 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0

Variants

.
Variants in Defb43
10 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:75
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000059212
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
reproductive system
1 1 6

Sequence


Ensembl Acc Id: ENSRNOT00000059212   ⟹   ENSRNOP00000055982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1541,447,875 - 41,452,769 (+)Ensembl
mRatBN7.2 Ensembl1537,272,008 - 37,276,626 (+)Ensembl
Rnor_6.0 Ensembl1546,196,771 - 46,201,271 (+)Ensembl
RefSeq Acc Id: NM_001037528   ⟹   NP_001032617
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81541,447,875 - 41,452,769 (+)NCBI
mRatBN7.21537,271,888 - 37,276,782 (+)NCBI
Rnor_6.01546,196,771 - 46,201,271 (+)NCBI
Rnor_5.01549,962,715 - 49,967,215 (+)NCBI
RGSC_v3.41542,284,921 - 42,290,899 (+)RGD
Celera1536,957,714 - 36,962,160 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001032617 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAT51909 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000055982
  ENSRNOP00000055982.1
GenBank Protein Q32ZF3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001032617   ⟸   NM_001037528
- Peptide Label: precursor
- UniProtKB: Q32ZF3 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000055982   ⟸   ENSRNOT00000059212

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q32ZF3-F1-model_v2 AlphaFold Q32ZF3 1-70 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566384 AgrOrtholog
BioCyc Gene G2FUF-13441 BioCyc
Ensembl Genes ENSRNOG00000038759 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000059212 ENTREZGENE
  ENSRNOT00000059212.2 UniProtKB/Swiss-Prot
InterPro Beta_defensin UniProtKB/Swiss-Prot
KEGG Report rno:641651 UniProtKB/Swiss-Prot
NCBI Gene 641651 ENTREZGENE
PANTHER BETA-DEFENSIN 131A UniProtKB/Swiss-Prot
  BETA-DEFENSIN 131A UniProtKB/Swiss-Prot
Pfam Defensin_beta_2 UniProtKB/Swiss-Prot
PhenoGen Defb43 PhenoGen
RatGTEx ENSRNOG00000038759 RatGTEx
UniProt DFB43_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-11-07 Defb43  defensin beta 43    beta-defensin 43  Name updated 1299863 APPROVED
2006-02-09 Defb43  beta-defensin 43      Symbol and Name status set to provisional 70820 PROVISIONAL