Mmgt1 (membrane magnesium transporter 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Mmgt1 (membrane magnesium transporter 1) Rattus norvegicus
Analyze
Symbol: Mmgt1
Name: membrane magnesium transporter 1
RGD ID: 1566339
Description: Predicted to enable cobalt ion transmembrane transporter activity; ferrous iron transmembrane transporter activity; and magnesium ion transmembrane transporter activity. Predicted to contribute to membrane insertase activity. Predicted to be involved in magnesium ion transport; protein insertion into ER membrane by stop-transfer membrane-anchor sequence; and tail-anchored membrane protein insertion into ER membrane. Predicted to act upstream of or within cobalt ion transport; copper ion transport; and iron ion transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of EMC complex. Predicted to be active in Golgi apparatus; early endosome; and plasma membrane. Orthologous to human MMGT1 (membrane magnesium transporter 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ER membrane protein complex subunit 5; LOC302864; RGD1566339; similar to transmembrane protein 32; Tmem32; transmembrane protein 32
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X139,445,834 - 139,458,169 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX139,445,834 - 139,458,169 (-)EnsemblGRCr8
mRatBN7.2X134,408,463 - 134,420,798 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX134,408,466 - 134,420,729 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX136,605,407 - 136,617,742 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X140,159,968 - 140,172,303 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X137,729,350 - 137,741,685 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X158,966,694 - 158,978,995 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX158,966,673 - 158,978,995 (-)Ensemblrn6Rnor6.0
Rnor_5.0X153,597,936 - 153,610,237 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X141,123,953 - 141,136,288 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX142,458,978 - 142,471,313 (-)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
early endosome  (IBA,IEA,ISO,ISS)
early endosome membrane  (IEA)
EMC complex  (IBA,IEA,ISO,ISS)
endoplasmic reticulum membrane  (IEA,ISO,ISS)
Golgi apparatus  (IBA,IEA,ISO,ISS)
Golgi membrane  (IEA)
membrane  (IEA,ISO,ISS)
plasma membrane  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18057121   PMID:19946888   PMID:22119785  


Genomics

Comparative Map Data
Mmgt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X139,445,834 - 139,458,169 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX139,445,834 - 139,458,169 (-)EnsemblGRCr8
mRatBN7.2X134,408,463 - 134,420,798 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX134,408,466 - 134,420,729 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX136,605,407 - 136,617,742 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X140,159,968 - 140,172,303 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X137,729,350 - 137,741,685 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X158,966,694 - 158,978,995 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX158,966,673 - 158,978,995 (-)Ensemblrn6Rnor6.0
Rnor_5.0X153,597,936 - 153,610,237 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X141,123,953 - 141,136,288 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX142,458,978 - 142,471,313 (-)NCBICelera
Cytogenetic MapXq36NCBI
MMGT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X135,960,588 - 135,973,988 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX135,960,588 - 135,974,029 (-)Ensemblhg38GRCh38
GRCh37X135,042,747 - 135,056,147 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X134,871,897 - 134,883,800 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X134,769,750 - 134,781,654NCBI
CeleraX135,404,702 - 135,416,609 (-)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX124,318,172 - 124,329,831 (-)NCBIHuRef
CHM1_1X134,955,293 - 134,967,204 (-)NCBICHM1_1
T2T-CHM13v2.0X134,269,310 - 134,282,721 (-)NCBIT2T-CHM13v2.0
Mmgt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X55,630,872 - 55,643,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX55,630,872 - 55,643,429 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X56,585,512 - 56,597,944 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX56,585,512 - 56,598,069 (-)Ensemblmm10GRCm38
MGSCv37X53,838,689 - 53,851,096 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X52,932,296 - 52,944,703 (-)NCBIMGSCv36mm8
CeleraX43,067,520 - 43,079,927 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX30.06NCBI
Mmgt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554899,086,506 - 9,096,746 (+)Ensembl
ChiLan1.0NW_0049554899,086,494 - 9,133,374 (+)NCBIChiLan1.0ChiLan1.0
MMGT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X135,375,314 - 135,387,480 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X135,378,913 - 135,391,079 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X125,086,169 - 125,098,878 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X135,354,785 - 135,366,838 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX135,354,785 - 135,366,836 (-)EnsemblpanPan2panpan1.1
MMGT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X106,388,286 - 106,399,166 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX92,208,405 - 92,219,240 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X108,365,094 - 108,375,929 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX108,363,610 - 108,376,441 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X105,502,517 - 105,513,352 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X107,686,189 - 107,697,025 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X107,334,890 - 107,345,725 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mmgt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X104,375,461 - 104,385,288 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651311,229,506 - 11,239,525 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493651311,229,354 - 11,239,152 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMGT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX111,144,233 - 111,158,335 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X111,145,712 - 111,158,298 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X127,067,831 - 127,080,417 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MMGT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X110,976,376 - 110,986,917 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606548,640,974 - 48,652,825 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mmgt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480811,174,966 - 11,196,288 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mmgt1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X116,607,484 - 116,618,348 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mmgt1
28 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:25
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000001179
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X120028026141353710Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X120028026141353710Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat

Markers in Region
RH139598  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X134,408,587 - 134,408,776 (+)MAPPERmRatBN7.2
mRatBN7.21223,365,706 - 223,365,895 (+)MAPPERmRatBN7.2
Rnor_6.01243,712,210 - 243,712,398NCBIRnor6.0
Rnor_6.0X158,966,819 - 158,967,007NCBIRnor6.0
Rnor_5.01250,968,338 - 250,968,526UniSTSRnor5.0
Rnor_5.0X153,598,061 - 153,598,249UniSTSRnor5.0
RGSC_v3.41229,158,926 - 229,159,114UniSTSRGSC3.4
RGSC_v3.4X141,124,078 - 141,124,266UniSTSRGSC3.4
CeleraX142,459,103 - 142,459,291UniSTS
Celera1220,565,742 - 220,565,930UniSTS
Cytogenetic MapXq36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001179   ⟹   ENSRNOP00000001179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX158,966,673 - 158,978,995 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102610   ⟹   ENSRNOP00000096751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX139,445,834 - 139,456,045 (-)Ensembl
mRatBN7.2 EnsemblX134,408,466 - 134,418,674 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108706   ⟹   ENSRNOP00000093526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX139,445,834 - 139,458,169 (-)Ensembl
mRatBN7.2 EnsemblX134,408,466 - 134,420,729 (-)Ensembl
RefSeq Acc Id: NM_001106970   ⟹   NP_001100440
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X139,445,834 - 139,458,169 (-)NCBI
mRatBN7.2X134,408,463 - 134,420,798 (-)NCBI
Rnor_6.0X158,966,694 - 158,978,995 (-)NCBI
Rnor_5.0X153,597,936 - 153,610,237 (-)NCBI
RGSC_v3.4X141,123,953 - 141,136,288 (-)RGD
CeleraX142,458,978 - 142,471,313 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001100440 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI68927 (Get FASTA)   NCBI Sequence Viewer  
  B5DF51 (Get FASTA)   NCBI Sequence Viewer  
  EDL75147 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000093526
  ENSRNOP00000093526.1
RefSeq Acc Id: NP_001100440   ⟸   NM_001106970
- UniProtKB: B5DF51 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001179   ⟸   ENSRNOT00000001179
Ensembl Acc Id: ENSRNOP00000096751   ⟸   ENSRNOT00000102610
Ensembl Acc Id: ENSRNOP00000093526   ⟸   ENSRNOT00000108706

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DF51-F1-model_v2 AlphaFold B5DF51 1-131 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702067
Promoter ID:EPDNEW_R12591
Type:multiple initiation site
Name:Mmgt1_1
Description:membrane magnesium transporter 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X158,978,939 - 158,978,999EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566339 AgrOrtholog
BioCyc Gene G2FUF-920 BioCyc
Ensembl Genes ENSRNOG00000000881 Ensembl
  ENSRNOG00000065883 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000108706 ENTREZGENE
  ENSRNOT00000108706.1 UniProtKB/Swiss-Prot
InterPro Magnesium_transport UniProtKB/Swiss-Prot
KEGG Report rno:302864 UniProtKB/Swiss-Prot
NCBI Gene 302864 ENTREZGENE
PANTHER ER MEMBRANE PROTEIN COMPLEX SUBUNIT 5 UniProtKB/Swiss-Prot
  PTHR21181 UniProtKB/Swiss-Prot
Pfam MMgT UniProtKB/Swiss-Prot
PhenoGen Mmgt1 PhenoGen
RatGTEx ENSRNOG00000000881 RatGTEx
  ENSRNOG00000065883 RatGTEx
UniProt A0A8I6ATW4_RAT UniProtKB/TrEMBL
  B5DF51 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-05 Mmgt1  membrane magnesium transporter 1  Tmem32  transmembrane protein 32  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tmem32  transmembrane protein 32   Tmem32_predicted  transmembrane protein 32 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Tmem32_predicted  transmembrane protein 32 (predicted)  RGD1566339_predicted  similar to transmembrane protein 32 (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1566339_predicted  similar to transmembrane protein 32 (predicted)  LOC302864  similar to transmembrane protein 32  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302864  similar to transmembrane protein 32      Symbol and Name status set to provisional 70820 PROVISIONAL