Advanced Search (OLGA)

Gene: Slc60a1 (solute carrier family 60 member 1) Rattus norvegicus

Analyze

Symbol:

Slc60a1 (Ensembl: Mfsd4a)

Name:

solute carrier family 60 member 1 (Ensembl:major facilitator superfamily domain containing 4A)

RGD ID:

1566090

Description:

Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Orthologous to human MFSD4A (major facilitator superfamily domain containing 4A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC498228; major facilitator superfamily domain containing 4; major facilitator superfamily domain containing 4A; major facilitator superfamily domain-containing protein 4; major facilitator superfamily domain-containing protein 4A; Mfsd4; Mfsd4a; RGD1566090; similar to hypothetical protein DKFZp761N1114

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC60A1 (solute carrier family 60 member 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Mfsd4a (major facilitator superfamily domain containing 4A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc60a1 (solute carrier family 60 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC60A1 (solute carrier family 60 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MFSD4A (major facilitator superfamily domain containing 4A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc60a1 (solute carrier family 60 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MFSD4A (major facilitator superfamily domain containing 4A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC60A1 (solute carrier family 60 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc60a1 (solute carrier family 60 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Slc60a1 (solute carrier family 60 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MYO18B (myosin XVIIIB)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SLC60A1 (solute carrier family 60 member 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mfsd4a (major facilitator superfamily domain containing 4A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	dct-15	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	dct-15	Alliance	DIOPT (Hieranoid\|OMA)
Danio rerio (zebrafish):	mfsd4aa	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mfsd4ab	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mfsd4a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	46,015,321 - 46,062,633 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	46,021,659 - 46,062,633 (-)	Ensembl				GRCr8
mRatBN7.2	13	43,469,488 - 43,510,467 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,469,488 - 43,510,467 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	46,076,334 - 46,117,632 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,364,484 - 47,405,774 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	44,625,349 - 44,666,376 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,807,720 - 48,848,997 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,807,720 - 48,848,997 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	53,877,464 - 53,918,741 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	44,908,580 - 44,949,556 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	43,806,794 - 43,848,023 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cholangiocarcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

dibutyl phthalate (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

furan (EXP)

genistein (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

methyl methanesulfonate (ISO)

N-acetyl-1,4-benzoquinone imine (ISO)

nickel atom (ISO)

okadaic acid (ISO)

paracetamol (EXP)

paraquat (ISO)

PCB138 (ISO)

pirinixic acid (ISO)

propanal (ISO)

resveratrol (ISO)

rotenone (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium fluoride (ISO)

trichloroethene (EXP)

triclosan (ISO)

uranium atom (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

transmembrane transport (IEA)

Cellular Component

membrane (IEA)

Molecular Function

transmembrane transporter activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Identification of key genes and pathways associated with cholangiocarcinoma development based on weighted gene correlation network analysis.	Liu J, etal., PeerJ. 2019 Oct 31;7:e7968. doi: 10.7717/peerj.7968. eCollection 2019.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Slc60a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	46,015,321 - 46,062,633 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	46,021,659 - 46,062,633 (-)	Ensembl				GRCr8
mRatBN7.2	13	43,469,488 - 43,510,467 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,469,488 - 43,510,467 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	46,076,334 - 46,117,632 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,364,484 - 47,405,774 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	44,625,349 - 44,666,376 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,807,720 - 48,848,997 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,807,720 - 48,848,997 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	53,877,464 - 53,918,741 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	44,908,580 - 44,949,556 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	43,806,794 - 43,848,023 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

SLC60A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	205,569,014 - 205,602,918 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	205,568,833 - 205,602,918 (+)	Ensembl			hg38	GRCh38
GRCh37	1	205,538,142 - 205,572,046 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	203,804,785 - 203,837,960 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	178,673,289 - 178,707,766 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	176,714,441 - 176,737,884 (+)	NCBI		HuRef
CHM1_1	1	206,961,383 - 206,995,329 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	204,833,559 - 204,867,476 (+)	NCBI		T2T-CHM13v2.0

Mfsd4a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	131,947,543 - 131,997,400 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	131,950,544 - 131,995,800 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	132,022,806 - 132,069,658 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	132,022,806 - 132,068,062 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	133,923,198 - 133,964,639 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	133,864,330 - 133,895,479 (-)	NCBI		MGSCv36	mm8
Celera	1	134,630,841 - 134,672,225 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	57.24	NCBI

Slc60a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	41,286,679 - 41,322,158 (+)	Ensembl
ChiLan1.0	NW_004955406	41,286,679 - 41,315,666 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC60A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	43,767,316 - 43,801,231 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	43,732,645 - 43,766,559 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	181,177,517 - 181,211,432 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	185,474,032 - 185,497,408 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	185,474,032 - 185,497,408 (+)	Ensembl			panPan2	panpan1.1

MFSD4A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	2,037,365 - 2,066,822 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	2,037,026 - 2,064,696 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	2,130,526 - 2,159,959 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	2,034,209 - 2,063,691 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	2,034,196 - 2,063,691 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	2,029,526 - 2,058,956 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	2,421,039 - 2,450,502 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	2,621,246 - 2,650,726 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc60a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	69,583,387 - 69,612,258 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	6,823,597 - 6,842,741 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	6,823,771 - 6,852,534 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MFSD4A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	66,249,678 - 66,288,338 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	66,249,434 - 66,292,482 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	72,513,292 - 72,552,673 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC60A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	23,740,916 - 23,774,514 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	23,743,360 - 23,774,451 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	24,439,913 - 24,473,523 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc60a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	5,627,194 - 5,655,222 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624807	5,627,734 - 5,655,218 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc60a1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	3,777,274 - 3,816,524 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slc60a1
176 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	493
Count of miRNA genes:	253
Interacting mature miRNAs:	306
Transcripts:	ENSRNOT00000068003
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	43736327	47969993	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
4145117	Mcs27	Mammary carcinoma susceptibility QTL 27		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	13	45990077	50392939	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

RH131651

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,474,498 - 43,474,680 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,812,731 - 48,812,912	NCBI	Rnor6.0
Rnor_5.0	13	53,882,475 - 53,882,656	UniSTS	Rnor5.0
RGSC_v3.4	13	44,913,591 - 44,913,772	UniSTS	RGSC3.4
Celera	13	43,811,809 - 43,811,990	UniSTS
Cytogenetic Map	13	q13	UniSTS

RH134078

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,479,917 - 43,480,110 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,818,148 - 48,818,340	NCBI	Rnor6.0
Rnor_5.0	13	53,887,892 - 53,888,084	UniSTS	Rnor5.0
RGSC_v3.4	13	44,919,008 - 44,919,200	UniSTS	RGSC3.4
Celera	13	43,817,226 - 43,817,418	UniSTS
RH 3.4 Map	13	113.2	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	9	59	143	58	57	26	92	26	6	312	182	11	122	81	81	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000068003 ⟹ ENSRNOP00000061845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	46,021,659 - 46,062,633 (-)	Ensembl
mRatBN7.2 Ensembl	13	43,469,488 - 43,510,467 (-)	Ensembl
Rnor_6.0 Ensembl	13	48,807,720 - 48,848,997 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077857 ⟹ ENSRNOP00000073892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	46,033,254 - 46,062,633 (-)	Ensembl
mRatBN7.2 Ensembl	13	43,479,771 - 43,510,467 (-)	Ensembl
Rnor_6.0 Ensembl	13	48,819,845 - 48,848,864 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100615 ⟹ ENSRNOP00000087008

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	46,035,679 - 46,062,633 (-)	Ensembl
mRatBN7.2 Ensembl	13	43,479,771 - 43,510,467 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120137 ⟹ ENSRNOP00000096886

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	46,032,981 - 46,062,633 (-)	Ensembl
mRatBN7.2 Ensembl	13	43,479,771 - 43,510,467 (-)	Ensembl

RefSeq Acc Id:

NM_001109069 ⟹ NP_001102539

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,021,659 - 46,062,633 (-)	NCBI
mRatBN7.2	13	43,469,488 - 43,510,467 (-)	NCBI
Rnor_6.0	13	48,807,720 - 48,848,997 (-)	NCBI
Rnor_5.0	13	53,877,464 - 53,918,741 (-)	NCBI
RGSC_v3.4	13	44,908,580 - 44,949,556 (-)	RGD
Celera	13	43,806,794 - 43,848,023 (-)	RGD

Sequence:

show sequence

GTCCCCGCGGCGGGACACGTGCGTCCGCGACGCCCCGGACCTCCAGGCGTCCCCGCGCTGGCCG
AGGGCGGGGCAGCCGCGCGGCACTCCCCTCCTCTCTTCTCCTCCCCGCCCGGCCTCCGGTTGGC
CGCCGCACTCGGCCCAGGGCTCGCTGTGAGCTGCCGGCCGAGCCATGGGCTGCGACGGTCGGGT
GTCAGGGCTGCTCCGCCGCAACCTACAGCCCACGCTCACCTACTGGAGCGTCTTCTTCAGCTTC
GGCCTGTGCATCGCCTTCCTGGGGCCCACGCTGCTGGACCTGCGCTGCCAGACGCACAGCTCTC
TGCCCCAGATCTCCTGGGTCTTCTTCTCGCAGCAGCTCTGCCTCCTGCTGGGTAGCGCCCTCGG
GGGTGTCTTCAAGAGGACCCTGGCCCAATCATTATGGGCTCTCTTCACCTCTACCCTGGTCATC
TCCCTGGTGTTTGCTGTCATCCCCCTCTGCCATGATGTGACGGTATTGGCCTCGGTCATAGCGC
TGGCGGGCCTAGCCATGGGCTGCATCGACACCGTGGCCAACATGCAGTTGGTGAGGATATACCA
GAAGGACTCGGCCTTCTTCCTTCAGGTCCTTCATTTCTTCGTGGGCCTTGGTGCTCTGCTGAGC
CCCCTGATCGCTGATCCCTTCCTGTCAGAGGCCAACTGCTTTCCTGCTAATAACACAGCCAATG
CCACCTCCAGAAGCCATGTATCCCGGGTCCTAAGCCAACATCATGCAGCAGCCCAGCCTTGGAT
GAACCAGACGATCCCCAGGCCGCCCCCAAAGGATGTGACCGAGAACCACGTATCCTATGCTTTC
TGGATCATGGCTCTCATCAATCTCCCAGTGCCTCTGGCTGTTCTATTCCTGCTGTCGAAGGAGC
GGCTGCTGACCTGCTCCCAGAGGAAGCCCCTGCTCCTGTCTGCAGACGAGCTTGCACTGGAGAC
CCGGCCTGCTGAAAAGGAAGACACTTCCTCACTTGCTCACAAGTTTCAGCCACACCCAGGGCAG
GAGGACCTGTTCAGCTGCTGCCAGAGGAAGAACTTCCGGGGAGCCCCGTGCTCTTTCTTCGCCA
TCCACATCACAGCCGCTCTGGTCCTGTTCATGACAGACGGGATGATGGGCGCTTATTCAGCCTT
TGTGTACAGCTATGCTGTGGAGAAGCCGCTCTCTATTGGACACAAGTCAGCTGGTTACCTCCCT
AGCCTCTTCTGGGGTTTCATCACTCTGGGCCGATTCATCTCCATCCCAGTCTCCTCAAGAATGA
GGCCAGCCACCATGGTGTTCATCAATGTGGTGGGAGTGGTGGTGACATTCCTCCTGATGCTTAT
CCTCTCCTACAATGTCAACTTCCTGTTTGTGGGGACAGCAAGCCTGGGGCTGTTTCTGAGTAGC
ACCTTCCCCAGTATGCTTGCCTACACCGAGGACATCCTCCAGTATAAAGGTTGTGCGACCACGG
TGCTGGTGACTGGGGCAGGAATTGGTGAGATGGTCCTGCAGATGCTGGTTGGCTTGATCTTTCA
GGCCCAGGGCACTTACAGTTTCCTCGTCTGTGGCGTGATCTTTGGCTGCCTGGCTTTTATCTTC
TACATCTTGCTCCTGTTTTTCCACAGGATACATCCTGAACTCTCATCAGGTGAAAACATGACTC
TGATAGTGACAGGTTCCAAAGAGCACGGGACACACCATCACCCATGAGCATCCCCGCCCCAAGA
TGGAAATGGCACCTTCGGTAAGTGGTTCTGATATCTAAGAGAAACACTGGGGCAGTGCTGCTCT
GAAAACAGCAGGCCTAGAAGACTGATGAAATGCTTGCCACAGAAGCTGGCCTCTGCGAGAGTGT
CTGCCAGAAGGAACGGTACTGTGGGTTGAACACTCTGCTGCTCAAATCCATTTTAGAAACCTTC
AGACAACAGAAGGCAGTGTCAACACCTGAGTCTTGCTGTTTGGGAACTCACTCTGAGCCCAGGT
TTCTGCTCAGGTCTGCACTTGTCTCGACACCTATCCATGACAAAGAATACCATGGTGGCATAAC
GCCCAGTTTTTGGCACAGGCAAATGACACATATGTAGTAAACAGGTGATAGTGAGAATAAGCCA
TCAAGTAAACTATCCCTTCAGGCTTAGCAATCCAGCCAGAGAGCAGAAGCTGGTGTATATTCTA
GCATAAAGTAACTTCGTGTAATTATGAGGCTGTTTGTAAAGATAAGGCCAAAGACGTTTGCAAA
GACCATAAGAATAACAATGTCACTTGTGTGTGATACAGACATGAAAAGGAACAGGCTGTCAGGG
TGTGCAGAAGTCTAGGAGGCACTGGGGCACAAATCCCCATGAAAAAGAATTAACAGGAAATTTG
AAAAACTATGACAAGGCTCCCAGAGAATGTCAAGGCTTTTTTAGAACTCCCCCTCCCCCACCCA
TCTCTGTCTCTGACACTCATGCACTCACACTCAGTCTCTCTCCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCACGCACACACACACACACACACACACACACACACACACACACACGTATTTTTGGGAA
TCAAACAAGCTCCGCCATGTTGTCAGTGATTTAGGGGAGTGTTTACTTCTAGGCGCGAGGCCAC
TTGCTACCCAGCACTTATTTCTTTTGCTAACGCTTCCCGTTTTGTATGTTACAGTAGAGCGTGC
ATGTCCCTTTAGTAAGGTGATACAGGTCAATTTTTTGAGAGAAATTTCTATGTTGAAAAACTTT
CACTGTGCTAAATACAGCAGGTCACATTCATAATCTCAGTACTTAGGATGCCAAGGCAGGAGGA
CTGCGGAGAGTTTGAGGCCAGCCTAAACTACAGGTCTAGTCTCAGAAAAAACAAAAAGAAAGAA
AAGAAACAACAACAACAAAACTTTTCCTGATCAAGGTGTGTGTTCCAAAAGATTGACTGCTCTT
CTGCAATTTCACTGAGGGGCTCAATGCGACGTTCAGAATGTTAAAATTGGAGGCCACAGTAACA
GAGTACTGGAACTCACACAGCGTAAGACCAGGGTGGCTCTTATAGGTGACATTATGCCATGAAC
ACCAAGCCTCTGGTATATCTGCCAGTCTCTCCTGCCTTTTTGATTTCTAGGATGGTATATAAAT
ACACAAAGAATCTTCCAGTTTAAGAATAAAAGGCTAGTCAGTACTCCGTACAAATTCATGGACT
TACTTTCTCTACAAATTTGAAGAAACAGCCAGACCTGGTGGCCCACACTTGCAAATGTCAGCAT
TTGGGATTCAGTTCATAGCCCGGTTGGAGACAGAAAAATCCTATCTCAAAAACAAAAACAAACA
AAAAAACATAGTGG

hide sequence

RefSeq Acc Id:

XM_006249791 ⟹ XP_006249853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,031,923 - 46,062,628 (-)	NCBI
mRatBN7.2	13	43,479,754 - 43,510,462 (-)	NCBI
Rnor_6.0	13	48,817,980 - 48,848,992 (-)	NCBI
Rnor_5.0	13	53,877,464 - 53,918,741 (-)	NCBI

Sequence:

show sequence

CGCGGCGGGACACGTGCGTCCGCGACGCCCCGGACCTCCAGGCGTCCCCGCGCTGGCCGAGGGC
GGGGCAGCCGCGCGGCACTCCCCTCCTCTCTTCTCCTCCCCGCCCGGCCTCCGGTTGGCCGCCG
CACTCGGCCCAGGGCTCGCTGTGAGCTGCCGGCCGAGCCATGGGCTGCGACGGTCGGGTGTCAG
GGCTGCTCCGCCGCAACCTACAGCCCACGCTCACCTACTGGAGCGTCTTCTTCAGCTTCGGCCT
GTGCATCGCCTTCCTGGGGCCCACGCTGCTGGACCTGCGCTGCCAGACGCACAGCTCTCTGCCC
CAGATCTCCTGGGTCTTCTTCTCGCAGCAGCTCTGCCTCCTGCTGGGTAGCGCCCTCGGGGGTG
TCTTCAAGAGGACCCTGGCCCAATCATTATGGGCTCTCTTCACCTCTACCCTGGTCATCTCCCT
GGTGTTTGCTGTCATCCCCCTCTGCCATGATGTGACGGTATTGGCCTCGGTCATAGCGCTGGCG
GGCCTAGCCATGGGCTGCATCGACACCGTGGCCAACATGCAGTTGGTGAGGATATACCAGAAGG
ACTCGGCCTTCTTCCTTCAGGTCCTTCATTTCTTCGTGGGCCTTGGTGCTCTGCTGAGCCCCCT
GATCGCTGATCCCTTCCTGTCAGAGGCCAACTGCTTTCCTGCTAATAACACAGCCAATGCCACC
TCCAGAAGCCATGTATCCCGGGTCCTAAGCCAACATCATGCAGCAGCCCAGCCTTGGATGAACC
AGACGATCCCCAGGCCGCCCCCAAAGGATGTGACCGAGAACCACGTATCCTATGCTTTCTGGAT
CATGGCTCTCATCAATCTCCCAGTGCCTCTGGCTGTTCTATTCCTGCTGTCGAAGGAGCGGCTG
CTGACCTGCTCCCAGAGGAAGCCCCTGCTCCTGTCTGCAGACGAGCTTGCACTGGAGACCCGGC
CTGCTGAAAAGGAAGACACTTCCTCACTTGCTCACAAGTTTCAGCCACACCCAGGGCAGGAGGA
CCTGTTCAGCTGCTGCCAGAGGAAGAACTTCCGGGGAGCCCCGTGCTCTTTCTTCGCCATCCAC
ATCACAGCCGCTCTGGTCCTGTTCATGACAGACGGGATGATGGGCGCTTATTCAGCCTTTGTGT
ACAGCTATGCTGTGGAGAAGCCGCTCTCTATTGGACACAAGTCAGCTGGTTACCTCCCTAGCCT
CTTCTGGGGTTTCATCACTCTGGGCCGATTCATCTCCATCCCAGTCTCCTCAAGAATGAGGCCA
GCCACCATGGTGTTCATCAATGTGGTGGGAGTGGTGGTGACATTCCTCCTGATGCTTATCCTCT
CCTACAATGTCAACTTCCTGTTTGTGGGGACAGCAAGCCTGGGGCTGTTTCTGAGTAGCACCTT
CCCCAGTATGCTTGCCTACACCGAGGACATCCTCCAGTATAAAGGTTGTGCGACCACGGTGCTG
GTGACTGGGGCAGGAATTGGTGAGATGGTCCTGCAGATGCTGGTTGGCTTGATCTTTCAGGCCC
AGGGCACTTACAGTTTCCTCGTCTGTGGCGTGATCTTTGGCTGCCTGGCTTTTATCTTCTACAT
CTTGCTCCTGTTTTTCCACAGGATACATCCTGAACTCTCATCAGTTCTTACCCAAGACAAAGCC
CTCGGTATGGAGAACTCTGACTGCTACCAGAGGTGAAGAGCTCAGCTTCTGGGCAACAGGGTGA
CCAGACTGACACAGGAAGCCAGGGTCCTACGGGAGGCTTCTCTTGCCACCTTGTTTGTGTCTTC
CGTCCCTGAGTCTTCCCTGGACAAATCCAGCACCTGCCTGACACTTTAGCTGTCTTCCTCTCTG
GTTCGGACTTCTCCCTGACAACCAGATGGGAGGATGAAAGACAGCCCTCACGCCTCTCCACACG
CCACCCCGAGCATGGGCTAAACTCTGCATTTGAGATCACGTTTAGTTGAGGTTTAAGAAACATA
CTAAAATCATGTCATTAATCATTGCTAGGTATAGATATATTTTAAATTAATCAAAACCCTCTGG
CATGTGGAAAGGATTTATGTGTTCTTCACTTACCCAAGGTCCCAAGTCCCTCACATCCCTCCTG
CAGAAATCGGTCTATTGGTGTCCTAAGACAACAAAGGAAATGTTGAATCTCACTTTGAGACCCT
AGTTCAGTGCTGCACCGGGCTAACTCAGACAAGCTCTAGAAAGCCGTTTGTTAAATCTTCATGA
GAGCTAGTAGCCATGGCTAAGACTTAAGTTATTATTATTCTTTTTTTGAGATGACATTTCTCTG
TGCAGCCCCAGCTGTCCTGGAACTTACTCTGTAGACCAAGCTGCCTTGGAACTCACTCTATAGA
CCAGGCCACCCTCACTCACAGATATCCGTCTGCCGCTGCCTCCCAGGTGCTGGGATGAAAGGTG
TGTACCACTACCACCCAGATTAAAAAATAATTTGTAACTAAACTAAGGCAATACTCAAAACATC
ACTTTCCAGTTTCATATGTCTGATGATTCTGGCCTTAGAAGCTGTTCAGGAGTGTTCATGGCAC
CAAGGTGGTGGCATTTCTGTGGCAGAATCCTGCTGGGCTCCTCCCCTCAGTTCTCCTGGCAGCC
CACTGGTAGTCCAAGGCACAGAAATGGGAAAAGCTGTGCTGCTGGGAACAGATGGGTTTCCCAG
CACCGCCCTGCTGATGAGCAATGCTAATTGGTTCAGAAAGCACAGGGAGAATGAAATGGACATC
CTATTGTTCTTTACCGAGATCCTCAAGGTACAGACGAATTTTAAAAATTCGCCCATTTGGAATT
TTATACCTTTTATAGATGAAAATTTTATACTGTGTCAAGATCTTTTTTTTTTCTCCACATAAAT
CTAGGATTGCCTAATAATTCAAGCCGCGCAGTATACAGAGAGCAGTGTCAGTGTGCAGAAATCA
GTGTGTGTCAGGAGTGCCCACTTCTATTCACAACATAGGTTAGTAATCAGAGACTACACCAGCC
TGGACAGGGCTGGGTGCAAGGCTTCTGGAATCACCAACATGGCTGTCACGGAGACTTCTGAAAG
GGACAGAATGTTCTGTTACAGTTTATCTGTGCGTTCTCTGGGCATATACATGTGTTCATGTGAA
AGTCAAGCGGACCATGGTCCCAAGGGCTGTAGTTCACACACTAGGCACCAGCAGAGCAGAGATG
GACCAGGTATTAGCCTTCTAGCTGTGACCCTGGAAGCCCCTGTCCCCCAAGCATCTCCAGCCTT
GCTTGTTTTTACCAGTATGATGGCGTTTCTAAAAGCACCCTACCTCACAGGAATTCTGAGAGAA
TTAAGAGTGTGTGGAGCATCTGCTACGTGCCCTACATGGGAACTGCCTTCCAAATGTTCATGTT
TTTACTTTTATTACTTTCAAAGCACCGTAAGCAGCTTAGAAGTCATCTACATTTGGTACAAACT
CTAAGTCAAACAAATTTAACTTTGAAATGCCGGTGGCCTAAGCAAATCCTTTTAACTATATTTA
TAAATACTTATAAAAGTACCTCATGCTAGCCAAATTAAAATCTAACTATGGTGACTGACCTGGG
CAAAGAGAAAGCGGTTGTATTTTTCTTGTAGTTTTTCGAGAAAACATCCTTTTTATACAGATCT
AGAAAGAAGAATCGCTGGTTATACCTACATTGATGACGATTGATGTGTTAATACAGAAAATAAA
TTAAGACAAATCTGATACTTTCCTAAAAATAAAGTATTTTAAGCCTAGTAA

hide sequence

RefSeq Acc Id:

XM_039090963 ⟹ XP_038946891

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,034,010 - 46,062,590 (-)	NCBI
mRatBN7.2	13	43,479,754 - 43,510,413 (-)	NCBI

RefSeq Acc Id:

XM_063272533 ⟹ XP_063128603

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,031,923 - 46,053,931 (-)	NCBI

RefSeq Acc Id:

XM_063272534 ⟹ XP_063128604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,015,321 - 46,062,628 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102539	(Get FASTA)	NCBI Sequence Viewer
	NP_001416724	(Get FASTA)	NCBI Sequence Viewer
	NP_001416725	(Get FASTA)	NCBI Sequence Viewer
	NP_001416726	(Get FASTA)	NCBI Sequence Viewer
	NP_001416727	(Get FASTA)	NCBI Sequence Viewer
	XP_006249853	(Get FASTA)	NCBI Sequence Viewer
	XP_038946891	(Get FASTA)	NCBI Sequence Viewer
	XP_063128603	(Get FASTA)	NCBI Sequence Viewer
	XP_063128604	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09806	(Get FASTA)	NCBI Sequence Viewer
	EDM09807	(Get FASTA)	NCBI Sequence Viewer
	EDM09808	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061845
	ENSRNOP00000061845.1
	ENSRNOP00000073892
	ENSRNOP00000073892.2
	ENSRNOP00000087008
	ENSRNOP00000087008.1
	ENSRNOP00000096886.1

RefSeq Acc Id:

NP_001102539 ⟸ NM_001109069

- UniProtKB:

D4A6P2 (UniProtKB/TrEMBL), A6IC39 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGCDGRVSGLLRRNLQPTLTYWSVFFSFGLCIAFLGPTLLDLRCQTHSSLPQISWVFFSQQLCL
LLGSALGGVFKRTLAQSLWALFTSTLVISLVFAVIPLCHDVTVLASVIALAGLAMGCIDTVANM
QLVRIYQKDSAFFLQVLHFFVGLGALLSPLIADPFLSEANCFPANNTANATSRSHVSRVLSQHH
AAAQPWMNQTIPRPPPKDVTENHVSYAFWIMALINLPVPLAVLFLLSKERLLTCSQRKPLLLSA
DELALETRPAEKEDTSSLAHKFQPHPGQEDLFSCCQRKNFRGAPCSFFAIHITAALVLFMTDGM
MGAYSAFVYSYAVEKPLSIGHKSAGYLPSLFWGFITLGRFISIPVSSRMRPATMVFINVVGVVV
TFLLMLILSYNVNFLFVGTASLGLFLSSTFPSMLAYTEDILQYKGCATTVLVTGAGIGEMVLQM
LVGLIFQAQGTYSFLVCGVIFGCLAFIFYILLLFFHRIHPELSSGENMTLIVTGSKEHGTHHHP

hide sequence

RefSeq Acc Id:

XP_006249853 ⟸ XM_006249791

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGCDGRVSGLLRRNLQPTLTYWSVFFSFGLCIAFLGPTLLDLRCQTHSSLPQISWVFFSQQLCL
LLGSALGGVFKRTLAQSLWALFTSTLVISLVFAVIPLCHDVTVLASVIALAGLAMGCIDTVANM
QLVRIYQKDSAFFLQVLHFFVGLGALLSPLIADPFLSEANCFPANNTANATSRSHVSRVLSQHH
AAAQPWMNQTIPRPPPKDVTENHVSYAFWIMALINLPVPLAVLFLLSKERLLTCSQRKPLLLSA
DELALETRPAEKEDTSSLAHKFQPHPGQEDLFSCCQRKNFRGAPCSFFAIHITAALVLFMTDGM
MGAYSAFVYSYAVEKPLSIGHKSAGYLPSLFWGFITLGRFISIPVSSRMRPATMVFINVVGVVV
TFLLMLILSYNVNFLFVGTASLGLFLSSTFPSMLAYTEDILQYKGCATTVLVTGAGIGEMVLQM
LVGLIFQAQGTYSFLVCGVIFGCLAFIFYILLLFFHRIHPELSSVLTQDKALGMENSDCYQR

hide sequence

Ensembl Acc Id:

ENSRNOP00000073892 ⟸ ENSRNOT00000077857

Ensembl Acc Id:

ENSRNOP00000061845 ⟸ ENSRNOT00000068003

RefSeq Acc Id:	XP_038946891 ⟸ XM_039090963
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000096886 ⟸ ENSRNOT00000120137

Ensembl Acc Id:

ENSRNOP00000087008 ⟸ ENSRNOT00000100615

RefSeq Acc Id:	XP_063128604 ⟸ XM_063272534
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063128603 ⟸ XM_063272533
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A6P2-F1-model_v2	AlphaFold	D4A6P2	1-512	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698810

Promoter ID:

EPDNEW_R9332

Type:

single initiation site

Name:

Mfsd4a_1

Description:

major facilitator superfamily domain containing 4A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	48,848,865 - 48,848,925	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566090	AgrOrtholog
BioCyc Gene	G2FUF-18328	BioCyc
Ensembl Genes	ENSRNOG00000024657	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000068003	ENTREZGENE
	ENSRNOT00000068003.4	UniProtKB/TrEMBL
	ENSRNOT00000077857	ENTREZGENE
	ENSRNOT00000077857.3	UniProtKB/TrEMBL
	ENSRNOT00000100615	ENTREZGENE
	ENSRNOT00000100615.2	UniProtKB/TrEMBL
	ENSRNOT00000120137.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1250.20	UniProtKB/TrEMBL
InterPro	MFS	UniProtKB/TrEMBL
	MFS_trans_sf	UniProtKB/TrEMBL
KEGG Report	rno:498228	UniProtKB/TrEMBL
NCBI Gene	498228	ENTREZGENE
PANTHER	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 4A	UniProtKB/TrEMBL
	SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1	UniProtKB/TrEMBL
Pfam	MFS_1	UniProtKB/TrEMBL
PhenoGen	Slc60a1	PhenoGen
RatGTEx	ENSRNOG00000024657	RatGTEx
Superfamily-SCOP	MFS_gen_substrate_transporter	UniProtKB/TrEMBL
UniProt	A0A0G2K6P5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B4Y9_RAT	UniProtKB/TrEMBL
	A0A8I6GFK9	ENTREZGENE, UniProtKB/TrEMBL
	A6IC39	ENTREZGENE, UniProtKB/TrEMBL
	A6IC40	ENTREZGENE, UniProtKB/TrEMBL
	D4A6P2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-11-13	Slc60a1	solute carrier family 60 member 1	Mfsd4a	major facilitator superfamily domain containing 4A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2017-02-01	Mfsd4a	major facilitator superfamily domain containing 4A	Mfsd4	major facilitator superfamily domain containing 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Mfsd4	major facilitator superfamily domain containing 4	RGD1566090_predicted	similar to hypothetical protein DKFZp761N1114 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1566090_predicted	similar to hypothetical protein DKFZp761N1114 (predicted)	LOC498228	similar to hypothetical protein DKFZp761N1114	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498228	similar to hypothetical protein DKFZp761N1114			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message